Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00315 * 2 1 4 4 O 1.21688 * 119.99948 * 174.65452 * 3 2 1 5 5 C 1.46375 * 119.99818 * 354.37875 * 3 2 1 6 6 H 1.08000 * 120.00062 * 0.26983 * 5 3 2 7 7 C 1.40054 * 119.99611 * 180.27456 * 5 3 2 8 8 N 1.30671 * 120.00321 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99774 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46942 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47168 * 119.99976 * 9 7 5 12 12 H 1.48496 * 109.47281 * 240.00025 * 9 7 5 13 13 C 1.46501 * 119.99482 * 180.02562 * 2 1 3 14 14 H 1.09005 * 112.85970 * 204.81999 * 13 2 1 15 15 C 1.53842 * 113.63317 * 336.06884 * 13 2 1 16 16 C 1.53853 * 87.14459 * 139.67752 * 15 13 2 17 17 C 1.53386 * 86.97592 * 334.84482 * 16 15 13 18 18 C 1.52724 * 113.55821 * 139.80927 * 17 16 15 19 19 C 1.53149 * 109.23379 * 187.47182 * 18 17 16 20 20 C 1.52968 * 109.43369 * 302.16779 * 19 18 17 21 21 C 1.52980 * 109.70000 * 61.68568 * 20 19 18 22 22 C 1.52727 * 113.55688 * 270.63690 * 17 16 15 23 23 H 1.08997 * 109.47401 * 84.86839 * 1 2 3 24 24 H 1.08998 * 109.47511 * 204.87484 * 1 2 3 25 25 H 1.09006 * 109.46530 * 324.87290 * 1 2 3 26 26 H 0.96998 * 120.00038 * 180.02562 * 8 7 5 27 27 H 1.09003 * 113.60811 * 254.23956 * 15 13 2 28 28 H 1.08997 * 113.60739 * 25.02599 * 15 13 2 29 29 H 1.08997 * 113.63097 * 89.36967 * 16 15 13 30 30 H 1.09005 * 113.63020 * 220.23943 * 16 15 13 31 31 H 1.08997 * 109.51487 * 307.39697 * 18 17 16 32 32 H 1.09003 * 109.50946 * 67.54801 * 18 17 16 33 33 H 1.08994 * 109.47938 * 182.17542 * 19 18 17 34 34 H 1.08997 * 109.48343 * 62.15443 * 19 18 17 35 35 H 1.09002 * 109.43411 * 301.62058 * 20 19 18 36 36 H 1.09003 * 109.43761 * 181.75430 * 20 19 18 37 37 H 1.09000 * 109.47590 * 178.32316 * 21 20 19 38 38 H 1.08993 * 109.48061 * 58.30535 * 21 20 19 39 39 H 1.08997 * 109.51302 * 292.45438 * 22 17 16 40 40 H 1.09009 * 109.50948 * 52.59590 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1693 0.0982 5 6 1.4123 2.4317 -0.1242 6 1 0.3359 2.4298 -0.2114 7 6 2.1132 3.6443 -0.1300 8 7 3.4157 3.6467 -0.0250 9 14 1.1861 5.2582 -0.2891 10 1 -0.2698 4.9845 -0.3929 11 1 1.4471 6.0991 0.9067 12 1 1.6437 5.9739 -1.5071 13 6 2.1974 -1.2688 -0.0006 14 1 3.1986 -1.1800 0.4211 15 6 1.3900 -2.4472 0.5706 16 6 1.9892 -3.3046 -0.5576 17 6 2.1583 -2.0010 -1.3481 18 6 3.4725 -1.9225 -2.1221 19 6 3.6240 -0.5200 -2.7182 20 6 2.4265 -0.2186 -3.6210 21 6 1.1388 -0.2448 -2.7955 22 6 0.9431 -1.6424 -2.2009 23 1 -0.3634 0.0919 -1.0235 24 1 -0.3634 -0.9323 0.4323 25 1 -0.3632 0.8406 0.5914 26 1 3.9010 4.4865 -0.0286 27 1 1.7089 -2.7526 1.5672 28 1 0.3108 -2.3148 0.4939 29 1 2.9334 -3.7795 -0.2910 30 1 1.2772 -3.9987 -1.0041 31 1 4.3048 -2.1232 -1.4476 32 1 3.4671 -2.6604 -2.9244 33 1 4.5420 -0.4711 -3.3037 34 1 3.6664 0.2143 -1.9137 35 1 2.3677 -0.9701 -4.4084 36 1 2.5495 0.7671 -4.0698 37 1 0.2914 -0.0004 -3.4360 38 1 1.2084 0.4864 -1.9902 39 1 0.8363 -2.3690 -3.0064 40 1 0.0471 -1.6518 -1.5802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694278007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = -37.317080 kcal Electronic energy + Delta-G solvation = -20552.580301 eV Core-core repulsion = 17752.940623 eV Total energy + Delta-G solvation = -2799.639678 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92593 -38.62068 -36.53991 -34.89257 -34.52446 -31.60583 -29.42309 -28.58692 -27.54556 -25.41028 -23.68723 -23.26029 -21.43001 -21.12228 -18.80240 -18.33822 -17.61553 -16.73285 -16.55227 -15.91030 -15.61761 -15.34635 -14.64725 -14.61156 -14.19477 -13.99691 -13.54234 -13.43060 -13.25463 -12.97795 -12.84568 -12.72452 -12.61511 -12.43482 -12.12267 -12.01098 -11.92971 -11.79663 -11.57128 -11.32326 -11.04034 -10.85770 -10.78210 -10.50948 -9.62223 -8.73419 -8.21789 -6.74805 1.37533 1.38414 1.54462 2.24881 2.54211 3.02209 3.60756 3.66307 3.83699 3.86142 4.01619 4.17536 4.27806 4.36617 4.48904 4.60658 4.62765 4.72877 4.78258 4.87900 4.89035 4.91480 4.92080 5.01143 5.07752 5.10844 5.16546 5.20611 5.33386 5.39171 5.42235 5.49784 5.57170 5.59092 5.71402 5.86154 5.92421 6.23546 6.61688 6.95484 7.58194 8.58678 8.78803 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.008468 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.506291 B = 3305.734636 C = 3523.140479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.626 5.626 3 C 0.552 3.448 4 O -0.624 6.624 5 C -0.565 4.565 6 H 0.085 0.915 7 C 0.032 3.968 8 N -0.820 5.820 9 Si 0.983 3.017 10 H -0.246 1.246 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.127 3.873 14 H 0.055 0.945 15 C -0.145 4.145 16 C -0.113 4.113 17 C -0.092 4.092 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.077 4.077 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.269 0.731 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -11.334 -4.199 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.360 5.360 3 C 0.358 3.642 4 O -0.511 6.511 5 C -0.602 4.602 6 H 0.103 0.897 7 C -0.183 4.183 8 N -0.451 5.451 9 Si 0.803 3.197 10 H -0.169 1.169 11 H -0.197 1.197 12 H -0.198 1.198 13 C 0.022 3.978 14 H 0.074 0.926 15 C -0.183 4.183 16 C -0.150 4.150 17 C -0.094 4.094 18 C -0.126 4.126 19 C -0.170 4.170 20 C -0.141 4.141 21 C -0.179 4.179 22 C -0.114 4.114 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.298 -11.243 -4.119 14.023 hybrid contribution 0.400 1.306 0.115 1.371 sum -6.897 -9.937 -4.004 12.742 Atomic orbital electron populations 1.21850 0.80471 1.01996 1.01262 1.47606 1.06112 1.04585 1.77704 1.18332 0.86393 0.83847 0.75637 1.90535 1.16531 1.87432 1.56582 1.21513 0.94911 0.90366 1.53418 0.89700 1.26837 0.95315 1.04457 0.91663 1.70204 1.09360 1.28206 1.37283 0.85184 0.79717 0.76519 0.78251 1.16915 1.19667 1.19805 1.22291 0.95459 0.83216 0.96825 0.92643 1.23429 1.01102 0.94841 0.98917 1.22708 1.01591 0.95031 0.95697 1.22193 0.95786 0.96620 0.94776 1.21314 0.96418 0.95794 0.99038 1.21605 0.97479 0.98625 0.99285 1.21333 0.95212 0.99869 0.97679 1.21894 0.96422 0.99389 1.00174 1.21224 0.96216 0.95695 0.98299 0.92925 0.89616 0.93242 0.92097 0.91352 0.87782 0.89959 0.88682 0.93797 0.90492 0.93637 0.93822 0.90900 0.94822 0.92128 0.91098 0.90803 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.00 7.36 127.77 0.94 3.94 16 2 N -0.63 -27.34 1.74 -825.31 -1.43 -28.77 16 3 C 0.55 31.23 5.69 86.36 0.49 31.72 16 4 O -0.62 -41.05 12.96 -4.31 -0.06 -41.11 16 5 C -0.57 -31.67 8.44 24.83 0.21 -31.46 16 6 H 0.08 4.32 6.27 -2.91 -0.02 4.30 16 7 C 0.03 1.80 5.50 85.31 0.47 2.27 16 8 N -0.82 -50.65 11.83 21.84 0.26 -50.39 16 9 Si 0.98 41.71 29.56 68.60 2.03 43.73 16 10 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.13 4.87 3.38 45.41 0.15 5.03 16 14 H 0.06 2.60 7.36 -2.38 -0.02 2.59 16 15 C -0.15 -3.95 7.06 31.17 0.22 -3.73 16 16 C -0.11 -2.68 7.23 31.01 0.22 -2.45 16 17 C -0.09 -2.85 0.76 -52.10 -0.04 -2.89 16 18 C -0.09 -2.94 5.09 30.55 0.16 -2.78 16 19 C -0.13 -5.35 5.85 30.63 0.18 -5.17 16 20 C -0.10 -3.71 5.86 30.58 0.18 -3.53 16 21 C -0.14 -4.94 4.66 30.63 0.14 -4.80 16 22 C -0.08 -2.18 4.43 30.55 0.14 -2.05 16 23 H 0.05 1.72 5.23 -2.39 -0.01 1.70 16 24 H 0.09 2.31 5.11 -2.39 -0.01 2.30 16 25 H 0.05 1.82 6.67 -2.38 -0.02 1.80 16 26 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.10 2.47 5.03 -2.39 -0.01 2.46 16 29 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 30 H 0.09 1.75 8.10 -2.38 -0.02 1.73 16 31 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 2.28 5.53 -2.39 -0.01 2.27 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 3.09 3.44 -2.39 -0.01 3.08 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.95 4.96 -2.38 -0.01 1.94 16 Total: -1.00 -73.15 287.90 5.29 -67.85 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.04 Total: 24.58 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.46 Total: -15.90 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.18 Total: -79.16 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.06 Total: -41.11 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -73.15 5.29 -67.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694278007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.537 kcal (2) G-P(sol) polarization free energy of solvation -73.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds