Wall clock time and date at job start Mon Mar 30 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47287 * 2 1 4 4 H 1.09001 * 109.46414 * 304.99662 * 3 2 1 5 5 N 1.46897 * 109.47532 * 64.99458 * 3 2 1 6 6 C 1.53000 * 109.47096 * 184.99894 * 3 2 1 7 7 C 1.50704 * 109.46945 * 174.99378 * 6 3 2 8 8 N 1.30500 * 125.64894 * 90.02092 * 7 6 3 9 9 C 1.34127 * 109.25894 * 179.97438 * 8 7 6 10 10 C 1.34665 * 108.01668 * 0.26753 * 9 8 7 11 11 N 1.35045 * 125.65522 * 270.00216 * 7 6 3 12 12 C 1.46504 * 126.39317 * 0.05221 * 11 7 6 13 13 H 1.09004 * 109.47129 * 0.02562 * 12 11 7 14 14 C 1.52995 * 109.46805 * 240.00214 * 12 11 7 15 15 C 1.52996 * 109.46997 * 120.00168 * 12 11 7 16 16 C 1.50699 * 109.47201 * 184.99938 * 15 12 11 17 17 H 1.08006 * 119.99766 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00403 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47500 * 89.99666 * 20 18 16 22 22 H 1.48506 * 109.47206 * 210.00118 * 20 18 16 23 23 H 1.48506 * 109.47202 * 329.99870 * 20 18 16 24 24 H 1.09000 * 109.47055 * 60.01021 * 1 2 3 25 25 H 1.09006 * 109.47452 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47739 * 300.00483 * 1 2 3 27 27 H 1.09003 * 109.47433 * 239.99285 * 2 1 3 28 28 H 1.09008 * 109.46676 * 119.99523 * 2 1 3 29 29 H 1.00902 * 111.00001 * 60.00067 * 5 3 2 30 30 H 1.00894 * 111.00149 * 183.95723 * 5 3 2 31 31 H 1.08997 * 109.47096 * 54.99760 * 6 3 2 32 32 H 1.08994 * 109.47273 * 294.99056 * 6 3 2 33 33 H 1.08002 * 125.98809 * 179.97438 * 9 8 7 34 34 H 1.08002 * 126.58770 * 179.69323 * 10 9 8 35 35 H 1.08996 * 109.47561 * 299.99711 * 14 12 11 36 36 H 1.09000 * 109.47204 * 60.00437 * 14 12 11 37 37 H 1.09003 * 109.46943 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.47325 * 304.99874 * 15 12 11 39 39 H 1.09001 * 109.47159 * 64.99605 * 15 12 11 40 40 H 0.97004 * 120.00363 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6513 2.0994 1.2551 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2494 8 7 4.3926 3.6411 0.7433 9 6 4.7822 4.8306 0.2611 10 6 4.6787 4.7901 -1.0810 11 7 4.2241 3.5406 -1.4057 12 6 3.9613 3.0345 -2.7552 13 1 3.6019 2.0072 -2.6945 14 6 5.2521 3.0761 -3.5757 15 6 2.9002 3.9066 -3.4292 16 6 2.5407 3.3156 -4.7681 17 1 3.0208 2.4085 -5.1044 18 6 1.5990 3.9329 -5.5637 19 7 1.2856 3.4175 -6.7323 20 14 0.7692 5.5023 -4.9824 21 1 1.5583 6.6762 -5.4343 22 1 -0.6006 5.5779 -5.5510 23 1 0.6901 5.5004 -3.4994 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.0421 1.6181 2.0512 30 1 1.9203 3.0718 1.2527 31 1 3.8570 0.8799 -1.0112 32 1 4.0029 0.9837 0.7597 33 1 5.1156 5.6745 0.8468 34 1 4.9114 5.5895 -1.7690 35 1 5.6111 4.1034 -3.6364 36 1 6.0080 2.4548 -3.0955 37 1 5.0567 2.6992 -4.5796 38 1 2.0111 3.9485 -2.8001 39 1 3.2933 4.9134 -3.5702 40 1 0.6228 3.8516 -7.2920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695884573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:17 Heat of formation + Delta-G solvation = 14.893963 kcal Electronic energy + Delta-G solvation = -19174.234299 eV Core-core repulsion = 16409.151413 eV Total energy + Delta-G solvation = -2765.082886 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.09859 -38.05809 -37.35799 -34.65768 -32.60270 -31.94511 -31.28717 -29.44739 -28.38980 -25.60340 -24.72388 -23.19512 -21.60812 -21.54235 -20.17344 -19.16142 -17.65050 -17.16771 -16.64479 -16.13429 -15.86935 -15.39646 -15.17412 -14.92995 -14.64680 -14.47919 -14.22352 -14.09537 -13.85928 -13.37984 -13.25607 -13.07340 -12.81258 -12.67767 -12.26654 -12.18880 -11.97824 -11.86952 -11.73132 -11.64189 -11.49373 -10.91925 -10.83288 -10.42295 -9.72792 -9.16913 -8.35137 -6.39305 1.17469 1.28288 1.33115 1.41390 1.93768 2.18782 2.28350 2.99947 3.41132 3.66015 3.73910 3.91536 3.98293 4.10698 4.24723 4.26137 4.28916 4.43275 4.56710 4.67016 4.71346 4.74377 4.81685 4.86808 4.98205 5.05204 5.08228 5.12221 5.17696 5.21474 5.38480 5.48309 5.52360 5.56869 5.89075 6.15631 6.25132 6.34456 6.62620 6.66893 7.16703 7.25322 8.79918 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.007932 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.483098 B = 3529.222162 C = 4389.602218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.101 3.899 4 H 0.049 0.951 5 N -0.834 5.834 6 C -0.066 4.066 7 C 0.189 3.811 8 N -0.512 5.512 9 C -0.047 4.047 10 C -0.061 4.061 11 N -0.442 5.442 12 C 0.144 3.856 13 H 0.095 0.905 14 C -0.140 4.140 15 C -0.004 4.004 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.020 3.980 19 N -0.938 5.938 20 Si 0.934 3.066 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.261 1.261 24 H 0.033 0.967 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.346 0.654 30 H 0.337 0.663 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.188 0.812 34 H 0.181 0.819 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.008 0.992 39 H 0.022 0.978 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 -2.612 13.507 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.013 4.013 4 H 0.067 0.933 5 N -0.363 5.363 6 C -0.107 4.107 7 C -0.073 4.073 8 N -0.232 5.232 9 C -0.195 4.195 10 C -0.195 4.195 11 N -0.123 5.123 12 C 0.042 3.958 13 H 0.113 0.887 14 C -0.197 4.197 15 C -0.042 4.042 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.179 4.179 19 N -0.578 5.578 20 Si 0.759 3.241 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.186 1.186 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.205 0.795 34 H 0.198 0.802 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.027 0.973 39 H 0.040 0.960 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.994 -3.041 13.812 14.696 hybrid contribution 0.518 1.356 -1.216 1.893 sum 4.512 -1.686 12.595 13.485 Atomic orbital electron populations 1.21633 0.95497 1.01366 1.01506 1.21503 0.96602 0.93707 1.02850 1.21384 0.90415 0.96527 0.92943 0.93286 1.58970 1.66624 1.07002 1.03734 1.20986 0.97922 0.86974 1.04769 1.23522 1.04909 0.97871 0.81012 1.70162 1.19022 1.03577 1.30453 1.22601 1.07610 0.97259 0.92029 1.22988 1.08542 0.89577 0.98433 1.45845 1.46936 1.11676 1.07889 1.21426 0.97350 0.98960 0.78075 0.88667 1.21943 0.94787 1.02659 1.00354 1.19710 0.93910 0.95721 0.94844 1.21111 1.22663 1.10946 1.01100 0.92816 1.25713 0.97055 1.00376 0.94718 1.70002 1.34056 1.41886 1.11885 0.85906 0.78301 0.80615 0.79310 1.18989 1.20979 1.18570 0.94801 0.91911 0.92103 0.91196 0.90118 0.84090 0.85048 0.89524 0.87735 0.79463 0.80224 0.92029 0.91745 0.90855 0.97331 0.95974 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.80 71.98 0.71 -2.63 16 2 C -0.11 -2.38 5.58 30.59 0.17 -2.21 16 3 C 0.10 2.65 2.79 44.92 0.13 2.78 16 4 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 5 N -0.83 -21.30 8.65 -168.68 -1.46 -22.76 16 6 C -0.07 -1.67 5.01 29.85 0.15 -1.52 16 7 C 0.19 5.88 6.47 138.13 0.89 6.77 16 8 N -0.51 -16.21 10.80 -188.13 -2.03 -18.24 16 9 C -0.05 -1.38 11.87 83.52 0.99 -0.39 16 10 C -0.06 -1.88 10.70 83.09 0.89 -0.99 16 11 N -0.44 -14.58 2.61 -491.91 -1.28 -15.86 16 12 C 0.14 5.14 2.94 44.99 0.13 5.27 16 13 H 0.10 3.39 6.67 -2.38 -0.02 3.37 16 14 C -0.14 -4.52 9.06 71.98 0.65 -3.87 16 15 C 0.00 -0.17 3.52 29.85 0.11 -0.06 16 16 C -0.52 -27.32 8.96 25.60 0.23 -27.09 16 17 H 0.05 3.02 7.30 -2.91 -0.02 3.00 16 18 C 0.02 1.11 5.47 84.65 0.46 1.57 16 19 N -0.94 -55.73 13.96 21.45 0.30 -55.43 16 20 Si 0.93 43.16 27.47 68.60 1.88 45.05 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.26 -11.79 6.54 99.48 0.65 -11.14 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.06 1.46 7.75 -2.39 -0.02 1.44 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.35 7.48 9.00 -89.69 -0.81 6.67 16 30 H 0.34 9.80 7.92 -89.70 -0.71 9.09 16 31 H 0.09 2.11 7.08 -2.39 -0.02 2.09 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.19 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.18 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.06 1.91 7.96 -2.39 -0.02 1.89 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 2.62 6.95 -2.39 -0.02 2.61 16 38 H 0.01 0.39 7.20 -2.39 -0.02 0.38 16 39 H 0.02 0.95 7.51 -2.39 -0.02 0.94 16 40 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -60.94 323.16 2.37 -58.58 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.55 Total: 31.03 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 5.51 Total: -22.37 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.47 Total: -112.29 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -60.94 2.37 -58.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695884573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.470 kcal (2) G-P(sol) polarization free energy of solvation -60.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds