Wall clock time and date at job start Mon Mar 30 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 N 1.46905 * 109.46592 * 180.02562 * 3 2 1 5 5 C 1.46896 * 110.99873 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47317 * 179.97438 * 5 4 3 7 7 N 1.30498 * 125.65146 * 269.95600 * 6 5 4 8 8 C 1.34128 * 109.25660 * 180.02562 * 7 6 5 9 9 C 1.34669 * 108.02336 * 0.02562 * 8 7 6 10 10 N 1.35044 * 125.65011 * 89.99497 * 6 5 4 11 11 C 1.46503 * 126.39660 * 359.70746 * 10 6 5 12 12 H 1.09004 * 109.47193 * 359.97438 * 11 10 6 13 13 C 1.53000 * 109.47187 * 119.99644 * 11 10 6 14 14 C 1.52997 * 109.46923 * 239.99649 * 11 10 6 15 15 C 1.50708 * 109.46967 * 174.99881 * 14 11 10 16 16 H 1.07990 * 120.00176 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99718 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00121 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47068 * 59.99970 * 19 17 15 21 21 H 1.48496 * 109.47217 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47221 * 299.99988 * 19 17 15 23 23 H 1.09002 * 109.46323 * 59.99956 * 1 2 3 24 24 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46829 * 300.00192 * 1 2 3 26 26 H 1.08993 * 109.47147 * 239.99423 * 2 1 3 27 27 H 1.09005 * 109.46730 * 119.99404 * 2 1 3 28 28 H 1.08991 * 109.47357 * 60.00448 * 3 2 1 29 29 H 1.08997 * 109.47232 * 299.99068 * 3 2 1 30 30 H 1.00897 * 110.99926 * 303.94924 * 4 3 2 31 31 H 1.08993 * 109.47461 * 59.99396 * 5 4 3 32 32 H 1.09011 * 109.47020 * 299.99537 * 5 4 3 33 33 H 1.07998 * 125.98727 * 179.97438 * 8 7 6 34 34 H 1.07996 * 126.59301 * 180.02562 * 9 8 7 35 35 H 1.08996 * 109.46977 * 60.00331 * 13 11 10 36 36 H 1.09005 * 109.46724 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.47192 * 299.99847 * 13 11 10 38 38 H 1.08994 * 109.47742 * 294.99788 * 14 11 10 39 39 H 1.09004 * 109.47407 * 55.00339 * 14 11 10 40 40 H 0.96999 * 119.99965 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5420 2.7737 0.0000 7 7 6.3024 2.7537 1.0603 8 6 7.5887 2.7198 0.6817 9 6 7.6269 2.7193 -0.6644 10 7 6.3288 2.7530 -1.0974 11 6 5.8772 2.7595 -2.4911 12 1 4.7878 2.7836 -2.5200 13 6 6.4340 3.9947 -3.2019 14 6 6.3779 1.4969 -3.1953 15 6 5.8124 1.4425 -4.5911 16 1 5.1614 2.2298 -4.9411 17 6 6.1261 0.3873 -5.4214 18 7 6.9193 -0.5713 -4.9953 19 14 5.4257 0.3201 -7.1518 20 1 5.8668 1.5176 -7.9112 21 1 5.9116 -0.9054 -7.8352 22 1 3.9425 0.2951 -7.0849 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6768 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.8709 0.9163 0.7805 31 1 3.6864 3.3367 0.8903 32 1 3.6857 3.3377 -0.8897 33 1 8.4438 2.6978 1.3409 34 1 8.5116 2.6957 -1.2833 35 1 7.5233 3.9703 -3.1731 36 1 6.0984 3.9993 -4.2389 37 1 6.0773 4.8942 -2.7002 38 1 7.4665 1.5159 -3.2449 39 1 6.0549 0.6176 -2.6379 40 1 7.1398 -1.3138 -5.5793 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695879762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:34 Heat of formation + Delta-G solvation = 37.457868 kcal Electronic energy + Delta-G solvation = -18663.734794 eV Core-core repulsion = 15899.630353 eV Total energy + Delta-G solvation = -2764.104441 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.57113 -36.70274 -35.54818 -33.11118 -32.62878 -30.02576 -29.50426 -27.12156 -26.20693 -23.95603 -23.50696 -21.74061 -21.31469 -20.08816 -18.73778 -16.91254 -16.11945 -15.65015 -15.28172 -14.64126 -14.60422 -14.10983 -13.95272 -13.58722 -13.16938 -13.07637 -12.82540 -12.40932 -12.07509 -11.96449 -11.93235 -11.57725 -11.50158 -11.03510 -10.96595 -10.93778 -10.69545 -10.61947 -10.18715 -9.97271 -9.53517 -9.25852 -8.76830 -8.46248 -8.33676 -7.84950 -6.10676 -4.15004 2.60958 3.26646 3.31871 3.32741 3.48397 3.55765 4.35998 4.41027 4.85010 4.98343 5.08376 5.23316 5.25220 5.37963 5.42059 5.51918 5.62173 5.64374 5.71113 5.77466 5.81619 5.91738 5.99181 6.00877 6.20646 6.21430 6.32021 6.37487 6.59708 6.66742 6.97403 7.08518 7.28686 7.45669 7.48463 7.59473 7.75334 7.91988 8.21942 8.60824 8.88994 9.49186 11.00514 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.007390 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.995223 B = 3787.883529 C = 5397.836943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.061 3.939 4 N -0.682 5.682 5 C 0.151 3.849 6 C 0.192 3.808 7 N -0.501 5.501 8 C -0.049 4.049 9 C -0.037 4.037 10 N -0.421 5.421 11 C 0.127 3.873 12 H 0.092 0.908 13 C -0.147 4.147 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.347 0.653 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.021 0.979 39 H 0.027 0.973 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 5.542 8.301 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.068 4.068 4 N -0.314 5.314 5 C 0.021 3.979 6 C -0.070 4.070 7 N -0.221 5.221 8 C -0.198 4.198 9 C -0.174 4.174 10 N -0.100 5.100 11 C 0.026 3.974 12 H 0.110 0.890 13 C -0.205 4.205 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.045 0.955 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.103 5.326 8.192 12.080 hybrid contribution 0.020 0.028 -0.954 0.954 sum -7.083 5.354 7.238 11.456 Atomic orbital electron populations 1.21719 0.95720 1.01653 1.01600 1.21507 0.95333 0.96423 1.02986 1.21985 0.87217 0.97231 1.00331 1.60411 1.07151 1.13001 1.50859 1.20027 0.85469 0.90792 1.01622 1.22742 0.94545 1.07632 0.82110 1.70078 1.02346 1.20949 1.28760 1.22072 0.94490 1.10432 0.92766 1.22624 0.88015 1.10446 0.96297 1.45823 1.05887 1.49964 1.08376 1.21958 0.99936 0.99624 0.75901 0.88985 1.22050 1.01363 0.95311 1.01763 1.19370 0.96841 0.90043 0.94919 1.20958 1.30071 1.07602 0.97404 0.92376 1.24975 0.95013 0.95456 0.98591 1.69958 1.35383 1.10790 1.36633 0.86625 0.79483 0.77469 0.84256 1.20175 1.21211 1.20123 0.92586 0.92636 0.93080 0.90608 0.92235 0.95511 0.90900 0.83496 0.92757 0.89787 0.82074 0.81548 0.92587 0.89750 0.94154 0.96065 0.95486 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.45 6.19 -26.73 -0.17 -1.61 16 3 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16 4 N -0.68 -10.28 6.49 -115.06 -0.75 -11.02 16 5 C 0.15 2.30 5.82 -4.98 -0.03 2.27 16 6 C 0.19 3.51 7.41 -155.42 -1.15 2.36 16 7 N -0.50 -9.46 11.25 -10.82 -0.12 -9.58 16 8 C -0.05 -0.85 11.87 -17.81 -0.21 -1.07 16 9 C -0.04 -0.68 10.70 -16.56 -0.18 -0.85 16 10 N -0.42 -8.03 2.61 -106.83 -0.28 -8.30 16 11 C 0.13 2.53 2.94 -67.93 -0.20 2.33 16 12 H 0.09 1.82 6.68 -51.93 -0.35 1.48 16 13 C -0.15 -2.59 9.07 37.16 0.34 -2.26 16 14 C 0.03 0.64 4.45 -27.88 -0.12 0.52 16 15 C -0.52 -13.83 8.41 -34.44 -0.29 -14.12 16 16 H 0.06 1.46 7.05 -52.49 -0.37 1.09 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 19 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.35 5.23 8.72 -39.29 -0.34 4.89 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.22 7.09 -51.92 -0.37 0.85 16 33 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 35 H 0.06 0.98 7.96 -51.93 -0.41 0.56 16 36 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -29.95 330.78 -9.04 -38.99 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.83 Total: 5.50 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.76 Total: -11.15 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.41 Total: -54.19 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.95 -9.04 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695879762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.443 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds