Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46654 * 2 1 4 4 N 1.46897 * 109.46812 * 119.99931 * 2 1 3 5 5 C 1.46903 * 110.99711 * 155.00449 * 4 2 1 6 6 C 1.50697 * 109.47197 * 179.97438 * 5 4 2 7 7 C 1.39864 * 126.04185 * 270.00127 * 6 5 4 8 8 N 1.30846 * 108.20128 * 179.74308 * 7 6 5 9 9 N 1.40078 * 108.20341 * 0.40055 * 8 7 6 10 10 C 1.46504 * 126.03647 * 179.85800 * 9 8 7 11 11 H 1.09002 * 109.46865 * 24.68715 * 10 9 8 12 12 C 1.53002 * 109.47132 * 144.69060 * 10 9 8 13 13 C 1.53002 * 109.47165 * 264.68843 * 10 9 8 14 14 C 1.50696 * 109.46919 * 174.99802 * 13 10 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47364 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46883 * 120.00040 * 18 16 14 21 21 H 1.48497 * 109.46870 * 239.99850 * 18 16 14 22 22 C 1.34947 * 107.92604 * 359.59257 * 9 8 7 23 23 H 1.08992 * 109.47374 * 299.99642 * 1 2 3 24 24 H 1.08993 * 109.47300 * 60.00444 * 1 2 3 25 25 H 1.09000 * 109.46616 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46983 * 239.99763 * 2 1 3 27 27 H 1.08997 * 109.47112 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47177 * 299.99823 * 3 2 1 29 29 H 1.08997 * 109.47619 * 60.00152 * 3 2 1 30 30 H 1.00904 * 110.99735 * 278.94830 * 4 2 1 31 31 H 1.09001 * 109.46843 * 59.99369 * 5 4 2 32 32 H 1.09004 * 109.46704 * 299.99618 * 5 4 2 33 33 H 1.07998 * 125.89664 * 359.97438 * 7 6 5 34 34 H 1.09001 * 109.46743 * 299.99875 * 12 10 9 35 35 H 1.08994 * 109.47199 * 60.00032 * 12 10 9 36 36 H 1.09000 * 109.47048 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46497 * 55.00067 * 13 10 9 38 38 H 1.08999 * 109.46623 * 295.00131 * 13 10 9 39 39 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 40 40 H 1.08003 * 126.12293 * 180.26287 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9807 6 6 3.8351 -1.9363 2.2299 7 6 4.5412 -1.3516 3.2862 8 7 4.7636 -2.2727 4.1886 9 7 4.2131 -3.4764 3.7301 10 6 4.2420 -4.7608 4.4343 11 1 4.3447 -4.5857 5.5052 12 6 2.9414 -5.5200 4.1640 13 6 5.4286 -5.5887 3.9367 14 6 5.5312 -6.8560 4.7457 15 1 4.8215 -7.0512 5.5359 16 6 6.5320 -7.7658 4.4775 17 7 7.4002 -7.5249 3.5195 18 14 6.6597 -9.3364 5.4807 19 1 5.5758 -9.3652 6.4954 20 1 6.5276 -10.5105 4.5810 21 1 7.9776 -9.3817 6.1635 22 6 3.6464 -3.2427 2.5279 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 2.0020 -0.0814 2.0022 31 1 4.0522 -0.4218 0.7425 32 1 3.3431 -1.9444 0.1531 33 1 4.8466 -0.3176 3.3481 34 1 2.0961 -4.9302 4.5185 35 1 2.8387 -5.6950 3.0931 36 1 2.9627 -6.4754 4.6883 37 1 6.3464 -5.0113 4.0479 38 1 5.2817 -5.8390 2.8861 39 1 7.3341 -6.7092 2.9988 40 1 3.1338 -3.9684 1.9138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693495299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = 51.521728 kcal Electronic energy + Delta-G solvation = -18159.041647 eV Core-core repulsion = 15395.547060 eV Total energy + Delta-G solvation = -2763.494587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82677 -37.42821 -35.55330 -32.87232 -32.17749 -29.66521 -28.84964 -27.31468 -26.81464 -24.78838 -23.41900 -21.81499 -20.93561 -19.90326 -19.42252 -16.90283 -16.34546 -15.61444 -15.21441 -14.41302 -14.39556 -14.11603 -13.77809 -13.62063 -13.50264 -12.89359 -12.64816 -12.44496 -12.35436 -12.06880 -11.81844 -11.69521 -11.58535 -11.36809 -11.29756 -11.01945 -10.85325 -10.33231 -10.22607 -10.14984 -10.04920 -8.94025 -8.71000 -8.45027 -8.43106 -7.92039 -6.46859 -4.18437 2.42269 3.05395 3.10730 3.39302 3.43019 3.55516 4.31921 4.46975 4.71949 4.93088 4.96191 5.12617 5.24442 5.30168 5.36636 5.43540 5.49797 5.55141 5.62563 5.66329 5.70354 5.72002 5.85881 5.90587 5.95236 6.11361 6.13803 6.35409 6.46388 6.48172 6.62304 6.97843 7.09154 7.16665 7.26548 7.39683 7.57786 8.02555 8.22093 8.32523 8.74089 9.54468 10.93558 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.043658 B = 0.003767 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.189023 B = 7430.432271 C = 7552.978600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 C -0.183 4.183 4 N -0.682 5.682 5 C 0.145 3.855 6 C -0.260 4.260 7 C 0.036 3.964 8 N -0.299 5.299 9 N -0.345 5.345 10 C 0.159 3.841 11 H 0.092 0.908 12 C -0.147 4.147 13 C 0.007 3.993 14 C -0.602 4.602 15 H 0.055 0.945 16 C 0.018 3.982 17 N -0.908 5.908 18 Si 1.076 2.924 19 H -0.288 1.288 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.083 3.917 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.340 0.660 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.171 0.829 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.270 0.730 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 13.657 -6.194 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.242 4.242 4 N -0.313 5.313 5 C 0.016 3.984 6 C -0.272 4.272 7 C -0.150 4.150 8 N -0.121 5.121 9 N -0.126 5.126 10 C 0.060 3.940 11 H 0.110 0.890 12 C -0.205 4.205 13 C -0.031 4.031 14 C -0.641 4.641 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.544 5.544 18 Si 0.904 3.096 19 H -0.214 1.214 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.067 4.067 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.188 0.812 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.080 0.920 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.683 11.270 -4.921 16.289 hybrid contribution -0.616 2.479 -1.001 2.743 sum -11.298 13.749 -5.922 18.755 Atomic orbital electron populations 1.21759 0.94644 1.02224 1.01052 1.21567 0.95712 0.92221 0.93949 1.22521 1.01336 0.98136 1.02170 1.60706 1.24995 1.40351 1.05238 1.20039 0.87708 0.96578 0.94118 1.19730 1.12775 0.93976 1.00736 1.23572 0.99771 0.98951 0.92668 1.77326 1.20522 0.90716 1.23487 1.49310 1.40334 1.08550 1.14393 1.21661 0.98521 0.77165 0.96702 0.88980 1.22055 0.94670 1.01290 1.02492 1.19613 0.91778 0.94890 0.96845 1.21912 1.17302 1.04656 1.20235 0.92628 1.25881 0.92481 1.02813 0.97468 1.70714 1.35806 1.27987 1.19858 0.83443 0.75978 0.74852 0.75319 1.21367 1.21246 1.21250 1.22200 0.98153 0.97178 0.89181 0.92876 0.92836 0.92034 0.90654 0.92717 0.92315 0.92521 0.84133 0.94957 0.91004 0.81231 0.93491 0.92470 0.89132 0.96634 0.96889 0.91964 0.81721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.52 37.16 0.35 -0.80 16 2 C 0.08 0.68 3.20 -67.71 -0.22 0.46 16 3 C -0.18 -1.42 9.16 37.16 0.34 -1.08 16 4 N -0.68 -7.48 6.24 -107.99 -0.67 -8.15 16 5 C 0.14 1.75 5.96 -4.98 -0.03 1.72 16 6 C -0.26 -3.98 5.61 -105.06 -0.59 -4.56 16 7 C 0.04 0.59 11.96 -17.36 -0.21 0.38 16 8 N -0.30 -5.97 12.58 30.62 0.39 -5.58 16 9 N -0.35 -6.84 3.53 -54.86 -0.19 -7.04 16 10 C 0.16 3.34 3.35 -67.93 -0.23 3.12 16 11 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 12 C -0.15 -2.62 8.64 37.16 0.32 -2.29 16 13 C 0.01 0.17 4.08 -27.88 -0.11 0.06 16 14 C -0.60 -16.44 8.41 -34.44 -0.29 -16.73 16 15 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 16 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 17 N -0.91 -27.58 13.65 55.43 0.76 -26.82 16 18 Si 1.08 24.80 29.90 -169.99 -5.08 19.71 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.08 1.42 10.50 -17.22 -0.18 1.24 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.69 7.80 -51.93 -0.40 0.28 16 27 H 0.05 0.44 7.45 -51.93 -0.39 0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.34 3.68 8.46 -39.29 -0.33 3.34 16 31 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 32 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 33 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.97 7.16 -51.93 -0.37 0.60 16 36 H 0.09 1.66 6.95 -51.93 -0.36 1.30 16 37 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 38 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 39 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 40 H 0.17 2.53 7.26 -52.48 -0.38 2.15 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -30.63 328.99 -7.50 -38.13 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.72 Total: 2.87 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -0.94 Total: -18.08 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.27 Total: -47.59 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.63 -7.50 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693495299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.655 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds