Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 N 1.46901 * 109.47040 * 119.99750 * 2 1 3 5 5 C 1.46896 * 111.00178 * 85.00218 * 4 2 1 6 6 C 1.50702 * 109.47320 * 180.02562 * 5 4 2 7 7 C 1.34670 * 125.99226 * 95.00048 * 6 5 4 8 8 N 1.36879 * 106.81946 * 179.97438 * 7 6 5 9 9 C 1.46496 * 126.39676 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.47241 * 0.02562 * 9 8 7 11 11 C 1.53001 * 109.47017 * 119.99979 * 9 8 7 12 12 C 1.52997 * 109.47484 * 240.00284 * 9 8 7 13 13 C 1.50701 * 109.47212 * 175.00064 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.35043 * 107.20336 * 0.26430 * 8 7 6 22 22 N 1.30503 * 108.70144 * 359.55784 * 21 8 7 23 23 H 1.09000 * 109.47628 * 300.00444 * 1 2 3 24 24 H 1.08999 * 109.47229 * 60.00135 * 1 2 3 25 25 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47628 * 239.99555 * 2 1 3 27 27 H 1.09000 * 109.47257 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47116 * 299.99379 * 3 2 1 29 29 H 1.08997 * 109.47592 * 59.99662 * 3 2 1 30 30 H 1.00895 * 111.00254 * 321.04741 * 4 2 1 31 31 H 1.09002 * 109.47558 * 59.99802 * 5 4 2 32 32 H 1.08999 * 109.46998 * 300.00172 * 5 4 2 33 33 H 1.08002 * 126.58729 * 359.96055 * 7 6 5 34 34 H 1.08996 * 109.47271 * 300.00777 * 11 9 8 35 35 H 1.09008 * 109.46731 * 60.00158 * 11 9 8 36 36 H 1.08998 * 109.47430 * 180.02562 * 11 9 8 37 37 H 1.09002 * 109.47153 * 55.00066 * 12 9 8 38 38 H 1.09001 * 109.46832 * 295.00256 * 12 9 8 39 39 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 40 40 H 1.08003 * 125.64532 * 179.72019 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 -2.1437 0.9808 6 6 2.5873 -2.8186 2.2301 7 6 1.8258 -3.3557 3.2023 8 7 2.6824 -3.8599 4.1434 9 6 2.3068 -4.5396 5.3855 10 1 1.2203 -4.5900 5.4580 11 6 2.8836 -5.9568 5.3859 12 6 2.8626 -3.7625 6.5805 13 6 2.3742 -4.3914 7.8599 14 1 1.7319 -5.2590 7.8243 15 6 2.7481 -3.8599 9.0760 16 7 3.5306 -2.8038 9.1193 17 14 2.1432 -4.6399 10.6618 18 1 3.1075 -5.6805 11.1008 19 1 2.0270 -3.5976 11.7133 20 1 0.8144 -5.2617 10.4323 21 6 3.9384 -3.6078 3.7160 22 7 3.8738 -2.9901 2.5683 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.4495 -0.4721 2.0023 31 1 2.7588 -2.3576 0.1532 32 1 1.0871 -2.5186 0.7426 33 1 0.7466 -3.3832 3.2336 34 1 2.4877 -6.5104 4.5346 35 1 3.9701 -5.9068 5.3132 36 1 2.6038 -6.4627 6.3099 37 1 2.5224 -2.7281 6.5312 38 1 3.9520 -3.7882 6.5557 39 1 3.7933 -2.4296 9.9748 40 1 4.8460 -3.8757 4.2366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695883953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = 38.983463 kcal Electronic energy + Delta-G solvation = -18150.731640 eV Core-core repulsion = 15386.693354 eV Total energy + Delta-G solvation = -2764.038287 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.56213 -37.36630 -35.61677 -32.84157 -31.93215 -30.20143 -28.53052 -27.21070 -27.19501 -24.68926 -23.78746 -21.88182 -20.85045 -20.04202 -19.04541 -16.83741 -15.97044 -15.54746 -15.18815 -14.77510 -14.45853 -14.29780 -13.76837 -13.44804 -13.36924 -13.21399 -12.63103 -12.36394 -12.32791 -12.13048 -12.02299 -11.74759 -11.36144 -11.25195 -11.07652 -11.04738 -10.88752 -10.64317 -10.34214 -9.94440 -9.48229 -9.29081 -8.80915 -8.54181 -8.31502 -7.87625 -6.17826 -4.23354 2.59908 3.21474 3.28364 3.30158 3.47300 3.52208 4.32082 4.45386 4.81300 4.95084 5.02987 5.17970 5.22135 5.31138 5.42609 5.47110 5.54601 5.59508 5.71717 5.72405 5.77468 5.79575 5.91047 5.91795 6.05767 6.20843 6.24660 6.28141 6.50067 6.62024 6.93290 7.08753 7.26154 7.38725 7.47083 7.49610 7.70578 7.86357 8.13815 8.65108 8.81271 9.41980 10.93166 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.004060 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.823648 B = 6895.205337 C = 7293.251371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.078 3.922 3 C -0.139 4.139 4 N -0.678 5.678 5 C 0.153 3.847 6 C -0.013 4.013 7 C -0.053 4.053 8 N -0.436 5.436 9 C 0.126 3.874 10 H 0.087 0.913 11 C -0.146 4.146 12 C 0.021 3.979 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.189 3.811 22 N -0.490 5.490 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.162 0.838 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.023 0.977 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 1.133 -14.552 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.032 4.032 3 C -0.197 4.197 4 N -0.309 5.309 5 C 0.023 3.977 6 C -0.144 4.144 7 C -0.190 4.190 8 N -0.115 5.115 9 C 0.025 3.975 10 H 0.105 0.895 11 C -0.204 4.204 12 C -0.016 4.016 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.094 4.094 22 N -0.208 5.208 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.179 0.821 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.925 1.518 -14.893 15.477 hybrid contribution -1.966 -0.834 1.646 2.696 sum -5.891 0.685 -13.248 14.515 Atomic orbital electron populations 1.22539 0.97668 1.01774 1.02265 1.21555 0.92210 0.95696 0.93753 1.21760 1.01929 0.94972 1.01049 1.60552 1.57486 1.07567 1.05303 1.19967 0.97877 0.86126 0.93704 1.20267 0.89814 1.06020 0.98278 1.22382 0.96750 1.07196 0.92696 1.46023 1.06810 1.41171 1.17544 1.21968 1.00567 0.92977 0.81989 0.89507 1.22034 1.01224 0.95032 1.02098 1.19436 0.97033 0.95390 0.89784 1.21001 1.31354 1.13981 0.90199 0.92182 1.24999 0.94891 0.94834 0.99364 1.69965 1.34702 1.21913 1.25989 0.86533 0.79222 0.79007 0.82910 1.20481 1.21087 1.19783 1.24748 0.89047 1.01984 0.93644 1.70115 1.20501 1.17631 1.12567 0.92410 0.92286 0.92798 0.90665 0.91930 0.92857 0.92782 0.83973 0.90374 0.94698 0.82081 0.94005 0.92412 0.89688 0.95838 0.95590 0.92648 0.78593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.16 37.15 0.34 -1.28 16 2 C 0.08 0.81 3.20 -67.72 -0.22 0.59 16 3 C -0.14 -1.37 9.52 37.16 0.35 -1.02 16 4 N -0.68 -8.91 6.24 -108.00 -0.67 -9.58 16 5 C 0.15 2.08 6.02 -4.98 -0.03 2.05 16 6 C -0.01 -0.22 6.60 -82.85 -0.55 -0.77 16 7 C -0.05 -0.89 11.45 -16.56 -0.19 -1.08 16 8 N -0.44 -7.97 2.62 -111.46 -0.29 -8.26 16 9 C 0.13 2.40 3.00 -67.93 -0.20 2.20 16 10 H 0.09 1.60 8.08 -51.92 -0.42 1.18 16 11 C -0.15 -2.47 9.06 37.16 0.34 -2.13 16 12 C 0.02 0.51 4.44 -27.88 -0.12 0.38 16 13 C -0.53 -13.62 8.41 -34.44 -0.29 -13.91 16 14 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 17 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.19 3.53 11.65 -90.37 -1.05 2.48 16 22 N -0.49 -9.42 11.25 -10.87 -0.12 -9.54 16 23 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.47 7.45 -51.93 -0.39 0.09 16 26 H 0.08 0.76 7.80 -51.93 -0.40 0.36 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.34 4.52 8.46 -39.29 -0.33 4.19 16 31 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 32 H 0.03 0.41 7.44 -51.93 -0.39 0.02 16 33 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.96 7.95 -51.92 -0.41 0.55 16 36 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 40 H 0.20 3.33 8.06 -52.48 -0.42 2.91 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -29.40 330.95 -8.96 -38.36 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.85 Total: 4.29 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.72 Total: -10.91 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.35 Total: -52.20 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.40 -8.96 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695883953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.343 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds