Wall clock time and date at job start Mon Mar 30 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00315 * 2 1 4 4 O 1.21688 * 119.99948 * 174.65452 * 3 2 1 5 5 C 1.46375 * 119.99818 * 354.37875 * 3 2 1 6 6 H 1.08000 * 120.00062 * 0.26983 * 5 3 2 7 7 C 1.40054 * 119.99611 * 180.27456 * 5 3 2 8 8 N 1.30671 * 120.00321 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99774 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46942 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47168 * 119.99976 * 9 7 5 12 12 H 1.48496 * 109.47281 * 240.00025 * 9 7 5 13 13 C 1.46501 * 119.99482 * 180.02562 * 2 1 3 14 14 H 1.09005 * 112.85970 * 204.81999 * 13 2 1 15 15 C 1.53842 * 113.63317 * 336.06884 * 13 2 1 16 16 C 1.53853 * 87.14459 * 139.67752 * 15 13 2 17 17 C 1.53386 * 86.97592 * 334.84482 * 16 15 13 18 18 C 1.52724 * 113.55821 * 139.80927 * 17 16 15 19 19 C 1.53149 * 109.23379 * 187.47182 * 18 17 16 20 20 C 1.52968 * 109.43369 * 302.16779 * 19 18 17 21 21 C 1.52980 * 109.70000 * 61.68568 * 20 19 18 22 22 C 1.52727 * 113.55688 * 270.63690 * 17 16 15 23 23 H 1.08997 * 109.47401 * 84.86839 * 1 2 3 24 24 H 1.08998 * 109.47511 * 204.87484 * 1 2 3 25 25 H 1.09006 * 109.46530 * 324.87290 * 1 2 3 26 26 H 0.96998 * 120.00038 * 180.02562 * 8 7 5 27 27 H 1.09003 * 113.60811 * 254.23956 * 15 13 2 28 28 H 1.08997 * 113.60739 * 25.02599 * 15 13 2 29 29 H 1.08997 * 113.63097 * 89.36967 * 16 15 13 30 30 H 1.09005 * 113.63020 * 220.23943 * 16 15 13 31 31 H 1.08997 * 109.51487 * 307.39697 * 18 17 16 32 32 H 1.09003 * 109.50946 * 67.54801 * 18 17 16 33 33 H 1.08994 * 109.47938 * 182.17542 * 19 18 17 34 34 H 1.08997 * 109.48343 * 62.15443 * 19 18 17 35 35 H 1.09002 * 109.43411 * 301.62058 * 20 19 18 36 36 H 1.09003 * 109.43761 * 181.75430 * 20 19 18 37 37 H 1.09000 * 109.47590 * 178.32316 * 21 20 19 38 38 H 1.08993 * 109.48061 * 58.30535 * 21 20 19 39 39 H 1.08997 * 109.51302 * 292.45438 * 22 17 16 40 40 H 1.09009 * 109.50948 * 52.59590 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1693 0.0982 5 6 1.4123 2.4317 -0.1242 6 1 0.3359 2.4298 -0.2114 7 6 2.1132 3.6443 -0.1300 8 7 3.4157 3.6467 -0.0250 9 14 1.1861 5.2582 -0.2891 10 1 -0.2698 4.9845 -0.3929 11 1 1.4471 6.0991 0.9067 12 1 1.6437 5.9739 -1.5071 13 6 2.1974 -1.2688 -0.0006 14 1 3.1986 -1.1800 0.4211 15 6 1.3900 -2.4472 0.5706 16 6 1.9892 -3.3046 -0.5576 17 6 2.1583 -2.0010 -1.3481 18 6 3.4725 -1.9225 -2.1221 19 6 3.6240 -0.5200 -2.7182 20 6 2.4265 -0.2186 -3.6210 21 6 1.1388 -0.2448 -2.7955 22 6 0.9431 -1.6424 -2.2009 23 1 -0.3634 0.0919 -1.0235 24 1 -0.3634 -0.9323 0.4323 25 1 -0.3632 0.8406 0.5914 26 1 3.9010 4.4865 -0.0286 27 1 1.7089 -2.7526 1.5672 28 1 0.3108 -2.3148 0.4939 29 1 2.9334 -3.7795 -0.2910 30 1 1.2772 -3.9987 -1.0041 31 1 4.3048 -2.1232 -1.4476 32 1 3.4671 -2.6604 -2.9244 33 1 4.5420 -0.4711 -3.3037 34 1 3.6664 0.2143 -1.9137 35 1 2.3677 -0.9701 -4.4084 36 1 2.5495 0.7671 -4.0698 37 1 0.2914 -0.0004 -3.4360 38 1 1.2084 0.4864 -1.9902 39 1 0.8363 -2.3690 -3.0064 40 1 0.0471 -1.6518 -1.5802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694278007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:46 Heat of formation + Delta-G solvation = -19.226132 kcal Electronic energy + Delta-G solvation = -20551.795819 eV Core-core repulsion = 17752.940623 eV Total energy + Delta-G solvation = -2798.855195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50315 -36.71243 -35.09128 -33.15711 -32.44412 -30.16645 -28.04586 -26.71152 -25.91696 -23.89757 -22.27460 -21.85755 -19.83884 -19.47518 -17.37185 -16.42858 -15.72677 -15.18558 -15.00170 -14.32476 -14.04426 -13.79665 -13.24491 -12.97133 -12.63131 -12.38465 -12.12077 -11.91073 -11.60567 -11.33203 -11.22649 -11.20263 -11.00679 -10.86475 -10.61334 -10.45805 -10.21930 -10.17828 -10.14711 -9.91651 -9.49991 -9.41295 -9.15504 -8.81780 -7.52703 -7.01699 -6.17306 -4.61996 3.12568 3.21647 3.25111 4.10293 4.56195 4.63605 4.93228 5.06061 5.17921 5.31392 5.54055 5.61647 5.77440 5.81862 5.84833 5.94222 6.00782 6.10775 6.11246 6.16601 6.23878 6.25187 6.26429 6.32237 6.42327 6.50281 6.53432 6.64067 6.69870 6.81419 6.90128 6.94533 7.05010 7.20173 7.38867 7.45941 7.69249 8.18744 8.42824 9.04716 9.48222 10.60101 10.79816 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.008468 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.506291 B = 3305.734636 C = 3523.140479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.630 5.630 3 C 0.561 3.439 4 O -0.573 6.573 5 C -0.543 4.543 6 H 0.070 0.930 7 C 0.089 3.911 8 N -0.765 5.765 9 Si 0.901 3.099 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.152 3.848 14 H 0.101 0.899 15 C -0.159 4.159 16 C -0.133 4.133 17 C -0.093 4.093 18 C -0.091 4.091 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.138 4.138 22 C -0.083 4.083 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.266 0.734 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 -9.337 -3.232 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.366 5.366 3 C 0.367 3.633 4 O -0.456 6.456 5 C -0.580 4.580 6 H 0.088 0.912 7 C -0.131 4.131 8 N -0.394 5.394 9 Si 0.726 3.274 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.046 3.954 14 H 0.119 0.881 15 C -0.197 4.197 16 C -0.171 4.171 17 C -0.095 4.095 18 C -0.129 4.129 19 C -0.168 4.168 20 C -0.144 4.144 21 C -0.175 4.175 22 C -0.121 4.121 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.375 -9.196 -3.156 10.661 hybrid contribution -0.544 0.727 -0.186 0.927 sum -4.918 -8.468 -3.342 10.348 Atomic orbital electron populations 1.21694 0.82818 1.00565 1.00462 1.47848 1.04681 1.05077 1.79011 1.18129 0.86892 0.82077 0.76194 1.90580 1.14297 1.86200 1.54528 1.21055 0.94085 0.89542 1.53275 0.91168 1.25698 0.94535 1.00119 0.92711 1.70022 1.07054 1.26977 1.35341 0.86421 0.80613 0.82170 0.78223 1.18775 1.20267 1.20233 1.22071 0.96724 0.82982 0.93623 0.88140 1.23458 1.00813 0.97433 0.98026 1.22779 1.00564 0.96112 0.97599 1.22158 0.95743 0.95554 0.95998 1.21325 0.96100 0.97070 0.98391 1.21676 0.96382 0.98199 1.00571 1.21354 0.95766 0.99942 0.97334 1.21926 0.96058 0.98537 1.00993 1.21230 0.96402 0.96853 0.97575 0.94018 0.93224 0.92000 0.92280 0.91960 0.89545 0.90591 0.91904 0.92629 0.93469 0.93724 0.88320 0.94000 0.92927 0.93766 0.87308 0.93603 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 7.36 59.85 0.44 2.04 16 2 N -0.63 -13.58 1.74 -174.85 -0.30 -13.88 16 3 C 0.56 15.10 5.69 -12.99 -0.07 15.02 16 4 O -0.57 -17.53 12.96 5.20 0.07 -17.46 16 5 C -0.54 -14.72 8.44 -35.63 -0.30 -15.02 16 6 H 0.07 1.77 6.27 -52.49 -0.33 1.44 16 7 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 8 N -0.77 -22.37 11.83 55.55 0.66 -21.71 16 9 Si 0.90 19.91 29.56 -169.99 -5.02 14.88 16 10 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.15 2.91 3.38 -67.28 -0.23 2.68 16 14 H 0.10 2.21 7.36 -51.93 -0.38 1.83 16 15 C -0.16 -2.41 7.06 -25.85 -0.18 -2.59 16 16 C -0.13 -1.85 7.23 -26.09 -0.19 -2.04 16 17 C -0.09 -1.54 0.76 -154.38 -0.12 -1.65 16 18 C -0.09 -1.56 5.09 -26.80 -0.14 -1.70 16 19 C -0.13 -2.57 5.85 -26.67 -0.16 -2.72 16 20 C -0.11 -1.94 5.86 -26.76 -0.16 -2.09 16 21 C -0.14 -2.51 4.66 -26.67 -0.12 -2.64 16 22 C -0.08 -1.33 4.43 -26.80 -0.12 -1.45 16 23 H 0.04 0.72 5.23 -51.93 -0.27 0.45 16 24 H 0.05 0.76 5.11 -51.93 -0.27 0.49 16 25 H 0.06 1.17 6.67 -51.93 -0.35 0.82 16 26 H 0.27 7.12 8.29 -40.82 -0.34 6.79 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.23 5.03 -51.93 -0.26 0.97 16 29 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 2.41 5.53 -51.93 -0.29 2.12 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.11 2.36 3.44 -51.93 -0.18 2.18 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.95 4.96 -51.92 -0.26 0.69 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -30.74 287.90 -7.64 -38.38 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.93 Total: 5.29 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.44 Total: -9.84 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.35 Total: -35.59 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.07 Total: -17.46 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.74 -7.64 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694278007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.155 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds