Wall clock time and date at job start Mon Mar 30 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47287 * 2 1 4 4 H 1.09001 * 109.46414 * 304.99662 * 3 2 1 5 5 N 1.46897 * 109.47532 * 64.99458 * 3 2 1 6 6 C 1.53000 * 109.47096 * 184.99894 * 3 2 1 7 7 C 1.50704 * 109.46945 * 174.99378 * 6 3 2 8 8 N 1.30500 * 125.64894 * 90.02092 * 7 6 3 9 9 C 1.34127 * 109.25894 * 179.97438 * 8 7 6 10 10 C 1.34665 * 108.01668 * 0.26753 * 9 8 7 11 11 N 1.35045 * 125.65522 * 270.00216 * 7 6 3 12 12 C 1.46504 * 126.39317 * 0.05221 * 11 7 6 13 13 H 1.09004 * 109.47129 * 0.02562 * 12 11 7 14 14 C 1.52995 * 109.46805 * 240.00214 * 12 11 7 15 15 C 1.52996 * 109.46997 * 120.00168 * 12 11 7 16 16 C 1.50699 * 109.47201 * 184.99938 * 15 12 11 17 17 H 1.08006 * 119.99766 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00403 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47500 * 89.99666 * 20 18 16 22 22 H 1.48506 * 109.47206 * 210.00118 * 20 18 16 23 23 H 1.48506 * 109.47202 * 329.99870 * 20 18 16 24 24 H 1.09000 * 109.47055 * 60.01021 * 1 2 3 25 25 H 1.09006 * 109.47452 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47739 * 300.00483 * 1 2 3 27 27 H 1.09003 * 109.47433 * 239.99285 * 2 1 3 28 28 H 1.09008 * 109.46676 * 119.99523 * 2 1 3 29 29 H 1.00902 * 111.00001 * 60.00067 * 5 3 2 30 30 H 1.00894 * 111.00149 * 183.95723 * 5 3 2 31 31 H 1.08997 * 109.47096 * 54.99760 * 6 3 2 32 32 H 1.08994 * 109.47273 * 294.99056 * 6 3 2 33 33 H 1.08002 * 125.98809 * 179.97438 * 9 8 7 34 34 H 1.08002 * 126.58770 * 179.69323 * 10 9 8 35 35 H 1.08996 * 109.47561 * 299.99711 * 14 12 11 36 36 H 1.09000 * 109.47204 * 60.00437 * 14 12 11 37 37 H 1.09003 * 109.46943 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.47325 * 304.99874 * 15 12 11 39 39 H 1.09001 * 109.47159 * 64.99605 * 15 12 11 40 40 H 0.97004 * 120.00363 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6513 2.0994 1.2551 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2494 8 7 4.3926 3.6411 0.7433 9 6 4.7822 4.8306 0.2611 10 6 4.6787 4.7901 -1.0810 11 7 4.2241 3.5406 -1.4057 12 6 3.9613 3.0345 -2.7552 13 1 3.6019 2.0072 -2.6945 14 6 5.2521 3.0761 -3.5757 15 6 2.9002 3.9066 -3.4292 16 6 2.5407 3.3156 -4.7681 17 1 3.0208 2.4085 -5.1044 18 6 1.5990 3.9329 -5.5637 19 7 1.2856 3.4175 -6.7323 20 14 0.7692 5.5023 -4.9824 21 1 1.5583 6.6762 -5.4343 22 1 -0.6006 5.5779 -5.5510 23 1 0.6901 5.5004 -3.4994 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.0421 1.6181 2.0512 30 1 1.9203 3.0718 1.2527 31 1 3.8570 0.8799 -1.0112 32 1 4.0029 0.9837 0.7597 33 1 5.1156 5.6745 0.8468 34 1 4.9114 5.5895 -1.7690 35 1 5.6111 4.1034 -3.6364 36 1 6.0080 2.4548 -3.0955 37 1 5.0567 2.6992 -4.5796 38 1 2.0111 3.9485 -2.8001 39 1 3.2933 4.9134 -3.5702 40 1 0.6228 3.8516 -7.2920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695884573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:17 Heat of formation + Delta-G solvation = 32.131331 kcal Electronic energy + Delta-G solvation = -19173.486831 eV Core-core repulsion = 16409.151413 eV Total energy + Delta-G solvation = -2764.335417 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.82766 -36.98840 -35.80891 -32.69340 -31.55015 -30.41651 -30.15074 -27.76738 -27.22894 -24.01818 -23.53360 -21.69636 -20.50411 -20.19381 -18.82358 -17.32491 -16.16337 -16.05848 -15.17473 -14.67735 -14.41824 -14.08795 -13.83046 -13.64148 -13.24103 -13.08451 -13.04965 -12.75038 -12.31621 -12.18502 -11.77651 -11.63607 -11.35099 -11.19307 -11.06717 -10.75288 -10.60377 -10.53108 -10.35160 -10.01897 -9.67517 -9.42409 -9.03182 -8.72835 -8.62892 -7.95562 -6.23410 -4.24847 2.44770 3.18735 3.26346 3.28137 3.31858 3.42325 4.29036 4.54750 4.73713 5.04783 5.07442 5.09325 5.20861 5.32195 5.35525 5.47448 5.56216 5.66303 5.73120 5.79193 5.80088 5.95745 6.01594 6.06599 6.15260 6.18651 6.32209 6.40100 6.51270 6.57096 6.72353 6.88203 7.01295 7.13103 7.35743 7.45299 7.65017 7.69236 8.26787 8.42529 8.76510 9.37040 10.88662 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.007932 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.483098 B = 3529.222162 C = 4389.602218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.094 3.906 4 H 0.084 0.916 5 N -0.835 5.835 6 C -0.069 4.069 7 C 0.194 3.806 8 N -0.501 5.501 9 C -0.045 4.045 10 C -0.045 4.045 11 N -0.434 5.434 12 C 0.134 3.866 13 H 0.096 0.904 14 C -0.147 4.147 15 C -0.013 4.013 16 C -0.525 4.525 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.894 5.894 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.335 0.665 30 H 0.346 0.654 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -2.871 11.775 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.019 4.019 4 H 0.102 0.898 5 N -0.364 5.364 6 C -0.110 4.110 7 C -0.068 4.068 8 N -0.221 5.221 9 C -0.194 4.194 10 C -0.181 4.181 11 N -0.114 5.114 12 C 0.033 3.967 13 H 0.114 0.886 14 C -0.205 4.205 15 C -0.051 4.051 16 C -0.563 4.563 17 H 0.096 0.904 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.190 1.190 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.160 0.840 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.291 -3.303 12.052 12.922 hybrid contribution 0.707 1.480 -0.723 1.792 sum 3.997 -1.823 11.329 12.151 Atomic orbital electron populations 1.21653 0.95085 1.00654 1.02765 1.21510 0.97033 0.94893 1.01612 1.21511 0.90459 0.95860 0.94066 0.89757 1.58998 1.66479 1.07531 1.03394 1.20905 0.98190 0.88157 1.03722 1.23007 1.05429 0.96958 0.81385 1.70121 1.18564 1.03035 1.30350 1.22117 1.08464 0.96884 0.91885 1.22615 1.08238 0.89515 0.97698 1.45908 1.46122 1.11016 1.08356 1.21741 0.97801 0.99920 0.77287 0.88625 1.22039 0.95062 1.01953 1.01451 1.19886 0.93186 0.95117 0.96862 1.20849 1.23743 1.12018 0.99728 0.90425 1.24926 0.96043 0.97221 0.94574 1.69880 1.32782 1.40051 1.10444 0.86844 0.79247 0.83955 0.79715 1.20148 1.21041 1.19025 0.92753 0.93585 0.91687 0.91611 0.92258 0.85329 0.83995 0.90058 0.89457 0.81994 0.81595 0.92564 0.93827 0.89161 0.95931 0.96312 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.80 37.15 0.36 -1.40 16 2 C -0.11 -1.33 5.58 -26.73 -0.15 -1.48 16 3 C 0.09 1.29 2.79 -67.71 -0.19 1.10 16 4 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 5 N -0.84 -11.20 8.65 -4.67 -0.04 -11.24 16 6 C -0.07 -0.93 5.01 -27.88 -0.14 -1.07 16 7 C 0.19 3.19 6.47 -155.41 -1.00 2.18 16 8 N -0.50 -8.44 10.80 -10.81 -0.12 -8.55 16 9 C -0.04 -0.71 11.87 -17.81 -0.21 -0.92 16 10 C -0.05 -0.74 10.70 -16.57 -0.18 -0.92 16 11 N -0.43 -7.47 2.61 -106.83 -0.28 -7.75 16 12 C 0.13 2.44 2.94 -67.93 -0.20 2.25 16 13 H 0.10 1.72 6.67 -51.93 -0.35 1.37 16 14 C -0.15 -2.47 9.06 37.16 0.34 -2.14 16 15 C -0.01 -0.28 3.52 -27.89 -0.10 -0.38 16 16 C -0.53 -13.64 8.96 -34.44 -0.31 -13.95 16 17 H 0.08 2.13 7.30 -52.48 -0.38 1.74 16 18 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 20 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.33 3.96 9.00 -39.29 -0.35 3.61 16 30 H 0.35 5.21 7.92 -39.29 -0.31 4.90 16 31 H 0.08 1.06 7.08 -51.93 -0.37 0.69 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.17 2.43 8.06 -52.49 -0.42 2.00 16 35 H 0.06 0.92 7.96 -51.93 -0.41 0.50 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 38 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 39 H 0.02 0.42 7.51 -51.93 -0.39 0.03 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -28.70 323.16 -8.01 -36.71 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.67 Total: 9.72 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.87 Total: -14.75 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.34 Total: -52.83 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.70 -8.01 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695884573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.843 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds