Wall clock time and date at job start Mon Mar 30 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47170 * 2 1 4 4 C 1.46502 * 119.99806 * 277.47528 * 3 2 1 5 5 C 1.50692 * 109.47416 * 270.00138 * 4 3 2 6 6 H 1.08000 * 120.00252 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00241 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00261 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47393 * 89.99477 * 9 7 5 11 11 H 1.48498 * 109.46969 * 210.00124 * 9 7 5 12 12 H 1.48501 * 109.47008 * 329.99749 * 9 7 5 13 13 C 1.34781 * 120.00170 * 97.48038 * 3 2 1 14 14 O 1.21279 * 119.99755 * 184.57881 * 13 3 2 15 15 C 1.50693 * 120.00168 * 4.57365 * 13 3 2 16 16 C 1.52304 * 115.91390 * 132.86614 * 15 13 3 17 17 C 1.51776 * 115.37728 * 64.76208 * 15 13 3 18 18 H 1.08997 * 117.09296 * 0.84623 * 17 15 13 19 19 C 1.52715 * 120.71609 * 211.05397 * 17 15 13 20 20 C 1.52871 * 110.03920 * 21.41696 * 19 17 15 21 21 C 1.53301 * 108.58465 * 305.54544 * 20 19 17 22 22 C 1.52079 * 114.63828 * 279.11621 * 15 13 3 23 23 H 1.09000 * 109.46711 * 175.19078 * 1 2 3 24 24 H 1.08998 * 109.46988 * 295.18933 * 1 2 3 25 25 H 1.08997 * 109.46567 * 55.19311 * 1 2 3 26 26 H 1.08996 * 109.47591 * 239.99461 * 2 1 3 27 27 H 1.09005 * 109.47037 * 119.99516 * 2 1 3 28 28 H 1.09000 * 109.46844 * 30.00330 * 4 3 2 29 29 H 1.09002 * 109.47098 * 149.99810 * 4 3 2 30 30 H 0.97001 * 120.00032 * 180.02562 * 8 7 5 31 31 H 1.08993 * 117.53631 * 1.59566 * 16 15 13 32 32 H 1.09010 * 117.53535 * 146.76557 * 16 15 13 33 33 H 1.09003 * 109.35832 * 261.27535 * 19 17 15 34 34 H 1.09003 * 109.35332 * 141.55750 * 19 17 15 35 35 H 1.09007 * 109.62094 * 65.27836 * 20 19 17 36 36 H 1.08999 * 109.61943 * 185.81649 * 20 19 17 37 37 H 1.08996 * 109.61655 * 194.17403 * 21 20 19 38 38 H 1.08997 * 109.61447 * 314.53103 * 21 20 19 39 39 H 1.09000 * 109.26389 * 45.36059 * 22 15 13 40 40 H 1.08999 * 109.23473 * 285.87366 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1069 2.1268 -1.2580 5 6 3.4653 1.9129 -1.8742 6 1 4.1901 1.2841 -1.3787 7 6 3.7825 2.5191 -3.0713 8 7 4.9682 2.3328 -3.6089 9 14 2.5286 3.6062 -3.9289 10 1 2.6867 5.0071 -3.4625 11 1 2.7431 3.5459 -5.3970 12 1 1.1591 3.1295 -3.6088 13 6 2.3862 1.9659 1.1573 14 8 2.7114 3.1343 1.1698 15 6 2.3935 1.1681 2.4356 16 6 3.6417 1.3038 3.2978 17 6 3.3923 0.0263 2.4841 18 1 4.0265 -0.1160 1.6092 19 6 3.0948 -1.2366 3.2896 20 6 1.5887 -1.3723 3.5139 21 6 1.0727 -0.0814 4.1600 22 6 1.0316 1.0142 3.0947 23 1 -0.3633 -1.0241 -0.0862 24 1 -0.3633 0.4374 0.9299 25 1 -0.3632 0.5866 -0.8438 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3369 1.7742 -1.9443 29 1 1.9600 3.1889 -1.0619 30 1 5.1915 2.7596 -4.4508 31 1 4.4229 1.9799 2.9506 32 1 3.5160 1.2456 4.3791 33 1 3.5998 -1.1775 4.2538 34 1 3.4588 -2.1072 2.7439 35 1 1.0889 -1.5282 2.5578 36 1 1.3917 -2.2164 4.1747 37 1 0.0703 -0.2453 4.5552 38 1 1.7408 0.2155 4.9685 39 1 0.2931 0.7518 2.3372 40 1 0.7493 1.9584 3.5604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693257584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:48 Heat of formation + Delta-G solvation = -44.489669 kcal Electronic energy + Delta-G solvation = -19749.465898 eV Core-core repulsion = 16949.515194 eV Total energy + Delta-G solvation = -2799.950704 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.89678 -39.23690 -37.09295 -34.86435 -34.01758 -32.10944 -31.60357 -29.74979 -26.10453 -25.16156 -24.40970 -23.21737 -22.25724 -20.46959 -19.31636 -19.09191 -18.06955 -17.36553 -16.40738 -16.19450 -15.52137 -15.24355 -15.01237 -14.81251 -14.54790 -14.51011 -14.18917 -13.75530 -13.72505 -13.40101 -13.24346 -13.00021 -12.71671 -12.54752 -12.34218 -12.15544 -12.00534 -11.87459 -11.78937 -11.53102 -11.48754 -10.88134 -10.84646 -10.66366 -10.34801 -9.46662 -8.39129 -6.44631 1.27920 1.32339 1.40993 1.69127 2.19397 2.26536 2.65944 2.94775 3.45813 3.71344 3.75374 3.84802 4.07934 4.15435 4.29191 4.37796 4.39002 4.49969 4.55892 4.67356 4.69527 4.76071 4.81030 4.85879 4.95221 4.99650 5.03677 5.05125 5.15226 5.23437 5.33936 5.34818 5.39871 5.42785 5.47980 5.62528 5.64195 6.18953 6.55792 6.66435 7.15625 7.36026 8.77851 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030835 B = 0.006655 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.836411 B = 4206.211575 C = 4372.335320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.224 3.776 5 C -0.539 4.539 6 H 0.027 0.973 7 C 0.013 3.987 8 N -0.943 5.943 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.270 1.270 12 H -0.239 1.239 13 C 0.526 3.474 14 O -0.601 6.601 15 C -0.131 4.131 16 C -0.157 4.157 17 C -0.125 4.125 18 H 0.074 0.926 19 C -0.082 4.082 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.081 4.081 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.015 0.985 30 H 0.270 0.730 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 -10.664 15.420 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.321 5.321 4 C 0.102 3.898 5 C -0.577 4.577 6 H 0.045 0.955 7 C -0.186 4.186 8 N -0.583 5.583 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.195 1.195 12 H -0.163 1.163 13 C 0.315 3.685 14 O -0.482 6.482 15 C -0.134 4.134 16 C -0.194 4.194 17 C -0.143 4.143 18 H 0.093 0.907 19 C -0.119 4.119 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.118 4.118 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.644 -10.047 15.235 21.648 hybrid contribution 0.597 1.150 -1.209 1.772 sum -11.048 -8.896 14.026 19.948 Atomic orbital electron populations 1.22287 0.93910 1.03804 1.02222 1.21885 0.95881 0.81243 1.03835 1.47990 1.62580 1.15129 1.06435 1.19297 0.95697 0.92269 0.82580 1.21533 0.99536 1.30340 1.06341 0.95499 1.25850 0.97588 0.97424 0.97706 1.70044 1.22634 1.45575 1.20044 0.85719 0.80408 0.78956 0.77927 1.20217 1.19512 1.16252 1.20593 0.75688 0.86743 0.85506 1.90598 1.50831 1.19529 1.87279 1.20941 0.95921 1.01819 0.94762 1.23226 0.96731 1.00162 0.99287 1.22357 0.99820 0.91427 1.00742 0.90738 1.21129 0.97890 0.93477 0.99414 1.21649 0.94292 0.97982 1.01751 1.21591 1.02813 0.93738 0.96661 1.21015 0.91304 1.00593 0.98922 0.88445 0.91344 0.93612 0.91781 0.87861 0.93309 0.96676 0.92142 0.91704 0.84859 0.89783 0.90493 0.91451 0.89135 0.89270 0.91107 0.90103 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.08 71.98 0.73 -3.26 16 2 C 0.09 3.00 5.73 86.38 0.50 3.50 16 3 N -0.59 -25.76 2.46 -826.17 -2.03 -27.80 16 4 C 0.22 11.54 4.28 85.63 0.37 11.91 16 5 C -0.54 -33.01 9.94 25.60 0.25 -32.76 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.76 5.47 84.66 0.46 1.23 16 8 N -0.94 -60.86 13.96 21.45 0.30 -60.56 16 9 Si 0.95 45.78 27.47 68.60 1.88 47.66 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 13 C 0.53 23.34 6.61 87.65 0.58 23.92 16 14 O -0.60 -32.97 16.52 -3.03 -0.05 -33.02 16 15 C -0.13 -4.11 1.28 -53.87 -0.07 -4.18 16 16 C -0.16 -4.64 9.19 30.53 0.28 -4.36 16 17 C -0.12 -3.43 3.83 -11.12 -0.04 -3.48 16 18 H 0.07 2.56 8.13 -2.39 -0.02 2.54 16 19 C -0.08 -1.44 5.80 30.46 0.18 -1.26 16 20 C -0.12 -1.65 5.78 30.65 0.18 -1.47 16 21 C -0.11 -1.64 5.70 30.65 0.17 -1.47 16 22 C -0.08 -1.86 5.37 30.25 0.16 -1.70 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 1.51 5.27 -2.39 -0.01 1.50 16 25 H 0.04 1.24 7.94 -2.39 -0.02 1.22 16 26 H 0.06 2.22 8.12 -2.39 -0.02 2.20 16 27 H 0.10 2.84 3.75 -2.38 -0.01 2.83 16 28 H 0.05 2.31 6.93 -2.39 -0.02 2.30 16 29 H 0.02 0.84 6.79 -2.39 -0.02 0.83 16 30 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 32 H 0.13 2.95 7.27 -2.38 -0.02 2.93 16 33 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 0.97 7.04 -2.38 -0.02 0.96 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.00 7.12 -2.39 -0.02 0.98 16 39 H 0.08 1.79 4.68 -2.39 -0.01 1.78 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -79.15 306.55 4.80 -74.35 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.96 Total: 12.75 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 3.74 Total: -13.38 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.73 Total: -88.36 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.05 Total: -33.02 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -79.15 4.80 -74.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693257584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.857 kcal (2) G-P(sol) polarization free energy of solvation -79.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds