Wall clock time and date at job start Mon Mar 30 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 N 1.46504 * 109.46847 * 179.97438 * 3 2 1 5 5 C 1.36876 * 126.39978 * 264.97292 * 4 3 2 6 6 C 1.34672 * 106.81902 * 180.02562 * 5 4 3 7 7 N 1.34133 * 108.01658 * 359.77833 * 6 5 4 8 8 C 1.30495 * 109.25626 * 0.37040 * 7 6 5 9 9 C 1.50704 * 125.64652 * 179.89073 * 8 7 6 10 10 N 1.46895 * 109.47165 * 269.69326 * 9 8 7 11 11 C 1.46904 * 110.99693 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47046 * 35.00180 * 11 10 9 13 13 C 1.52999 * 109.47024 * 275.00073 * 11 10 9 14 14 C 1.52999 * 109.46953 * 154.99991 * 11 10 9 15 15 C 1.50702 * 109.47522 * 295.00224 * 14 11 10 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 11 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 H 1.09000 * 109.46613 * 60.00359 * 1 2 3 24 24 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47373 * 300.00871 * 1 2 3 26 26 H 1.08999 * 109.47373 * 239.99129 * 2 1 3 27 27 H 1.09000 * 109.46613 * 119.99641 * 2 1 3 28 28 H 1.09002 * 109.47257 * 59.99531 * 3 2 1 29 29 H 1.09000 * 109.47104 * 299.99341 * 3 2 1 30 30 H 1.07996 * 126.58912 * 0.05578 * 5 4 3 31 31 H 1.07995 * 125.98715 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.46881 * 149.69287 * 9 8 7 33 33 H 1.09005 * 109.47168 * 29.69735 * 9 8 7 34 34 H 1.00896 * 111.00318 * 303.95565 * 10 9 8 35 35 H 1.08994 * 109.47531 * 60.00488 * 13 11 10 36 36 H 1.09007 * 109.46949 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.47296 * 299.99953 * 13 11 10 38 38 H 1.09000 * 109.47527 * 174.99823 * 14 11 10 39 39 H 1.09001 * 109.47054 * 54.99913 * 14 11 10 40 40 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3168 1.5391 1.0984 6 6 5.5859 1.5000 0.6493 7 7 5.5498 1.3778 -0.6860 8 6 4.3068 1.3475 -1.0819 9 6 3.8428 1.2212 -2.5102 10 7 3.6910 2.5597 -3.0960 11 6 3.2383 2.4756 -4.4910 12 1 2.5592 1.6303 -4.6022 13 6 4.4472 2.2828 -5.4087 14 6 2.5111 3.7672 -4.8699 15 6 1.2533 3.8949 -4.0496 16 1 0.9980 3.1309 -3.3303 17 6 0.4282 4.9865 -4.2183 18 7 -0.6723 5.0952 -3.5063 19 14 0.8694 6.3076 -5.4630 20 1 1.6939 7.3525 -4.8045 21 1 1.6389 5.6998 -6.5782 22 1 -0.3737 6.9207 -5.9959 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 4.0004 1.6289 2.1271 31 1 6.4763 1.5533 1.2580 32 1 2.8846 0.7023 -2.5364 33 1 4.5781 0.6554 -3.0824 34 1 3.0628 3.1261 -2.5458 35 1 4.9653 1.3626 -5.1388 36 1 4.1113 2.2208 -6.4439 37 1 5.1263 3.1281 -5.2975 38 1 2.2533 3.7420 -5.9287 39 1 3.1605 4.6206 -4.6744 40 1 -1.2548 5.8611 -3.6277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695811595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:44 Heat of formation + Delta-G solvation = 23.462893 kcal Electronic energy + Delta-G solvation = -18860.713695 eV Core-core repulsion = 16096.002386 eV Total energy + Delta-G solvation = -2764.711309 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.03296 -38.35842 -36.62378 -34.87912 -33.15773 -32.93705 -30.15859 -29.51077 -27.41448 -26.11568 -24.37425 -22.91957 -22.25733 -21.19148 -20.59663 -18.95970 -18.03952 -16.81611 -16.58378 -16.42200 -16.19071 -15.72374 -15.15729 -14.82066 -14.64387 -14.37044 -14.09970 -13.72063 -13.58174 -13.49613 -13.38625 -13.13373 -12.92795 -12.58380 -12.52962 -12.40407 -12.09124 -11.84086 -11.77912 -11.33095 -11.26282 -10.89120 -10.75535 -10.53567 -9.41142 -9.21120 -8.28910 -6.30690 1.08894 1.36213 1.38180 1.48725 1.85524 2.18538 2.36362 3.05878 3.38099 3.59956 3.65393 3.79233 3.91369 4.18368 4.21621 4.26543 4.36187 4.48674 4.52558 4.56421 4.62310 4.67828 4.76794 4.85460 4.99491 5.00981 5.04219 5.12397 5.23493 5.30089 5.31827 5.42116 5.48787 5.67181 5.89874 6.16057 6.23367 6.32290 6.45031 6.73444 7.21182 7.33582 8.86237 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.006598 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.048508 B = 4242.801010 C = 5028.145632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.098 3.902 4 N -0.451 5.451 5 C -0.050 4.050 6 C -0.055 4.055 7 N -0.513 5.513 8 C 0.196 3.804 9 C 0.151 3.849 10 N -0.678 5.678 11 C 0.100 3.900 12 H 0.032 0.968 13 C -0.131 4.131 14 C -0.014 4.014 15 C -0.521 4.521 16 H 0.040 0.960 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.249 1.249 22 H -0.286 1.286 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.208 0.792 31 H 0.189 0.811 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.340 0.660 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.027 0.973 39 H 0.017 0.983 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -9.557 7.477 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.024 4.024 4 N -0.133 5.133 5 C -0.184 4.184 6 C -0.203 4.203 7 N -0.233 5.233 8 C -0.067 4.067 9 C 0.020 3.980 10 N -0.312 5.312 11 C -0.009 4.009 12 H 0.050 0.950 13 C -0.189 4.189 14 C -0.052 4.052 15 C -0.559 4.559 16 H 0.058 0.942 17 C -0.184 4.184 18 N -0.584 5.584 19 Si 0.765 3.235 20 H -0.200 1.200 21 H -0.172 1.172 22 H -0.212 1.212 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.206 0.794 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.807 -9.450 6.806 13.489 hybrid contribution -1.854 0.711 0.323 2.012 sum 4.952 -8.738 7.129 12.317 Atomic orbital electron populations 1.21683 0.93533 1.03039 1.02310 1.21785 0.97362 0.94123 1.03030 1.22123 0.75497 0.99795 1.04955 1.45646 1.07948 1.52765 1.06906 1.23263 0.90852 1.10469 0.93780 1.22762 0.97860 1.08836 0.90850 1.70168 1.19357 1.20312 1.13421 1.23122 0.86001 1.06368 0.91163 1.20171 0.99503 0.91952 0.86376 1.60626 1.55033 1.12099 1.03428 1.21379 0.94749 0.97097 0.87698 0.94974 1.21757 0.97132 1.01688 0.98309 1.19730 0.94185 0.94700 0.96565 1.21300 1.06289 1.06634 1.21688 0.94152 1.25809 0.94649 1.00313 0.97614 1.70028 1.14197 1.31375 1.42776 0.85803 0.77772 0.79434 0.80500 1.19971 1.17238 1.21219 0.93884 0.90653 0.91213 0.92448 0.89947 0.86997 0.91162 0.77542 0.79358 0.93979 0.88324 0.84117 0.92240 0.91695 0.92897 0.95436 0.96428 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.28 16 2 C -0.12 -2.68 6.26 30.60 0.19 -2.49 16 3 C 0.10 2.53 5.68 86.38 0.49 3.02 16 4 N -0.45 -13.01 2.75 -514.28 -1.41 -14.43 16 5 C -0.05 -1.25 11.58 83.09 0.96 -0.29 16 6 C -0.06 -1.57 11.87 83.52 0.99 -0.58 16 7 N -0.51 -18.24 11.25 -188.13 -2.12 -20.35 16 8 C 0.20 6.67 7.41 138.13 1.02 7.69 16 9 C 0.15 5.10 5.64 85.56 0.48 5.58 16 10 N -0.68 -26.45 6.30 -495.57 -3.12 -29.58 16 11 C 0.10 3.89 2.59 44.91 0.12 4.01 16 12 H 0.03 1.27 7.80 -2.39 -0.02 1.25 16 13 C -0.13 -4.23 9.41 71.98 0.68 -3.55 16 14 C -0.01 -0.65 3.64 29.85 0.11 -0.54 16 15 C -0.52 -28.26 8.67 25.60 0.22 -28.04 16 16 H 0.04 2.35 7.73 -2.91 -0.02 2.33 16 17 C 0.01 0.77 5.47 84.65 0.46 1.24 16 18 N -0.94 -56.51 13.96 21.45 0.30 -56.21 16 19 Si 0.94 43.75 27.47 68.60 1.88 45.64 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.36 7.67 -2.39 -0.02 1.34 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 2.26 7.92 -2.39 -0.02 2.24 16 30 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.04 1.38 7.27 -2.39 -0.02 1.36 16 33 H 0.10 3.19 7.44 -2.38 -0.02 3.17 16 34 H 0.34 14.92 7.20 -89.70 -0.65 14.27 16 35 H 0.06 1.72 7.45 -2.39 -0.02 1.71 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 39 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -65.58 327.27 2.27 -63.31 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.30 Total: 27.85 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 6.44 Total: -16.22 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -6.35 Total: -120.57 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -65.58 2.27 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.773 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds