Wall clock time and date at job start Mon Mar 30 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47155 * 2 1 4 4 H 1.08997 * 109.47009 * 304.99600 * 3 2 1 5 5 N 1.46894 * 109.47153 * 64.99701 * 3 2 1 6 6 C 1.52995 * 109.47133 * 184.99763 * 3 2 1 7 7 C 1.50702 * 109.47176 * 174.99912 * 6 3 2 8 8 C 1.34670 * 125.99226 * 125.00281 * 7 6 3 9 9 N 1.36879 * 106.81946 * 179.97438 * 8 7 6 10 10 C 1.46496 * 126.39676 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47241 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.47017 * 119.99979 * 10 9 8 13 13 C 1.52997 * 109.47484 * 240.00284 * 10 9 8 14 14 C 1.50701 * 109.47212 * 175.00064 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.35043 * 107.20336 * 0.26430 * 9 8 7 23 23 N 1.30503 * 108.70144 * 359.55784 * 22 9 8 24 24 H 1.08994 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47403 * 300.00284 * 1 2 3 26 26 H 1.08998 * 109.46755 * 60.00182 * 1 2 3 27 27 H 1.08999 * 109.47403 * 239.99716 * 2 1 3 28 28 H 1.09007 * 109.46991 * 119.99812 * 2 1 3 29 29 H 1.00897 * 111.00212 * 60.00161 * 5 3 2 30 30 H 1.00907 * 111.00250 * 183.95343 * 5 3 2 31 31 H 1.09002 * 109.47159 * 54.99679 * 6 3 2 32 32 H 1.09000 * 109.47536 * 294.99824 * 6 3 2 33 33 H 1.08002 * 126.58729 * 359.96055 * 8 7 6 34 34 H 1.08996 * 109.47271 * 300.00777 * 12 10 9 35 35 H 1.09008 * 109.46731 * 60.00158 * 12 10 9 36 36 H 1.08998 * 109.47430 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.47153 * 55.00066 * 13 10 9 38 38 H 1.09001 * 109.46832 * 295.00256 * 13 10 9 39 39 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 40 40 H 1.08003 * 125.64532 * 179.72019 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6514 2.0993 1.2551 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2492 8 6 4.9771 3.4532 0.5376 9 7 5.1268 4.7345 0.0799 10 6 6.0242 5.7543 0.6284 11 1 6.5715 5.3393 1.4749 12 6 7.0141 6.1964 -0.4511 13 6 5.2037 6.9594 1.0925 14 6 6.1113 7.9551 1.7676 15 1 7.1678 7.7492 1.8564 16 6 5.5932 9.1295 2.2710 17 7 4.3068 9.3804 2.1624 18 14 6.7183 10.3640 3.1072 19 1 8.1111 9.8487 3.0998 20 1 6.6652 11.6560 2.3769 21 1 6.2733 10.5691 4.5090 22 6 4.2880 4.8849 -0.9678 23 7 3.6558 3.7600 -1.1625 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.0422 1.6180 2.0512 30 1 1.9204 3.0718 1.2528 31 1 3.8571 0.8800 -1.0112 32 1 4.0030 0.9836 0.7597 33 1 5.4968 3.0020 1.3699 34 1 7.5986 5.3379 -0.7818 35 1 6.4670 6.6113 -1.2978 36 1 7.6821 6.9548 -0.0429 37 1 4.4393 6.6293 1.7960 38 1 4.7271 7.4277 0.2313 39 1 3.9422 10.2065 2.5169 40 1 4.1633 5.7861 -1.5498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695887551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:08 Heat of formation + Delta-G solvation = 27.068260 kcal Electronic energy + Delta-G solvation = -18348.241150 eV Core-core repulsion = 15583.686181 eV Total energy + Delta-G solvation = -2764.554969 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.66850 -37.15074 -35.54227 -32.78209 -31.44463 -30.31493 -30.01493 -27.34815 -26.93868 -24.09748 -23.49927 -21.96843 -20.45478 -20.12893 -18.83677 -16.88061 -16.15807 -15.79056 -15.05190 -14.71833 -14.43297 -14.12406 -13.92205 -13.57925 -13.26930 -13.14197 -12.72636 -12.68016 -12.25823 -12.12241 -11.74403 -11.62202 -11.16322 -11.11766 -11.04248 -10.80727 -10.66360 -10.56447 -10.38282 -9.98166 -9.53359 -9.34424 -8.88615 -8.57335 -8.53820 -7.87352 -6.20763 -4.26279 2.55972 3.18987 3.26716 3.29139 3.42545 3.50633 4.29841 4.77844 4.82236 4.92792 5.15180 5.22330 5.29826 5.35010 5.38478 5.48601 5.61754 5.67728 5.73815 5.87004 5.90740 5.95230 6.00214 6.03415 6.18144 6.22330 6.40665 6.43128 6.45899 6.58342 6.87801 7.14348 7.34120 7.38236 7.42593 7.65602 7.66805 7.81236 8.10428 8.55091 8.78417 9.39356 10.90219 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.004212 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.232862 B = 6646.302586 C = 7099.566920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.098 3.902 4 H 0.087 0.913 5 N -0.839 5.839 6 C -0.062 4.062 7 C -0.017 4.017 8 C -0.059 4.059 9 N -0.435 5.435 10 C 0.126 3.874 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.022 3.978 14 C -0.527 4.527 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.191 3.809 23 N -0.500 5.500 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.331 0.669 30 H 0.346 0.654 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -14.005 -3.400 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.014 4.014 4 H 0.105 0.895 5 N -0.368 5.368 6 C -0.102 4.102 7 C -0.147 4.147 8 C -0.195 4.195 9 N -0.114 5.114 10 C 0.025 3.975 11 H 0.105 0.895 12 C -0.204 4.204 13 C -0.016 4.016 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.141 4.141 17 N -0.525 5.525 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.092 4.092 23 N -0.219 5.219 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.041 0.959 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.526 -14.051 -4.127 14.724 hybrid contribution 2.311 1.222 1.297 2.918 sum 0.785 -12.829 -2.830 13.161 Atomic orbital electron populations 1.21651 0.95424 1.00362 1.02618 1.21554 0.96684 0.95814 1.01275 1.21429 0.91604 0.94652 0.93721 0.89510 1.58957 1.66861 1.07399 1.03565 1.20629 0.97372 0.90498 1.01733 1.20420 1.00617 0.96711 0.96969 1.22404 1.06153 0.86384 1.04516 1.46015 1.30807 1.10511 1.24114 1.21979 0.90798 0.88881 0.95857 0.89496 1.22034 0.99011 1.00948 0.98403 1.19436 0.95193 0.89850 0.97126 1.21030 0.94348 1.02906 1.38241 0.92137 1.25000 0.95082 0.98177 0.95836 1.69970 1.11703 1.25404 1.45450 0.86479 0.80763 0.81145 0.79296 1.19640 1.20827 1.20850 1.24726 0.92990 0.98883 0.92603 1.70099 1.26281 1.00160 1.25351 0.93845 0.91578 0.93150 0.92072 0.92484 0.85733 0.84085 0.91163 0.91597 0.82110 0.94030 0.92433 0.89639 0.95858 0.95615 0.92680 0.78607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.80 37.16 0.36 -1.12 16 2 C -0.12 -1.19 5.58 -26.73 -0.15 -1.34 16 3 C 0.10 1.22 2.78 -67.72 -0.19 1.03 16 4 H 0.09 1.29 8.10 -51.93 -0.42 0.87 16 5 N -0.84 -10.82 8.65 -4.67 -0.04 -10.87 16 6 C -0.06 -0.78 5.43 -27.88 -0.15 -0.93 16 7 C -0.02 -0.27 5.53 -82.85 -0.46 -0.73 16 8 C -0.06 -0.95 11.43 -16.56 -0.19 -1.14 16 9 N -0.44 -7.68 2.62 -111.46 -0.29 -7.97 16 10 C 0.13 2.35 3.00 -67.93 -0.20 2.15 16 11 H 0.09 1.58 8.08 -51.92 -0.42 1.16 16 12 C -0.15 -2.44 9.06 37.16 0.34 -2.11 16 13 C 0.02 0.51 4.44 -27.88 -0.12 0.38 16 14 C -0.53 -13.48 8.41 -34.44 -0.29 -13.77 16 15 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 18 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.19 3.42 11.65 -90.37 -1.05 2.36 16 23 N -0.50 -8.96 11.20 -10.87 -0.12 -9.08 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.33 3.75 9.00 -39.29 -0.35 3.40 16 30 H 0.35 5.19 8.29 -39.29 -0.33 4.86 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.73 8.11 -51.93 -0.42 0.30 16 33 H 0.16 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.94 7.95 -51.92 -0.41 0.53 16 36 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.20 3.21 8.06 -52.48 -0.42 2.79 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -28.17 329.96 -8.82 -36.99 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.85 Total: 8.82 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.20 Total: -13.65 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.28 Total: -52.47 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.17 -8.82 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695887551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.054 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds