Wall clock time and date at job start Mon Mar 30 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 N 1.46504 * 109.46847 * 179.97438 * 3 2 1 5 5 C 1.36876 * 126.39978 * 264.97292 * 4 3 2 6 6 C 1.34672 * 106.81902 * 180.02562 * 5 4 3 7 7 N 1.34133 * 108.01658 * 359.77833 * 6 5 4 8 8 C 1.30495 * 109.25626 * 0.37040 * 7 6 5 9 9 C 1.50704 * 125.64652 * 179.89073 * 8 7 6 10 10 N 1.46895 * 109.47165 * 269.69326 * 9 8 7 11 11 C 1.46904 * 110.99693 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47046 * 35.00180 * 11 10 9 13 13 C 1.52999 * 109.47024 * 275.00073 * 11 10 9 14 14 C 1.52999 * 109.46953 * 154.99991 * 11 10 9 15 15 C 1.50702 * 109.47522 * 295.00224 * 14 11 10 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 11 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 H 1.09000 * 109.46613 * 60.00359 * 1 2 3 24 24 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47373 * 300.00871 * 1 2 3 26 26 H 1.08999 * 109.47373 * 239.99129 * 2 1 3 27 27 H 1.09000 * 109.46613 * 119.99641 * 2 1 3 28 28 H 1.09002 * 109.47257 * 59.99531 * 3 2 1 29 29 H 1.09000 * 109.47104 * 299.99341 * 3 2 1 30 30 H 1.07996 * 126.58912 * 0.05578 * 5 4 3 31 31 H 1.07995 * 125.98715 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.46881 * 149.69287 * 9 8 7 33 33 H 1.09005 * 109.47168 * 29.69735 * 9 8 7 34 34 H 1.00896 * 111.00318 * 303.95565 * 10 9 8 35 35 H 1.08994 * 109.47531 * 60.00488 * 13 11 10 36 36 H 1.09007 * 109.46949 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.47296 * 299.99953 * 13 11 10 38 38 H 1.09000 * 109.47527 * 174.99823 * 14 11 10 39 39 H 1.09001 * 109.47054 * 54.99913 * 14 11 10 40 40 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3168 1.5391 1.0984 6 6 5.5859 1.5000 0.6493 7 7 5.5498 1.3778 -0.6860 8 6 4.3068 1.3475 -1.0819 9 6 3.8428 1.2212 -2.5102 10 7 3.6910 2.5597 -3.0960 11 6 3.2383 2.4756 -4.4910 12 1 2.5592 1.6303 -4.6022 13 6 4.4472 2.2828 -5.4087 14 6 2.5111 3.7672 -4.8699 15 6 1.2533 3.8949 -4.0496 16 1 0.9980 3.1309 -3.3303 17 6 0.4282 4.9865 -4.2183 18 7 -0.6723 5.0952 -3.5063 19 14 0.8694 6.3076 -5.4630 20 1 1.6939 7.3525 -4.8045 21 1 1.6389 5.6998 -6.5782 22 1 -0.3737 6.9207 -5.9959 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 4.0004 1.6289 2.1271 31 1 6.4763 1.5533 1.2580 32 1 2.8846 0.7023 -2.5364 33 1 4.5781 0.6554 -3.0824 34 1 3.0628 3.1261 -2.5458 35 1 4.9653 1.3626 -5.1388 36 1 4.1113 2.2208 -6.4439 37 1 5.1263 3.1281 -5.2975 38 1 2.2533 3.7420 -5.9287 39 1 3.1605 4.6206 -4.6744 40 1 -1.2548 5.8611 -3.6277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:44 Heat of formation + Delta-G solvation = 42.029053 kcal Electronic energy + Delta-G solvation = -18859.908606 eV Core-core repulsion = 16096.002386 eV Total energy + Delta-G solvation = -2763.906220 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.85802 -36.78713 -35.57415 -32.92455 -31.86977 -31.54507 -28.70515 -27.86987 -26.35276 -24.74425 -22.53361 -21.92204 -21.12126 -19.67139 -19.24855 -16.89112 -16.87959 -15.42482 -15.35236 -15.04163 -14.55569 -14.21627 -13.98732 -13.73039 -13.10789 -13.00736 -12.64952 -12.34463 -12.26236 -12.01191 -11.87714 -11.78560 -11.60506 -11.44537 -11.13177 -10.90240 -10.80331 -10.34406 -9.86318 -9.66274 -9.54269 -9.34867 -9.29149 -8.61852 -8.17393 -7.76281 -6.14545 -4.12802 2.25424 2.97009 3.27986 3.35405 3.39637 3.40023 4.39225 4.64812 4.67840 4.77424 4.89951 5.05121 5.20186 5.23054 5.27939 5.47135 5.52065 5.64168 5.66949 5.77756 5.83333 5.89868 5.97094 6.05625 6.06824 6.18993 6.19409 6.42553 6.54938 6.68649 6.79986 6.99669 7.12388 7.23301 7.40858 7.69020 7.80795 8.10298 8.38918 8.41196 8.85130 9.49058 10.98151 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.006598 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.048508 B = 4242.801010 C = 5028.145632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.098 3.902 4 N -0.450 5.450 5 C -0.064 4.064 6 C -0.034 4.034 7 N -0.482 5.482 8 C 0.222 3.778 9 C 0.144 3.856 10 N -0.674 5.674 11 C 0.098 3.902 12 H 0.037 0.963 13 C -0.139 4.139 14 C -0.018 4.018 15 C -0.524 4.524 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.902 5.902 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.265 1.265 22 H -0.289 1.289 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.355 0.645 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -9.202 7.123 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.025 4.025 4 N -0.133 5.133 5 C -0.197 4.197 6 C -0.183 4.183 7 N -0.201 5.201 8 C -0.040 4.040 9 C 0.013 3.987 10 N -0.309 5.309 11 C -0.012 4.012 12 H 0.055 0.945 13 C -0.197 4.197 14 C -0.056 4.056 15 C -0.562 4.562 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.189 1.189 22 H -0.215 1.215 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.186 0.814 31 H 0.182 0.818 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.177 0.823 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.898 -9.073 6.469 12.608 hybrid contribution -1.571 0.655 0.322 1.732 sum 4.328 -8.418 6.791 11.649 Atomic orbital electron populations 1.21708 0.94063 1.02217 1.02946 1.21861 0.97083 0.95515 1.02834 1.22058 0.76301 0.98584 1.05521 1.45501 1.07383 1.53471 1.06914 1.22613 0.91506 1.12943 0.92654 1.22236 0.96117 1.08333 0.91604 1.70234 1.18695 1.19586 1.11540 1.23224 0.85610 1.04456 0.90755 1.20248 0.99273 0.93313 0.85902 1.60554 1.55901 1.10764 1.03705 1.21426 0.93767 0.99180 0.86786 0.94530 1.21832 0.98536 1.01079 0.98241 1.19785 0.95638 0.92998 0.97140 1.21034 1.05203 1.07655 1.22301 0.91492 1.24986 0.94657 0.97912 0.95601 1.69899 1.12889 1.30409 1.40820 0.86751 0.77852 0.82145 0.82400 1.20234 1.18930 1.21498 0.91469 0.92199 0.92391 0.91286 0.91631 0.88979 0.88084 0.81409 0.81781 0.94278 0.88831 0.82345 0.93833 0.93209 0.92476 0.95820 0.95947 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.51 6.26 -26.73 -0.17 -1.68 16 3 C 0.10 1.28 5.68 -4.04 -0.02 1.25 16 4 N -0.45 -6.71 2.75 -113.90 -0.31 -7.02 16 5 C -0.06 -0.87 11.58 -16.56 -0.19 -1.06 16 6 C -0.03 -0.51 11.87 -17.81 -0.21 -0.73 16 7 N -0.48 -8.72 11.25 -10.81 -0.12 -8.84 16 8 C 0.22 3.81 7.41 -155.42 -1.15 2.65 16 9 C 0.14 2.41 5.64 -4.98 -0.03 2.39 16 10 N -0.67 -13.02 6.30 -107.99 -0.68 -13.70 16 11 C 0.10 1.92 2.59 -67.71 -0.18 1.74 16 12 H 0.04 0.72 7.80 -51.93 -0.40 0.32 16 13 C -0.14 -2.36 9.41 37.16 0.35 -2.01 16 14 C -0.02 -0.42 3.64 -27.88 -0.10 -0.52 16 15 C -0.52 -13.96 8.67 -34.44 -0.30 -14.26 16 16 H 0.07 1.87 7.73 -52.49 -0.41 1.46 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 19 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.54 7.92 -51.93 -0.41 1.13 16 30 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.04 0.62 7.27 -51.93 -0.38 0.25 16 33 H 0.09 1.52 7.44 -51.93 -0.39 1.14 16 34 H 0.36 7.55 7.20 -39.29 -0.28 7.27 16 35 H 0.04 0.67 7.45 -51.93 -0.39 0.29 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 39 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -30.40 327.27 -8.60 -39.00 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.79 Total: 6.20 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.73 Total: -11.58 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.34 Total: -55.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.40 -8.60 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.033 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds