Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46654 * 2 1 4 4 N 1.46897 * 109.46812 * 119.99931 * 2 1 3 5 5 C 1.46903 * 110.99711 * 155.00449 * 4 2 1 6 6 C 1.50697 * 109.47197 * 179.97438 * 5 4 2 7 7 C 1.39864 * 126.04185 * 270.00127 * 6 5 4 8 8 N 1.30846 * 108.20128 * 179.74308 * 7 6 5 9 9 N 1.40078 * 108.20341 * 0.40055 * 8 7 6 10 10 C 1.46504 * 126.03647 * 179.85800 * 9 8 7 11 11 H 1.09002 * 109.46865 * 24.68715 * 10 9 8 12 12 C 1.53002 * 109.47132 * 144.69060 * 10 9 8 13 13 C 1.53002 * 109.47165 * 264.68843 * 10 9 8 14 14 C 1.50696 * 109.46919 * 174.99802 * 13 10 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47364 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46883 * 120.00040 * 18 16 14 21 21 H 1.48497 * 109.46870 * 239.99850 * 18 16 14 22 22 C 1.34947 * 107.92604 * 359.59257 * 9 8 7 23 23 H 1.08992 * 109.47374 * 299.99642 * 1 2 3 24 24 H 1.08993 * 109.47300 * 60.00444 * 1 2 3 25 25 H 1.09000 * 109.46616 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46983 * 239.99763 * 2 1 3 27 27 H 1.08997 * 109.47112 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47177 * 299.99823 * 3 2 1 29 29 H 1.08997 * 109.47619 * 60.00152 * 3 2 1 30 30 H 1.00904 * 110.99735 * 278.94830 * 4 2 1 31 31 H 1.09001 * 109.46843 * 59.99369 * 5 4 2 32 32 H 1.09004 * 109.46704 * 299.99618 * 5 4 2 33 33 H 1.07998 * 125.89664 * 359.97438 * 7 6 5 34 34 H 1.09001 * 109.46743 * 299.99875 * 12 10 9 35 35 H 1.08994 * 109.47199 * 60.00032 * 12 10 9 36 36 H 1.09000 * 109.47048 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46497 * 55.00067 * 13 10 9 38 38 H 1.08999 * 109.46623 * 295.00131 * 13 10 9 39 39 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 40 40 H 1.08003 * 126.12293 * 180.26287 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9807 6 6 3.8351 -1.9363 2.2299 7 6 4.5412 -1.3516 3.2862 8 7 4.7636 -2.2727 4.1886 9 7 4.2131 -3.4764 3.7301 10 6 4.2420 -4.7608 4.4343 11 1 4.3447 -4.5857 5.5052 12 6 2.9414 -5.5200 4.1640 13 6 5.4286 -5.5887 3.9367 14 6 5.5312 -6.8560 4.7457 15 1 4.8215 -7.0512 5.5359 16 6 6.5320 -7.7658 4.4775 17 7 7.4002 -7.5249 3.5195 18 14 6.6597 -9.3364 5.4807 19 1 5.5758 -9.3652 6.4954 20 1 6.5276 -10.5105 4.5810 21 1 7.9776 -9.3817 6.1635 22 6 3.6464 -3.2427 2.5279 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 2.0020 -0.0814 2.0022 31 1 4.0522 -0.4218 0.7425 32 1 3.3431 -1.9444 0.1531 33 1 4.8466 -0.3176 3.3481 34 1 2.0961 -4.9302 4.5185 35 1 2.8387 -5.6950 3.0931 36 1 2.9627 -6.4754 4.6883 37 1 6.3464 -5.0113 4.0479 38 1 5.2817 -5.8390 2.8861 39 1 7.3341 -6.7092 2.9988 40 1 3.1338 -3.9684 1.9138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693495299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = 32.112655 kcal Electronic energy + Delta-G solvation = -18159.883287 eV Core-core repulsion = 15395.547060 eV Total energy + Delta-G solvation = -2764.336227 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20141 -38.28297 -37.25190 -34.74876 -33.28304 -31.18772 -30.01152 -28.64545 -27.93374 -26.17151 -25.09697 -23.39110 -21.67951 -21.25139 -20.90308 -18.97510 -17.76109 -16.54932 -16.13277 -15.93549 -15.84101 -15.56122 -15.19900 -15.02843 -14.40427 -14.30942 -13.92465 -13.83333 -13.52116 -13.28154 -13.06478 -13.01964 -12.81064 -12.68721 -12.53039 -12.11981 -12.03642 -11.97498 -11.87909 -11.70500 -11.39041 -10.89078 -10.61518 -10.33449 -9.43352 -9.12939 -8.74037 -6.46368 1.03628 1.52475 1.62396 1.63263 1.78337 1.84763 2.55066 3.11729 3.46929 3.61533 3.95034 4.01786 4.06629 4.11454 4.23789 4.26362 4.40416 4.43535 4.51897 4.70530 4.78427 4.79746 4.83132 4.89179 4.98659 5.02731 5.06125 5.09351 5.12941 5.22297 5.29356 5.32668 5.47055 5.74078 5.84732 6.10041 6.19545 6.24409 6.46496 6.57093 6.84372 7.36637 8.65890 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.043658 B = 0.003767 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.189023 B = 7430.432271 C = 7552.978600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.075 3.925 3 C -0.177 4.177 4 N -0.689 5.689 5 C 0.152 3.848 6 C -0.247 4.247 7 C 0.044 3.956 8 N -0.346 5.346 9 N -0.367 5.367 10 C 0.170 3.830 11 H 0.079 0.921 12 C -0.135 4.135 13 C 0.017 3.983 14 C -0.607 4.607 15 H 0.066 0.934 16 C -0.038 4.038 17 N -0.937 5.937 18 Si 1.125 2.875 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.284 1.284 22 C 0.068 3.932 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.342 0.658 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.205 0.795 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.084 0.916 37 H -0.026 1.026 38 H -0.004 1.004 39 H 0.252 0.748 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.369 14.331 -6.441 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.236 4.236 4 N -0.321 5.321 5 C 0.022 3.978 6 C -0.259 4.259 7 C -0.142 4.142 8 N -0.167 5.167 9 N -0.148 5.148 10 C 0.069 3.931 11 H 0.097 0.903 12 C -0.193 4.193 13 C -0.021 4.021 14 C -0.645 4.645 15 H 0.085 0.915 16 C -0.235 4.235 17 N -0.574 5.574 18 Si 0.946 3.054 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.210 1.210 22 C -0.081 4.081 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.221 0.779 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.103 0.897 37 H -0.008 1.008 38 H 0.014 0.986 39 H 0.062 0.938 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.302 11.977 -5.184 17.935 hybrid contribution -0.138 2.419 -0.995 2.619 sum -12.441 14.395 -6.179 20.004 Atomic orbital electron populations 1.21734 0.94132 1.01726 1.01784 1.21617 0.96048 0.92827 0.92964 1.22454 1.01097 0.97240 1.02828 1.60665 1.24127 1.41099 1.06188 1.20003 0.88661 0.96818 0.92289 1.20101 1.11232 0.93297 1.01280 1.24207 0.98293 0.99826 0.91862 1.77280 1.22300 0.91543 1.25618 1.49120 1.42051 1.08112 1.15481 1.21298 0.98095 0.77879 0.95877 0.90278 1.21950 0.93601 1.00787 1.03007 1.19426 0.92153 0.94717 0.95799 1.22308 1.17056 1.05028 1.20144 0.91540 1.27505 0.92054 1.06297 0.97636 1.70865 1.37440 1.27629 1.21474 0.82843 0.76838 0.71173 0.74578 1.18637 1.20282 1.20975 1.22648 0.98308 0.98513 0.88583 0.92937 0.91331 0.93131 0.90708 0.92980 0.91240 0.92310 0.83985 0.93553 0.90828 0.77881 0.91085 0.91752 0.89686 1.00755 0.98583 0.93819 0.80308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.52 71.98 0.69 -1.29 16 2 C 0.08 1.17 3.20 44.92 0.14 1.32 16 3 C -0.18 -2.29 9.16 71.98 0.66 -1.63 16 4 N -0.69 -13.60 6.24 -495.57 -3.09 -16.70 16 5 C 0.15 3.32 5.96 85.56 0.51 3.83 16 6 C -0.25 -7.20 5.61 -20.15 -0.11 -7.31 16 7 C 0.04 1.36 11.96 85.23 1.02 2.38 16 8 N -0.35 -13.85 12.58 -57.02 -0.72 -14.57 16 9 N -0.37 -14.63 3.53 -327.47 -1.15 -15.79 16 10 C 0.17 7.23 3.35 44.99 0.15 7.38 16 11 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 12 C -0.14 -4.70 8.64 71.98 0.62 -4.08 16 13 C 0.02 0.90 4.08 29.85 0.12 1.02 16 14 C -0.61 -33.57 8.41 25.60 0.22 -33.35 16 15 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 16 C -0.04 -2.14 5.46 84.66 0.46 -1.68 16 17 N -0.94 -58.45 13.65 21.45 0.29 -58.15 16 18 Si 1.13 49.37 29.90 68.60 2.05 51.42 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.07 2.28 10.50 83.54 0.88 3.16 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 1.19 7.80 -2.39 -0.02 1.17 16 27 H 0.05 0.70 7.45 -2.39 -0.02 0.69 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.34 6.60 8.46 -89.69 -0.76 5.84 16 31 H 0.05 0.90 7.44 -2.39 -0.02 0.88 16 32 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 33 H 0.20 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.11 7.16 -2.39 -0.02 2.10 16 36 H 0.08 3.03 6.95 -2.39 -0.02 3.02 16 37 H -0.03 -1.56 8.00 -2.39 -0.02 -1.58 16 38 H 0.00 -0.23 8.01 -2.39 -0.02 -0.25 16 39 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 40 H 0.18 5.32 7.26 -2.91 -0.02 5.30 16 Total: -1.00 -67.52 328.99 3.08 -64.44 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.35 Total: 19.61 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 5.35 Total: -30.26 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -4.67 Total: -105.21 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Total: -67.52 3.08 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693495299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.553 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds