Wall clock time and date at job start Mon Mar 30 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 H 1.09001 * 109.47070 * 55.00210 * 3 2 1 5 5 N 1.46903 * 109.46878 * 294.99735 * 3 2 1 6 6 C 1.52997 * 109.46740 * 175.00091 * 3 2 1 7 7 C 1.50706 * 109.47001 * 185.00277 * 6 3 2 8 8 N 1.30501 * 125.64747 * 270.17539 * 7 6 3 9 9 C 1.34128 * 109.25501 * 180.29081 * 8 7 6 10 10 C 1.34661 * 108.02021 * 359.72347 * 9 8 7 11 11 N 1.35040 * 125.65454 * 89.99479 * 7 6 3 12 12 C 1.46498 * 126.39210 * 359.97438 * 11 7 6 13 13 H 1.08998 * 109.47646 * 359.71245 * 12 11 7 14 14 C 1.53004 * 109.46734 * 239.71013 * 12 11 7 15 15 C 1.53004 * 109.47304 * 119.71536 * 12 11 7 16 16 C 1.50701 * 109.47211 * 184.99946 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 H 1.08997 * 109.47391 * 300.00114 * 1 2 3 25 25 H 1.09002 * 109.47233 * 60.00343 * 1 2 3 26 26 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47105 * 240.00264 * 2 1 3 28 28 H 1.08994 * 109.47331 * 120.00312 * 2 1 3 29 29 H 1.00900 * 111.00100 * 299.99981 * 5 3 2 30 30 H 1.00896 * 111.00089 * 63.96307 * 5 3 2 31 31 H 1.09005 * 109.47610 * 65.00256 * 6 3 2 32 32 H 1.08999 * 109.47451 * 304.99559 * 6 3 2 33 33 H 1.07998 * 125.98830 * 179.72493 * 9 8 7 34 34 H 1.08003 * 126.59134 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.46939 * 180.02562 * 14 12 11 36 36 H 1.08997 * 109.47262 * 299.99923 * 14 12 11 37 37 H 1.08990 * 109.47425 * 60.00086 * 14 12 11 38 38 H 1.09000 * 109.47211 * 64.98973 * 15 12 11 39 39 H 1.09007 * 109.46376 * 304.99515 * 15 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6514 2.0992 -1.2553 6 6 3.5648 1.4443 0.1257 7 6 4.0570 2.8633 0.2493 8 7 4.3892 3.6423 -0.7436 9 6 4.7856 4.8294 -0.2611 10 6 4.6897 4.7863 1.0815 11 7 4.2240 3.5407 1.4056 12 6 3.9617 3.0345 2.7551 13 1 3.5983 2.0087 2.6942 14 6 2.9055 3.9106 3.4319 15 6 5.2541 3.0699 3.5733 16 6 5.0140 2.4365 4.9194 17 1 4.0371 2.0480 5.1668 18 6 6.0397 2.3587 5.8374 19 7 7.2291 2.8321 5.5363 20 14 5.7399 1.5806 7.5090 21 1 6.0272 0.1254 7.4364 22 1 6.6311 2.2113 8.5156 23 1 4.3233 1.7863 7.9040 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0422 1.6179 -2.0513 30 1 0.6477 2.1684 -1.3315 31 1 4.0030 0.9836 -0.7597 32 1 3.8570 0.8801 1.0113 33 1 5.1225 5.6720 -0.8466 34 1 4.9331 5.5819 1.7701 35 1 2.7107 3.5343 4.4361 36 1 3.2690 4.9363 3.4928 37 1 1.9849 3.8854 2.8491 38 1 5.5698 4.1043 3.7094 39 1 6.0330 2.5188 3.0461 40 1 7.9506 2.7777 6.1823 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695884578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:19 Heat of formation + Delta-G solvation = 13.760097 kcal Electronic energy + Delta-G solvation = -18936.344641 eV Core-core repulsion = 16171.212587 eV Total energy + Delta-G solvation = -2765.132054 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.90404 -38.14208 -37.21481 -34.61707 -32.51095 -31.60297 -31.25347 -28.96519 -28.43954 -25.78536 -24.74023 -23.25865 -21.59612 -21.48289 -20.05272 -18.67354 -17.56307 -17.08873 -16.65434 -16.11970 -15.69424 -15.36541 -15.21266 -14.85736 -14.59695 -14.31066 -14.18032 -13.99607 -13.73221 -13.20617 -13.04942 -12.90319 -12.75184 -12.57735 -12.37350 -12.28944 -12.01838 -11.96503 -11.73931 -11.67944 -11.39840 -10.70476 -10.61571 -10.22417 -9.42344 -9.08090 -8.23935 -6.36172 1.33994 1.42169 1.42495 1.53383 2.07925 2.38042 2.41693 3.11163 3.53661 3.68327 3.84783 3.98228 4.10161 4.18538 4.22554 4.23322 4.38954 4.44064 4.61735 4.69239 4.74908 4.80797 4.84690 4.95547 4.97127 5.05246 5.14408 5.20382 5.29027 5.34831 5.37206 5.38975 5.71314 5.71584 6.00556 6.10165 6.38498 6.52638 6.75564 6.78840 7.34094 7.37398 8.88336 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.006138 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.668983 B = 4560.793232 C = 5490.799511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.110 3.890 4 H 0.063 0.937 5 N -0.840 5.840 6 C -0.029 4.029 7 C 0.208 3.792 8 N -0.503 5.503 9 C -0.053 4.053 10 C -0.067 4.067 11 N -0.445 5.445 12 C 0.139 3.861 13 H 0.097 0.903 14 C -0.135 4.135 15 C 0.033 3.967 16 C -0.532 4.532 17 H 0.075 0.925 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.256 1.256 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.345 0.655 30 H 0.344 0.656 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.182 0.818 34 H 0.169 0.831 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.062 0.938 38 H -0.003 1.003 39 H -0.017 1.017 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -3.864 -8.986 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C -0.003 4.003 4 H 0.081 0.919 5 N -0.371 5.371 6 C -0.069 4.069 7 C -0.055 4.055 8 N -0.222 5.222 9 C -0.201 4.201 10 C -0.201 4.201 11 N -0.127 5.127 12 C 0.037 3.963 13 H 0.115 0.885 14 C -0.193 4.193 15 C -0.005 4.005 16 C -0.570 4.570 17 H 0.094 0.906 18 C -0.195 4.195 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.180 1.180 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.199 0.801 34 H 0.186 0.814 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.015 0.985 39 H 0.002 0.998 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.276 -3.454 -9.318 15.795 hybrid contribution 0.256 -0.607 1.599 1.729 sum -12.021 -4.061 -7.719 14.852 Atomic orbital electron populations 1.21754 0.94700 1.02366 1.01929 1.22309 0.97162 0.96757 1.03149 1.21234 0.92318 0.93269 0.93502 0.91898 1.58707 1.16163 1.58755 1.03488 1.20166 0.96244 0.86771 1.03683 1.23358 1.03988 0.97567 0.80564 1.70130 1.18383 1.03066 1.30630 1.22518 1.07930 0.97760 0.91928 1.22776 1.09102 0.90122 0.98119 1.45828 1.47250 1.11590 1.07982 1.21608 0.97858 0.98689 0.78167 0.88473 1.21910 0.96788 0.99247 1.01346 1.19197 0.91161 0.95828 0.94268 1.21444 0.97481 1.38955 0.99150 0.90647 1.25949 0.94719 0.95862 1.02946 1.70116 1.02812 1.47233 1.37115 0.85438 0.78755 0.78403 0.78432 1.19925 1.21325 1.18028 0.93003 0.92158 0.91723 0.90884 0.91401 0.84147 0.84147 0.88673 0.90061 0.80104 0.81358 0.90051 0.93092 0.91929 0.98465 0.99837 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.68 71.98 0.70 -1.52 16 2 C -0.15 -2.68 5.58 30.60 0.17 -2.51 16 3 C 0.11 2.50 2.79 44.91 0.13 2.63 16 4 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 5 N -0.84 -18.40 8.90 -168.67 -1.50 -19.91 16 6 C -0.03 -0.83 5.00 29.85 0.15 -0.68 16 7 C 0.21 7.53 6.89 138.13 0.95 8.48 16 8 N -0.50 -19.19 11.25 -188.13 -2.12 -21.31 16 9 C -0.05 -1.93 11.87 83.52 0.99 -0.94 16 10 C -0.07 -2.52 10.70 83.08 0.89 -1.63 16 11 N -0.45 -17.06 2.61 -491.90 -1.28 -18.34 16 12 C 0.14 5.43 2.94 44.99 0.13 5.56 16 13 H 0.10 3.58 6.67 -2.39 -0.02 3.57 16 14 C -0.14 -4.64 9.06 71.98 0.65 -3.99 16 15 C 0.03 1.67 4.46 29.85 0.13 1.80 16 16 C -0.53 -27.75 8.41 25.60 0.22 -27.54 16 17 H 0.08 3.63 7.06 -2.91 -0.02 3.60 16 18 C 0.00 0.20 5.46 84.65 0.46 0.66 16 19 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 20 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.78 6.87 -2.39 -0.02 0.77 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.34 6.85 9.00 -89.69 -0.81 6.05 16 30 H 0.34 6.24 7.55 -89.70 -0.68 5.56 16 31 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.08 2.30 7.08 -2.39 -0.02 2.28 16 33 H 0.18 5.43 8.06 -2.91 -0.02 5.40 16 34 H 0.17 5.93 8.06 -2.91 -0.02 5.91 16 35 H 0.08 2.81 6.95 -2.39 -0.02 2.79 16 36 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.00 -0.17 8.09 -2.39 -0.02 -0.19 16 39 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 40 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -64.65 326.50 2.52 -62.13 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.46 Total: 28.12 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 5.57 Total: -19.67 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.61 Total: -114.46 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -64.65 2.52 -62.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695884578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.887 kcal (2) G-P(sol) polarization free energy of solvation -64.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds