Wall clock time and date at job start Mon Mar 30 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47155 * 2 1 4 4 H 1.08997 * 109.47009 * 304.99600 * 3 2 1 5 5 N 1.46894 * 109.47153 * 64.99701 * 3 2 1 6 6 C 1.52995 * 109.47133 * 184.99763 * 3 2 1 7 7 C 1.50702 * 109.47176 * 174.99912 * 6 3 2 8 8 C 1.34670 * 125.99226 * 125.00281 * 7 6 3 9 9 N 1.36879 * 106.81946 * 179.97438 * 8 7 6 10 10 C 1.46496 * 126.39676 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47241 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.47017 * 119.99979 * 10 9 8 13 13 C 1.52997 * 109.47484 * 240.00284 * 10 9 8 14 14 C 1.50701 * 109.47212 * 175.00064 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.35043 * 107.20336 * 0.26430 * 9 8 7 23 23 N 1.30503 * 108.70144 * 359.55784 * 22 9 8 24 24 H 1.08994 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47403 * 300.00284 * 1 2 3 26 26 H 1.08998 * 109.46755 * 60.00182 * 1 2 3 27 27 H 1.08999 * 109.47403 * 239.99716 * 2 1 3 28 28 H 1.09007 * 109.46991 * 119.99812 * 2 1 3 29 29 H 1.00897 * 111.00212 * 60.00161 * 5 3 2 30 30 H 1.00907 * 111.00250 * 183.95343 * 5 3 2 31 31 H 1.09002 * 109.47159 * 54.99679 * 6 3 2 32 32 H 1.09000 * 109.47536 * 294.99824 * 6 3 2 33 33 H 1.08002 * 126.58729 * 359.96055 * 8 7 6 34 34 H 1.08996 * 109.47271 * 300.00777 * 12 10 9 35 35 H 1.09008 * 109.46731 * 60.00158 * 12 10 9 36 36 H 1.08998 * 109.47430 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.47153 * 55.00066 * 13 10 9 38 38 H 1.09001 * 109.46832 * 295.00256 * 13 10 9 39 39 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 40 40 H 1.08003 * 125.64532 * 179.72019 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6514 2.0993 1.2551 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2492 8 6 4.9771 3.4532 0.5376 9 7 5.1268 4.7345 0.0799 10 6 6.0242 5.7543 0.6284 11 1 6.5715 5.3393 1.4749 12 6 7.0141 6.1964 -0.4511 13 6 5.2037 6.9594 1.0925 14 6 6.1113 7.9551 1.7676 15 1 7.1678 7.7492 1.8564 16 6 5.5932 9.1295 2.2710 17 7 4.3068 9.3804 2.1624 18 14 6.7183 10.3640 3.1072 19 1 8.1111 9.8487 3.0998 20 1 6.6652 11.6560 2.3769 21 1 6.2733 10.5691 4.5090 22 6 4.2880 4.8849 -0.9678 23 7 3.6558 3.7600 -1.1625 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.0422 1.6180 2.0512 30 1 1.9204 3.0718 1.2528 31 1 3.8571 0.8800 -1.0112 32 1 4.0030 0.9836 0.7597 33 1 5.4968 3.0020 1.3699 34 1 7.5986 5.3379 -0.7818 35 1 6.4670 6.6113 -1.2978 36 1 7.6821 6.9548 -0.0429 37 1 4.4393 6.6293 1.7960 38 1 4.7271 7.4277 0.2313 39 1 3.9422 10.2065 2.5169 40 1 4.1633 5.7861 -1.5498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695887551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:07 Heat of formation + Delta-G solvation = 11.482355 kcal Electronic energy + Delta-G solvation = -18348.917006 eV Core-core repulsion = 15583.686181 eV Total energy + Delta-G solvation = -2765.230824 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.00443 -38.22552 -37.04916 -34.65553 -32.48371 -31.76054 -31.16030 -29.05904 -28.12970 -25.79500 -24.54648 -23.54436 -21.53382 -21.39422 -20.17281 -18.71629 -17.55807 -16.99151 -16.63960 -16.18090 -15.60231 -15.48352 -15.07645 -14.86013 -14.64435 -14.37921 -14.13347 -13.82355 -13.76681 -13.41592 -13.16803 -12.87166 -12.80627 -12.57317 -12.35361 -12.12899 -12.06609 -11.69008 -11.65421 -11.51536 -11.36214 -10.79236 -10.63083 -10.33630 -9.61621 -9.12438 -8.25033 -6.36848 1.23018 1.40488 1.42163 1.53722 2.02139 2.18793 2.40456 3.10512 3.68332 3.77883 3.79999 3.95352 4.06634 4.20760 4.26979 4.39701 4.41135 4.49956 4.55055 4.75840 4.83779 4.89538 4.93141 4.96035 5.10822 5.14943 5.21395 5.21821 5.31337 5.35470 5.46335 5.56670 5.65424 5.70441 5.93101 6.05299 6.31352 6.39590 6.65709 6.78282 7.22144 7.33577 8.87091 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.004212 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.232862 B = 6646.302586 C = 7099.566920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.103 3.897 4 H 0.057 0.943 5 N -0.841 5.841 6 C -0.057 4.057 7 C -0.019 4.019 8 C -0.065 4.065 9 N -0.440 5.440 10 C 0.139 3.861 11 H 0.097 0.903 12 C -0.138 4.138 13 C 0.032 3.968 14 C -0.532 4.532 15 H 0.074 0.926 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.964 3.036 19 H -0.256 1.256 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.172 3.828 23 N -0.517 5.517 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.342 0.658 30 H 0.332 0.668 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.188 0.812 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.081 0.919 37 H -0.014 1.014 38 H 0.001 0.999 39 H 0.263 0.737 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -15.508 -2.935 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.009 4.009 4 H 0.076 0.924 5 N -0.370 5.370 6 C -0.098 4.098 7 C -0.149 4.149 8 C -0.199 4.199 9 N -0.120 5.120 10 C 0.037 3.963 11 H 0.115 0.885 12 C -0.196 4.196 13 C -0.006 4.006 14 C -0.571 4.571 15 H 0.093 0.907 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.179 1.179 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.111 4.111 23 N -0.237 5.237 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.205 0.795 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.004 0.996 38 H 0.019 0.981 39 H 0.072 0.928 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.134 -15.589 -3.667 16.015 hybrid contribution 1.728 1.631 1.134 2.633 sum 1.861 -13.958 -2.533 14.308 Atomic orbital electron populations 1.21631 0.95620 1.01141 1.01547 1.21525 0.96448 0.94239 1.02535 1.21354 0.91524 0.95619 0.92437 0.92424 1.58947 1.67118 1.06600 1.04310 1.20712 0.97275 0.88646 1.03126 1.20948 1.00096 0.97764 0.96111 1.22913 1.06266 0.85688 1.05046 1.45948 1.30887 1.10946 1.24195 1.21675 0.90297 0.87342 0.96999 0.88492 1.21948 0.98441 1.01703 0.97494 1.19215 0.94618 0.91617 0.95141 1.21475 0.95209 1.03058 1.37327 0.90746 1.25930 0.96377 1.00463 0.96718 1.70113 1.13794 1.26124 1.47071 0.85400 0.79423 0.78455 0.77793 1.17911 1.20757 1.20925 1.24908 0.93609 0.99321 0.93236 1.70113 1.26516 1.00661 1.26366 0.92132 0.92830 0.94055 0.90883 0.91049 0.84545 0.85683 0.90449 0.89281 0.79527 0.91669 0.92720 0.90048 0.99556 0.98072 0.92780 0.78349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 71.98 0.71 -2.05 16 2 C -0.11 -2.03 5.58 30.60 0.17 -1.86 16 3 C 0.10 2.45 2.78 44.92 0.13 2.57 16 4 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 5 N -0.84 -21.13 8.65 -168.70 -1.46 -22.59 16 6 C -0.06 -1.33 5.43 29.85 0.16 -1.17 16 7 C -0.02 -0.59 5.53 41.39 0.23 -0.36 16 8 C -0.06 -1.98 11.43 83.09 0.95 -1.03 16 9 N -0.44 -15.29 2.62 -506.54 -1.33 -16.61 16 10 C 0.14 5.08 3.00 44.99 0.14 5.21 16 11 H 0.10 3.37 8.08 -2.38 -0.02 3.35 16 12 C -0.14 -4.41 9.06 71.98 0.65 -3.76 16 13 C 0.03 1.53 4.44 29.85 0.13 1.66 16 14 C -0.53 -27.20 8.41 25.60 0.22 -26.98 16 15 H 0.07 3.53 7.06 -2.91 -0.02 3.51 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 18 Si 0.96 41.57 29.54 68.60 2.03 43.59 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.17 6.21 11.65 180.26 2.10 8.31 16 23 N -0.52 -18.55 11.20 -188.31 -2.11 -20.66 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 1.17 7.75 -2.39 -0.02 1.15 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.34 7.22 9.00 -89.70 -0.81 6.41 16 30 H 0.33 10.00 8.29 -89.69 -0.74 9.25 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.67 8.11 -2.39 -0.02 1.65 16 33 H 0.19 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.76 7.95 -2.38 -0.02 1.74 16 36 H 0.08 2.66 6.95 -2.39 -0.02 2.65 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.00 0.05 8.08 -2.39 -0.02 0.03 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.20 6.78 8.06 -2.91 -0.02 6.76 16 Total: -1.00 -61.07 329.96 2.92 -58.15 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.54 Total: 30.98 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 6.04 Total: -18.80 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -4.61 Total: -113.93 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -61.07 2.92 -58.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695887551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.631 kcal (2) G-P(sol) polarization free energy of solvation -61.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds