Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 N 1.46901 * 109.47040 * 119.99750 * 2 1 3 5 5 C 1.46896 * 111.00178 * 85.00218 * 4 2 1 6 6 C 1.50702 * 109.47320 * 180.02562 * 5 4 2 7 7 C 1.34670 * 125.99226 * 95.00048 * 6 5 4 8 8 N 1.36879 * 106.81946 * 179.97438 * 7 6 5 9 9 C 1.46496 * 126.39676 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.47241 * 0.02562 * 9 8 7 11 11 C 1.53001 * 109.47017 * 119.99979 * 9 8 7 12 12 C 1.52997 * 109.47484 * 240.00284 * 9 8 7 13 13 C 1.50701 * 109.47212 * 175.00064 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.35043 * 107.20336 * 0.26430 * 8 7 6 22 22 N 1.30503 * 108.70144 * 359.55784 * 21 8 7 23 23 H 1.09000 * 109.47628 * 300.00444 * 1 2 3 24 24 H 1.08999 * 109.47229 * 60.00135 * 1 2 3 25 25 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47628 * 239.99555 * 2 1 3 27 27 H 1.09000 * 109.47257 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47116 * 299.99379 * 3 2 1 29 29 H 1.08997 * 109.47592 * 59.99662 * 3 2 1 30 30 H 1.00895 * 111.00254 * 321.04741 * 4 2 1 31 31 H 1.09002 * 109.47558 * 59.99802 * 5 4 2 32 32 H 1.08999 * 109.46998 * 300.00172 * 5 4 2 33 33 H 1.08002 * 126.58729 * 359.96055 * 7 6 5 34 34 H 1.08996 * 109.47271 * 300.00777 * 11 9 8 35 35 H 1.09008 * 109.46731 * 60.00158 * 11 9 8 36 36 H 1.08998 * 109.47430 * 180.02562 * 11 9 8 37 37 H 1.09002 * 109.47153 * 55.00066 * 12 9 8 38 38 H 1.09001 * 109.46832 * 295.00256 * 12 9 8 39 39 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 40 40 H 1.08003 * 125.64532 * 179.72019 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 -2.1437 0.9808 6 6 2.5873 -2.8186 2.2301 7 6 1.8258 -3.3557 3.2023 8 7 2.6824 -3.8599 4.1434 9 6 2.3068 -4.5396 5.3855 10 1 1.2203 -4.5900 5.4580 11 6 2.8836 -5.9568 5.3859 12 6 2.8626 -3.7625 6.5805 13 6 2.3742 -4.3914 7.8599 14 1 1.7319 -5.2590 7.8243 15 6 2.7481 -3.8599 9.0760 16 7 3.5306 -2.8038 9.1193 17 14 2.1432 -4.6399 10.6618 18 1 3.1075 -5.6805 11.1008 19 1 2.0270 -3.5976 11.7133 20 1 0.8144 -5.2617 10.4323 21 6 3.9384 -3.6078 3.7160 22 7 3.8738 -2.9901 2.5683 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.4495 -0.4721 2.0023 31 1 2.7588 -2.3576 0.1532 32 1 1.0871 -2.5186 0.7426 33 1 0.7466 -3.3832 3.2336 34 1 2.4877 -6.5104 4.5346 35 1 3.9701 -5.9068 5.3132 36 1 2.6038 -6.4627 6.3099 37 1 2.5224 -2.7281 6.5312 38 1 3.9520 -3.7882 6.5557 39 1 3.7933 -2.4296 9.9748 40 1 4.8460 -3.8757 4.2366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695883953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = 22.392988 kcal Electronic energy + Delta-G solvation = -18151.451057 eV Core-core repulsion = 15386.693354 eV Total energy + Delta-G solvation = -2764.757704 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.95628 -38.32623 -37.18009 -34.69131 -33.06722 -31.73954 -29.78009 -28.92830 -27.94204 -26.05199 -25.34970 -23.51460 -21.70276 -21.42605 -20.44644 -18.70108 -17.54708 -16.68625 -16.47512 -16.23832 -15.73166 -15.63256 -15.11284 -14.63860 -14.54770 -14.39607 -14.31192 -13.77312 -13.52287 -13.17647 -13.15405 -12.95084 -12.84461 -12.77908 -12.38599 -12.31297 -12.09516 -12.07500 -11.70124 -11.65504 -11.38452 -10.77962 -10.61025 -10.32123 -9.36201 -9.13458 -8.23717 -6.35806 1.22991 1.42696 1.43016 1.53703 2.03755 2.15983 2.41614 3.11653 3.46190 3.70736 3.85019 4.05154 4.06689 4.22791 4.23624 4.36539 4.42077 4.42588 4.49921 4.69915 4.81344 4.85046 4.89156 4.96728 5.00467 5.04458 5.10655 5.23938 5.31365 5.32724 5.36805 5.45080 5.65449 5.71513 5.90505 6.06237 6.24637 6.39474 6.52833 6.79335 7.26194 7.34617 8.88395 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.004060 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.823648 B = 6895.205337 C = 7293.251371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 C -0.137 4.137 4 N -0.695 5.695 5 C 0.159 3.841 6 C -0.021 4.021 7 C -0.055 4.055 8 N -0.441 5.441 9 C 0.139 3.861 10 H 0.099 0.901 11 C -0.138 4.138 12 C 0.031 3.969 13 C -0.533 4.533 14 H 0.076 0.924 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.258 1.258 21 C 0.171 3.829 22 N -0.514 5.514 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.339 0.661 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.191 0.809 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.081 0.919 37 H -0.015 1.015 38 H 0.001 0.999 39 H 0.263 0.737 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 0.100 -15.263 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 C -0.195 4.195 4 N -0.327 5.327 5 C 0.029 3.971 6 C -0.151 4.151 7 C -0.191 4.191 8 N -0.121 5.121 9 C 0.037 3.963 10 H 0.117 0.883 11 C -0.196 4.196 12 C -0.007 4.007 13 C -0.571 4.571 14 H 0.094 0.906 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.182 1.182 21 C -0.112 4.112 22 N -0.233 5.233 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.208 0.792 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.003 0.997 38 H 0.019 0.981 39 H 0.072 0.928 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.771 0.476 -15.634 16.672 hybrid contribution -1.373 -0.445 1.791 2.300 sum -7.145 0.031 -13.843 15.578 Atomic orbital electron populations 1.22452 0.96118 1.02099 1.02859 1.21620 0.93438 0.95492 0.92650 1.21749 1.00931 0.94986 1.01821 1.60525 1.58303 1.07467 1.06398 1.19969 0.98830 0.86369 0.91888 1.20833 0.89038 1.05772 0.99444 1.22908 0.97989 1.06232 0.91955 1.45985 1.07015 1.41574 1.17530 1.21692 1.00900 0.93276 0.80449 0.88339 1.21950 1.01049 0.93588 1.02985 1.19223 0.95471 0.93957 0.92039 1.21454 1.30772 1.14063 0.90835 0.90626 1.25947 0.95070 0.95278 1.03229 1.70115 1.36546 1.23804 1.26759 0.85433 0.79293 0.77960 0.78298 1.19777 1.21465 1.18215 1.24937 0.89613 1.02644 0.93983 1.70119 1.22084 1.18116 1.12967 0.92673 0.90817 0.92591 0.90323 0.93459 0.90796 0.93286 0.84256 0.90818 0.92238 0.79178 0.91526 0.92730 0.89985 0.99704 0.98092 0.92785 0.78183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.16 71.98 0.66 -2.04 16 2 C 0.08 1.48 3.20 44.91 0.14 1.63 16 3 C -0.14 -2.54 9.52 71.98 0.69 -1.86 16 4 N -0.70 -17.58 6.24 -495.60 -3.09 -20.67 16 5 C 0.16 4.09 6.02 85.56 0.52 4.61 16 6 C -0.02 -0.68 6.60 41.39 0.27 -0.41 16 7 C -0.06 -1.76 11.45 83.09 0.95 -0.81 16 8 N -0.44 -15.86 2.62 -506.54 -1.33 -17.18 16 9 C 0.14 5.15 3.00 44.99 0.14 5.28 16 10 H 0.10 3.44 8.08 -2.38 -0.02 3.42 16 11 C -0.14 -4.43 9.06 71.98 0.65 -3.78 16 12 C 0.03 1.50 4.44 29.85 0.13 1.64 16 13 C -0.53 -27.44 8.41 25.60 0.22 -27.22 16 14 H 0.08 3.59 7.06 -2.91 -0.02 3.56 16 15 C 0.00 0.18 5.46 84.66 0.46 0.64 16 16 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 17 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 21 C 0.17 6.45 11.65 180.26 2.10 8.55 16 22 N -0.51 -19.78 11.25 -188.31 -2.12 -21.90 16 23 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.84 7.45 -2.39 -0.02 0.82 16 26 H 0.08 1.46 7.80 -2.39 -0.02 1.44 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.34 8.70 8.46 -89.70 -0.76 7.94 16 31 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 32 H 0.06 1.23 7.44 -2.39 -0.02 1.22 16 33 H 0.19 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.77 7.95 -2.38 -0.02 1.75 16 36 H 0.08 2.68 6.95 -2.39 -0.02 2.67 16 37 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.00 0.04 8.08 -2.39 -0.02 0.02 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.20 7.06 8.06 -2.91 -0.02 7.04 16 Total: -1.00 -63.52 330.95 2.94 -60.58 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.24 Total: 23.83 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 6.92 Total: -13.77 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -6.25 Total: -114.37 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -63.52 2.94 -60.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695883953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.973 kcal (2) G-P(sol) polarization free energy of solvation -63.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds