Wall clock time and date at job start Mon Mar 30 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 H 1.09001 * 109.47070 * 55.00210 * 3 2 1 5 5 N 1.46903 * 109.46878 * 294.99735 * 3 2 1 6 6 C 1.52997 * 109.46740 * 175.00091 * 3 2 1 7 7 C 1.50706 * 109.47001 * 185.00277 * 6 3 2 8 8 N 1.30501 * 125.64747 * 270.17539 * 7 6 3 9 9 C 1.34128 * 109.25501 * 180.29081 * 8 7 6 10 10 C 1.34661 * 108.02021 * 359.72347 * 9 8 7 11 11 N 1.35040 * 125.65454 * 89.99479 * 7 6 3 12 12 C 1.46498 * 126.39210 * 359.97438 * 11 7 6 13 13 H 1.08998 * 109.47646 * 359.71245 * 12 11 7 14 14 C 1.53004 * 109.46734 * 239.71013 * 12 11 7 15 15 C 1.53004 * 109.47304 * 119.71536 * 12 11 7 16 16 C 1.50701 * 109.47211 * 184.99946 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 H 1.08997 * 109.47391 * 300.00114 * 1 2 3 25 25 H 1.09002 * 109.47233 * 60.00343 * 1 2 3 26 26 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47105 * 240.00264 * 2 1 3 28 28 H 1.08994 * 109.47331 * 120.00312 * 2 1 3 29 29 H 1.00900 * 111.00100 * 299.99981 * 5 3 2 30 30 H 1.00896 * 111.00089 * 63.96307 * 5 3 2 31 31 H 1.09005 * 109.47610 * 65.00256 * 6 3 2 32 32 H 1.08999 * 109.47451 * 304.99559 * 6 3 2 33 33 H 1.07998 * 125.98830 * 179.72493 * 9 8 7 34 34 H 1.08003 * 126.59134 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.46939 * 180.02562 * 14 12 11 36 36 H 1.08997 * 109.47262 * 299.99923 * 14 12 11 37 37 H 1.08990 * 109.47425 * 60.00086 * 14 12 11 38 38 H 1.09000 * 109.47211 * 64.98973 * 15 12 11 39 39 H 1.09007 * 109.46376 * 304.99515 * 15 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6514 2.0992 -1.2553 6 6 3.5648 1.4443 0.1257 7 6 4.0570 2.8633 0.2493 8 7 4.3892 3.6423 -0.7436 9 6 4.7856 4.8294 -0.2611 10 6 4.6897 4.7863 1.0815 11 7 4.2240 3.5407 1.4056 12 6 3.9617 3.0345 2.7551 13 1 3.5983 2.0087 2.6942 14 6 2.9055 3.9106 3.4319 15 6 5.2541 3.0699 3.5733 16 6 5.0140 2.4365 4.9194 17 1 4.0371 2.0480 5.1668 18 6 6.0397 2.3587 5.8374 19 7 7.2291 2.8321 5.5363 20 14 5.7399 1.5806 7.5090 21 1 6.0272 0.1254 7.4364 22 1 6.6311 2.2113 8.5156 23 1 4.3233 1.7863 7.9040 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0422 1.6179 -2.0513 30 1 0.6477 2.1684 -1.3315 31 1 4.0030 0.9836 -0.7597 32 1 3.8570 0.8801 1.0113 33 1 5.1225 5.6720 -0.8466 34 1 4.9331 5.5819 1.7701 35 1 2.7107 3.5343 4.4361 36 1 3.2690 4.9363 3.4928 37 1 1.9849 3.8854 2.8491 38 1 5.5698 4.1043 3.7094 39 1 6.0330 2.5188 3.0461 40 1 7.9506 2.7777 6.1823 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695884578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:19 Heat of formation + Delta-G solvation = 31.998764 kcal Electronic energy + Delta-G solvation = -18935.553753 eV Core-core repulsion = 16171.212587 eV Total energy + Delta-G solvation = -2764.341166 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.44484 -37.19963 -35.51982 -32.65235 -31.48680 -30.28858 -29.92655 -27.21829 -27.13525 -24.02216 -23.68698 -21.63571 -20.62908 -20.00919 -18.58431 -16.80981 -16.10682 -15.87739 -15.07788 -14.69542 -14.53469 -14.19286 -13.95601 -13.39386 -13.28092 -13.04265 -12.83030 -12.43429 -12.08119 -12.00256 -11.67906 -11.48377 -11.41521 -11.10167 -11.08534 -10.95063 -10.87126 -10.63039 -10.23573 -9.93945 -9.44330 -9.14990 -8.65734 -8.52239 -8.51182 -7.64749 -6.16034 -4.21205 2.80569 3.22070 3.29062 3.30727 3.57507 3.81879 4.33213 4.58706 4.68726 4.94356 4.97299 5.12652 5.19797 5.37344 5.42626 5.52495 5.56442 5.66140 5.76050 5.80561 5.84914 5.90987 6.00032 6.04525 6.08584 6.17721 6.33068 6.45323 6.58817 6.68002 7.09621 7.26451 7.40556 7.44565 7.53316 7.56901 7.76219 7.98292 8.17542 8.82783 8.84350 9.43879 10.95053 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.006138 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.668983 B = 4560.793232 C = 5490.799511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.162 4.162 3 C 0.099 3.901 4 H 0.078 0.922 5 N -0.828 5.828 6 C -0.027 4.027 7 C 0.210 3.790 8 N -0.484 5.484 9 C -0.050 4.050 10 C -0.046 4.046 11 N -0.436 5.436 12 C 0.127 3.873 13 H 0.087 0.913 14 C -0.144 4.144 15 C 0.022 3.978 16 C -0.525 4.525 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.339 0.661 30 H 0.334 0.666 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 -2.880 -9.060 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C -0.014 4.014 4 H 0.096 0.904 5 N -0.358 5.358 6 C -0.066 4.066 7 C -0.053 4.053 8 N -0.202 5.202 9 C -0.199 4.199 10 C -0.181 4.181 11 N -0.116 5.116 12 C 0.025 3.975 13 H 0.105 0.895 14 C -0.202 4.202 15 C -0.016 4.016 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.175 0.825 34 H 0.180 0.820 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.376 -2.476 -9.374 14.201 hybrid contribution -0.369 -0.942 1.708 1.985 sum -10.745 -3.418 -7.666 13.635 Atomic orbital electron populations 1.21770 0.95804 1.01656 1.01745 1.22398 0.96299 0.98653 1.02780 1.21418 0.94368 0.91796 0.93792 0.90403 1.58754 1.15171 1.58374 1.03454 1.19978 0.94336 0.88941 1.03376 1.22624 1.05116 0.96430 0.81085 1.70093 1.17458 1.02488 1.30195 1.22058 1.08722 0.97275 0.91807 1.22503 1.08320 0.89772 0.97523 1.45814 1.46534 1.11242 1.08060 1.21877 0.99989 0.97417 0.78225 0.89520 1.22006 0.96707 1.00125 1.01376 1.19418 0.89769 0.98392 0.94008 1.21017 0.96927 1.39681 0.98719 0.92212 1.24995 0.95043 0.95307 0.98742 1.69965 1.01674 1.45429 1.35627 0.86552 0.78229 0.79440 0.83557 1.20533 1.21100 1.19753 0.92495 0.92998 0.92694 0.91872 0.91135 0.84801 0.85342 0.89514 0.89915 0.82480 0.81983 0.89934 0.92588 0.94112 0.95733 0.95986 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.68 37.16 0.36 -0.95 16 2 C -0.16 -1.58 5.58 -26.73 -0.15 -1.73 16 3 C 0.10 1.21 2.79 -67.71 -0.19 1.02 16 4 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 5 N -0.83 -9.81 8.90 -4.67 -0.04 -9.86 16 6 C -0.03 -0.39 5.00 -27.88 -0.14 -0.53 16 7 C 0.21 3.86 6.89 -155.41 -1.07 2.79 16 8 N -0.48 -9.39 11.25 -10.82 -0.12 -9.51 16 9 C -0.05 -0.91 11.87 -17.81 -0.21 -1.13 16 10 C -0.05 -0.86 10.70 -16.56 -0.18 -1.04 16 11 N -0.44 -8.37 2.61 -106.83 -0.28 -8.64 16 12 C 0.13 2.49 2.94 -67.93 -0.20 2.29 16 13 H 0.09 1.64 6.67 -51.93 -0.35 1.29 16 14 C -0.14 -2.56 9.06 37.16 0.34 -2.23 16 15 C 0.02 0.53 4.46 -27.88 -0.12 0.41 16 16 C -0.52 -13.71 8.41 -34.44 -0.29 -14.00 16 17 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 20 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.40 6.87 -51.93 -0.36 0.05 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.34 3.69 9.00 -39.29 -0.35 3.34 16 30 H 0.33 3.37 7.55 -39.29 -0.30 3.07 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.20 7.08 -51.93 -0.37 0.83 16 33 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.16 2.80 8.06 -52.48 -0.42 2.38 16 35 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 36 H 0.06 1.00 7.95 -51.93 -0.41 0.58 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.02 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -30.21 326.50 -8.40 -38.61 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.65 Total: 7.42 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.95 Total: -13.51 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.29 Total: -53.02 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.21 -8.40 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695884578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.611 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds