Wall clock time and date at job start Mon Mar 30 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47170 * 2 1 4 4 C 1.46502 * 119.99806 * 277.47528 * 3 2 1 5 5 C 1.50692 * 109.47416 * 270.00138 * 4 3 2 6 6 H 1.08000 * 120.00252 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00241 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00261 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47393 * 89.99477 * 9 7 5 11 11 H 1.48498 * 109.46969 * 210.00124 * 9 7 5 12 12 H 1.48501 * 109.47008 * 329.99749 * 9 7 5 13 13 C 1.34781 * 120.00170 * 97.48038 * 3 2 1 14 14 O 1.21279 * 119.99755 * 184.57881 * 13 3 2 15 15 C 1.50693 * 120.00168 * 4.57365 * 13 3 2 16 16 C 1.52304 * 115.91390 * 132.86614 * 15 13 3 17 17 C 1.51776 * 115.37728 * 64.76208 * 15 13 3 18 18 H 1.08997 * 117.09296 * 0.84623 * 17 15 13 19 19 C 1.52715 * 120.71609 * 211.05397 * 17 15 13 20 20 C 1.52871 * 110.03920 * 21.41696 * 19 17 15 21 21 C 1.53301 * 108.58465 * 305.54544 * 20 19 17 22 22 C 1.52079 * 114.63828 * 279.11621 * 15 13 3 23 23 H 1.09000 * 109.46711 * 175.19078 * 1 2 3 24 24 H 1.08998 * 109.46988 * 295.18933 * 1 2 3 25 25 H 1.08997 * 109.46567 * 55.19311 * 1 2 3 26 26 H 1.08996 * 109.47591 * 239.99461 * 2 1 3 27 27 H 1.09005 * 109.47037 * 119.99516 * 2 1 3 28 28 H 1.09000 * 109.46844 * 30.00330 * 4 3 2 29 29 H 1.09002 * 109.47098 * 149.99810 * 4 3 2 30 30 H 0.97001 * 120.00032 * 180.02562 * 8 7 5 31 31 H 1.08993 * 117.53631 * 1.59566 * 16 15 13 32 32 H 1.09010 * 117.53535 * 146.76557 * 16 15 13 33 33 H 1.09003 * 109.35832 * 261.27535 * 19 17 15 34 34 H 1.09003 * 109.35332 * 141.55750 * 19 17 15 35 35 H 1.09007 * 109.62094 * 65.27836 * 20 19 17 36 36 H 1.08999 * 109.61943 * 185.81649 * 20 19 17 37 37 H 1.08996 * 109.61655 * 194.17403 * 21 20 19 38 38 H 1.08997 * 109.61447 * 314.53103 * 21 20 19 39 39 H 1.09000 * 109.26389 * 45.36059 * 22 15 13 40 40 H 1.08999 * 109.23473 * 285.87366 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1069 2.1268 -1.2580 5 6 3.4653 1.9129 -1.8742 6 1 4.1901 1.2841 -1.3787 7 6 3.7825 2.5191 -3.0713 8 7 4.9682 2.3328 -3.6089 9 14 2.5286 3.6062 -3.9289 10 1 2.6867 5.0071 -3.4625 11 1 2.7431 3.5459 -5.3970 12 1 1.1591 3.1295 -3.6088 13 6 2.3862 1.9659 1.1573 14 8 2.7114 3.1343 1.1698 15 6 2.3935 1.1681 2.4356 16 6 3.6417 1.3038 3.2978 17 6 3.3923 0.0263 2.4841 18 1 4.0265 -0.1160 1.6092 19 6 3.0948 -1.2366 3.2896 20 6 1.5887 -1.3723 3.5139 21 6 1.0727 -0.0814 4.1600 22 6 1.0316 1.0142 3.0947 23 1 -0.3633 -1.0241 -0.0862 24 1 -0.3633 0.4374 0.9299 25 1 -0.3632 0.5866 -0.8438 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3369 1.7742 -1.9443 29 1 1.9600 3.1889 -1.0619 30 1 5.1915 2.7596 -4.4508 31 1 4.4229 1.9799 2.9506 32 1 3.5160 1.2456 4.3791 33 1 3.5998 -1.1775 4.2538 34 1 3.4588 -2.1072 2.7439 35 1 1.0889 -1.5282 2.5578 36 1 1.3917 -2.2164 4.1747 37 1 0.0703 -0.2453 4.5552 38 1 1.7408 0.2155 4.9685 39 1 0.2931 0.7518 2.3372 40 1 0.7493 1.9584 3.5604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693257584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:48 Heat of formation + Delta-G solvation = -22.975061 kcal Electronic energy + Delta-G solvation = -19748.532955 eV Core-core repulsion = 16949.515194 eV Total energy + Delta-G solvation = -2799.017761 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55825 -37.77606 -35.37583 -33.06457 -32.64843 -30.91251 -30.22966 -27.86709 -24.88281 -23.76305 -22.96160 -21.86776 -20.99615 -19.25216 -17.92485 -16.88205 -16.68223 -15.60157 -14.89553 -14.48535 -14.29572 -14.08521 -13.72986 -13.58923 -13.35273 -13.05185 -12.53905 -12.45200 -12.15517 -12.08207 -11.71550 -11.57277 -11.37289 -11.04128 -10.93747 -10.83753 -10.62291 -10.51428 -10.43181 -10.14266 -9.73524 -9.54049 -9.49769 -8.79722 -8.57746 -7.66410 -6.07941 -4.06397 3.29886 3.34062 3.35912 3.38042 3.67551 3.98107 4.40666 4.62326 4.78097 4.82690 4.93177 5.09647 5.20343 5.24893 5.27119 5.37738 5.48807 5.52659 5.62767 5.66132 5.76740 5.80819 5.93020 5.94104 6.03617 6.09279 6.16685 6.22774 6.23575 6.27119 6.31017 6.42629 6.59191 6.76687 6.99023 7.41466 7.63028 8.32342 8.48661 8.94048 9.04402 9.52862 11.05431 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030835 B = 0.006655 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.836411 B = 4206.211575 C = 4372.335320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.215 3.785 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.540 3.460 14 O -0.541 6.541 15 C -0.130 4.130 16 C -0.153 4.153 17 C -0.139 4.139 18 H 0.109 0.891 19 C -0.087 4.087 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.084 4.084 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -8.898 13.865 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.024 4.024 3 N -0.317 5.317 4 C 0.094 3.906 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.326 3.674 14 O -0.419 6.419 15 C -0.133 4.133 16 C -0.190 4.190 17 C -0.157 4.157 18 H 0.127 0.873 19 C -0.124 4.124 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.121 4.121 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.791 -8.218 13.667 18.210 hybrid contribution -0.427 0.624 -0.728 1.049 sum -9.218 -7.595 12.939 17.609 Atomic orbital electron populations 1.22346 0.97011 1.01601 1.02154 1.21578 0.93419 0.84002 1.03426 1.47851 1.62705 1.13488 1.07635 1.19642 0.97723 0.92652 0.80581 1.21333 0.98373 1.30896 1.06050 0.90819 1.24853 0.95256 0.95973 0.96921 1.69898 1.20300 1.44203 1.19245 0.86851 0.82203 0.81823 0.78839 1.19909 1.21059 1.19072 1.19498 0.77305 0.86876 0.83739 1.90648 1.48361 1.16718 1.86123 1.20951 0.93479 1.01588 0.97269 1.23140 0.98172 1.00230 0.97444 1.22318 1.01792 0.89917 1.01703 0.87338 1.21059 0.96170 0.95837 0.99324 1.21621 0.95934 0.97238 1.01124 1.21583 1.01068 0.95065 0.97799 1.20940 0.93862 0.99272 0.98060 0.92051 0.92516 0.92276 0.90422 0.89972 0.95278 0.94620 0.92585 0.88252 0.88383 0.91569 0.91355 0.91316 0.91940 0.91705 0.91796 0.90377 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.08 37.16 0.37 -1.95 16 2 C 0.10 1.63 5.73 -4.04 -0.02 1.61 16 3 N -0.59 -12.42 2.46 -175.07 -0.43 -12.85 16 4 C 0.21 5.39 4.28 -5.20 -0.02 5.37 16 5 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 9 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 13 C 0.54 11.53 6.61 -10.99 -0.07 11.45 16 14 O -0.54 -14.01 16.52 5.56 0.09 -13.92 16 15 C -0.13 -2.05 1.28 -157.11 -0.20 -2.25 16 16 C -0.15 -2.25 9.19 -26.83 -0.25 -2.50 16 17 C -0.14 -1.95 3.83 -91.13 -0.35 -2.30 16 18 H 0.11 1.77 8.13 -51.93 -0.42 1.35 16 19 C -0.09 -0.90 5.80 -26.94 -0.16 -1.06 16 20 C -0.12 -1.13 5.78 -26.64 -0.15 -1.28 16 21 C -0.12 -1.14 5.70 -26.64 -0.15 -1.29 16 22 C -0.08 -1.07 5.37 -27.27 -0.15 -1.21 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.72 5.27 -51.93 -0.27 0.44 16 25 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 26 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 27 H 0.08 1.18 3.75 -51.93 -0.19 0.98 16 28 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 29 H 0.04 0.96 6.79 -51.93 -0.35 0.61 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.10 1.19 7.27 -51.92 -0.38 0.81 16 33 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.66 7.04 -51.93 -0.37 0.30 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.61 7.12 -51.93 -0.37 0.24 16 39 H 0.08 0.98 4.68 -51.93 -0.24 0.74 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -33.61 306.55 -7.54 -41.15 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.34 Total: 0.05 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.59 Total: -9.13 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.34 Total: -40.03 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.61 -7.54 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693257584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.173 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds