Wall clock time and date at job start Mon Mar 30 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 N 1.46905 * 109.46592 * 180.02562 * 3 2 1 5 5 C 1.46896 * 110.99873 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47317 * 179.97438 * 5 4 3 7 7 N 1.30498 * 125.65146 * 269.95600 * 6 5 4 8 8 C 1.34128 * 109.25660 * 180.02562 * 7 6 5 9 9 C 1.34669 * 108.02336 * 0.02562 * 8 7 6 10 10 N 1.35044 * 125.65011 * 89.99497 * 6 5 4 11 11 C 1.46503 * 126.39660 * 359.70746 * 10 6 5 12 12 H 1.09004 * 109.47193 * 359.97438 * 11 10 6 13 13 C 1.53000 * 109.47187 * 119.99644 * 11 10 6 14 14 C 1.52997 * 109.46923 * 239.99649 * 11 10 6 15 15 C 1.50708 * 109.46967 * 174.99881 * 14 11 10 16 16 H 1.07990 * 120.00176 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99718 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00121 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47068 * 59.99970 * 19 17 15 21 21 H 1.48496 * 109.47217 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47221 * 299.99988 * 19 17 15 23 23 H 1.09002 * 109.46323 * 59.99956 * 1 2 3 24 24 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46829 * 300.00192 * 1 2 3 26 26 H 1.08993 * 109.47147 * 239.99423 * 2 1 3 27 27 H 1.09005 * 109.46730 * 119.99404 * 2 1 3 28 28 H 1.08991 * 109.47357 * 60.00448 * 3 2 1 29 29 H 1.08997 * 109.47232 * 299.99068 * 3 2 1 30 30 H 1.00897 * 110.99926 * 303.94924 * 4 3 2 31 31 H 1.08993 * 109.47461 * 59.99396 * 5 4 3 32 32 H 1.09011 * 109.47020 * 299.99537 * 5 4 3 33 33 H 1.07998 * 125.98727 * 179.97438 * 8 7 6 34 34 H 1.07996 * 126.59301 * 180.02562 * 9 8 7 35 35 H 1.08996 * 109.46977 * 60.00331 * 13 11 10 36 36 H 1.09005 * 109.46724 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.47192 * 299.99847 * 13 11 10 38 38 H 1.08994 * 109.47742 * 294.99788 * 14 11 10 39 39 H 1.09004 * 109.47407 * 55.00339 * 14 11 10 40 40 H 0.96999 * 119.99965 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5420 2.7737 0.0000 7 7 6.3024 2.7537 1.0603 8 6 7.5887 2.7198 0.6817 9 6 7.6269 2.7193 -0.6644 10 7 6.3288 2.7530 -1.0974 11 6 5.8772 2.7595 -2.4911 12 1 4.7878 2.7836 -2.5200 13 6 6.4340 3.9947 -3.2019 14 6 6.3779 1.4969 -3.1953 15 6 5.8124 1.4425 -4.5911 16 1 5.1614 2.2298 -4.9411 17 6 6.1261 0.3873 -5.4214 18 7 6.9193 -0.5713 -4.9953 19 14 5.4257 0.3201 -7.1518 20 1 5.8668 1.5176 -7.9112 21 1 5.9116 -0.9054 -7.8352 22 1 3.9425 0.2951 -7.0849 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6768 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.8709 0.9163 0.7805 31 1 3.6864 3.3367 0.8903 32 1 3.6857 3.3377 -0.8897 33 1 8.4438 2.6978 1.3409 34 1 8.5116 2.6957 -1.2833 35 1 7.5233 3.9703 -3.1731 36 1 6.0984 3.9993 -4.2389 37 1 6.0773 4.8942 -2.7002 38 1 7.4665 1.5159 -3.2449 39 1 6.0549 0.6176 -2.6379 40 1 7.1398 -1.3138 -5.5793 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695879762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:34 Heat of formation + Delta-G solvation = 19.682827 kcal Electronic energy + Delta-G solvation = -18664.505578 eV Core-core repulsion = 15899.630353 eV Total energy + Delta-G solvation = -2764.875225 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.00163 -37.77707 -37.23528 -34.61947 -34.11807 -31.66399 -30.75493 -28.94313 -27.33790 -25.76303 -24.65272 -23.35106 -22.28617 -21.58848 -20.19425 -18.70534 -17.73741 -16.88163 -16.73482 -16.35143 -15.73957 -15.44251 -15.25365 -15.04276 -14.58782 -14.40350 -14.19608 -13.90958 -13.70992 -13.17039 -13.09845 -12.93650 -12.88006 -12.70414 -12.49389 -12.37339 -11.99687 -11.87497 -11.71930 -11.61098 -11.40211 -10.90491 -10.58647 -10.33226 -9.48654 -9.22096 -8.21537 -6.33017 1.18081 1.42057 1.44376 1.51879 2.02024 2.16781 2.42201 3.13489 3.24784 3.60039 3.85712 3.89131 4.08510 4.16864 4.21389 4.37467 4.39896 4.46221 4.53488 4.62871 4.68697 4.79069 4.81636 4.89527 4.92412 4.97860 5.20557 5.21477 5.32153 5.34978 5.40502 5.41601 5.66009 5.72987 5.90667 6.00338 6.10600 6.32189 6.41724 6.80881 7.18617 7.36388 8.90604 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.007390 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.995223 B = 3787.883529 C = 5397.836943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.064 3.936 4 N -0.702 5.702 5 C 0.154 3.846 6 C 0.188 3.812 7 N -0.518 5.518 8 C -0.049 4.049 9 C -0.057 4.057 10 N -0.432 5.432 11 C 0.140 3.860 12 H 0.095 0.905 13 C -0.138 4.138 14 C 0.040 3.960 15 C -0.530 4.530 16 H 0.073 0.927 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.262 1.262 21 H -0.288 1.288 22 H -0.267 1.267 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.343 0.657 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.190 0.810 34 H 0.176 0.824 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.065 0.935 38 H -0.004 1.004 39 H -0.017 1.017 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 6.892 8.156 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.064 4.064 4 N -0.334 5.334 5 C 0.023 3.977 6 C -0.075 4.075 7 N -0.238 5.238 8 C -0.197 4.197 9 C -0.192 4.192 10 N -0.112 5.112 11 C 0.038 3.962 12 H 0.113 0.887 13 C -0.196 4.196 14 C 0.002 3.998 15 C -0.569 4.569 16 H 0.091 0.909 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.788 3.212 20 H -0.187 1.187 21 H -0.214 1.214 22 H -0.192 1.192 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.207 0.793 34 H 0.193 0.807 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.015 0.985 39 H 0.001 0.999 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.417 6.698 8.060 13.442 hybrid contribution 0.453 -0.425 -0.824 1.032 sum -7.964 6.273 7.236 12.456 Atomic orbital electron populations 1.21683 0.93877 1.02297 1.02337 1.21487 0.96901 0.95881 1.01832 1.22028 0.85522 0.97716 1.01172 1.60420 1.08951 1.13023 1.51035 1.20120 0.83656 0.91152 1.02734 1.23380 0.95849 1.06577 0.81678 1.70121 1.02970 1.21694 1.29039 1.22571 0.94990 1.09168 0.92967 1.22939 0.88161 1.11147 0.96960 1.45811 1.06448 1.50828 1.08090 1.21628 0.99943 0.98164 0.76422 0.88704 1.21959 1.01185 0.95024 1.01437 1.19111 0.95127 0.90911 0.94668 1.21392 1.29703 1.07749 0.98022 0.90926 1.25926 0.95319 0.95104 1.03075 1.70112 1.37161 1.11651 1.38305 0.85519 0.78985 0.77707 0.78984 1.18689 1.21418 1.19155 0.92484 0.92099 0.91665 0.93180 0.92002 0.93532 0.90942 0.83850 0.91008 0.89135 0.79341 0.80717 0.92772 0.90061 0.91557 0.98535 0.99880 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.12 -2.77 6.19 30.60 0.19 -2.58 16 3 C 0.06 1.49 5.69 86.30 0.49 1.98 16 4 N -0.70 -20.77 6.49 -517.93 -3.36 -24.13 16 5 C 0.15 4.47 5.82 85.56 0.50 4.97 16 6 C 0.19 6.71 7.41 138.13 1.02 7.73 16 7 N -0.52 -19.04 11.25 -188.13 -2.12 -21.16 16 8 C -0.05 -1.66 11.87 83.52 0.99 -0.67 16 9 C -0.06 -2.05 10.70 83.09 0.89 -1.16 16 10 N -0.43 -16.32 2.61 -491.90 -1.28 -17.60 16 11 C 0.14 5.55 2.94 44.99 0.13 5.68 16 12 H 0.09 3.69 6.68 -2.38 -0.02 3.67 16 13 C -0.14 -4.68 9.07 71.98 0.65 -4.02 16 14 C 0.04 2.01 4.45 29.85 0.13 2.15 16 15 C -0.53 -28.19 8.41 25.60 0.22 -27.97 16 16 H 0.07 3.58 7.05 -2.92 -0.02 3.55 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 19 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.34 10.31 8.72 -89.70 -0.78 9.52 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.49 7.09 -2.38 -0.02 2.47 16 33 H 0.19 5.15 8.06 -2.91 -0.02 5.12 16 34 H 0.18 5.81 8.06 -2.91 -0.02 5.79 16 35 H 0.05 1.83 7.96 -2.39 -0.02 1.81 16 36 H 0.08 2.79 6.95 -2.38 -0.02 2.78 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -64.47 330.78 2.16 -62.31 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.22 Total: 26.55 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 6.39 Total: -15.03 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -6.48 Total: -118.42 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.47 2.16 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695879762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.995 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds