Wall clock time and date at job start Mon Mar 30 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30501 * 125.64898 * 269.69158 * 3 2 1 5 5 C 1.34125 * 109.25535 * 179.89273 * 4 3 2 6 6 C 1.50703 * 125.98981 * 180.11699 * 5 4 3 7 7 H 1.08996 * 109.46933 * 65.30043 * 6 5 4 8 8 C 1.53002 * 109.46971 * 305.30290 * 6 5 4 9 9 N 1.46900 * 109.47079 * 185.30384 * 6 5 4 10 10 C 1.34666 * 108.02059 * 0.37235 * 5 4 3 11 11 N 1.35041 * 125.64895 * 90.00187 * 3 2 1 12 12 C 1.46495 * 126.39891 * 359.94346 * 11 3 2 13 13 H 1.09001 * 109.47318 * 359.97438 * 12 11 3 14 14 C 1.53000 * 109.47060 * 239.99696 * 12 11 3 15 15 C 1.52999 * 109.47305 * 119.99927 * 12 11 3 16 16 C 1.50701 * 109.47309 * 184.99819 * 15 12 11 17 17 H 1.07997 * 119.99998 * 0.02562 * 16 15 12 18 18 C 1.37872 * 119.99893 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99980 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00215 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47070 * 90.00306 * 20 18 16 22 22 H 1.48500 * 109.47030 * 210.00120 * 20 18 16 23 23 H 1.48500 * 109.46893 * 329.99936 * 20 18 16 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.09005 * 109.46858 * 299.99843 * 8 6 5 30 30 H 1.08994 * 109.47339 * 60.00006 * 8 6 5 31 31 H 1.09002 * 109.47036 * 179.97438 * 8 6 5 32 32 H 1.00902 * 110.99788 * 180.02562 * 9 6 5 33 33 H 1.00899 * 110.99593 * 303.94783 * 9 6 5 34 34 H 1.07999 * 126.59306 * 179.81257 * 10 5 4 35 35 H 1.08998 * 109.47741 * 300.00223 * 14 12 11 36 36 H 1.09010 * 109.47199 * 60.00293 * 14 12 11 37 37 H 1.09000 * 109.47549 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.47062 * 305.00349 * 15 12 11 39 39 H 1.09001 * 109.47012 * 65.00082 * 15 12 11 40 40 H 0.96994 * 120.00432 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2912 2.1361 -1.0604 5 6 2.7159 3.3507 -0.6819 6 6 3.1153 4.4756 -1.6018 7 1 2.2453 4.8083 -2.1679 8 6 4.1955 3.9851 -2.5681 9 7 3.6401 5.5945 -0.8077 10 6 2.7282 3.3869 0.6642 11 7 2.2946 2.1629 1.0973 12 6 2.1431 1.7375 2.4910 13 1 1.7787 0.7107 2.5199 14 6 1.1420 2.6536 3.1978 15 6 3.4969 1.8189 3.1992 16 6 3.3676 1.2663 4.5952 17 1 2.4152 0.8939 4.9425 18 6 4.4651 1.2361 5.4291 19 7 4.3524 0.7534 6.6473 20 14 6.1123 1.8809 4.8287 21 1 6.2227 3.3276 5.1450 22 1 7.2091 1.1415 5.5037 23 1 6.2146 1.6861 3.3601 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.0655 3.6524 -2.0019 30 1 3.8061 3.1549 -3.1572 31 1 4.4840 4.7987 -3.2337 32 1 3.9147 6.3623 -1.4021 33 1 2.9681 5.8946 -0.1175 34 1 3.0229 4.2214 1.2831 35 1 1.5059 3.6806 3.1689 36 1 0.1774 2.5956 2.6933 37 1 1.0288 2.3369 4.2346 38 1 4.2326 1.2365 2.6445 39 1 3.8192 2.8590 3.2485 40 1 5.1244 0.7325 7.2341 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695892068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:01 Heat of formation + Delta-G solvation = 35.432856 kcal Electronic energy + Delta-G solvation = -19006.744036 eV Core-core repulsion = 16242.551783 eV Total energy + Delta-G solvation = -2764.192253 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78917 -36.42263 -35.18490 -33.34100 -32.60463 -30.38509 -28.77378 -28.04096 -27.66919 -23.92678 -23.73815 -22.57622 -20.48156 -19.48123 -18.81170 -17.19652 -16.22760 -15.47817 -15.11733 -14.75166 -14.56370 -14.21819 -14.00063 -13.50936 -13.37668 -13.12641 -12.80861 -12.26464 -12.20852 -11.90664 -11.76777 -11.63266 -11.45085 -11.31670 -11.19908 -11.05636 -10.88601 -10.42294 -10.27644 -9.96227 -9.54361 -9.35279 -8.95009 -8.68753 -8.65049 -7.76534 -6.19659 -4.20735 2.56066 3.23378 3.31726 3.35785 3.37662 3.44344 4.33478 4.37824 4.77861 5.04411 5.12189 5.17436 5.30056 5.40434 5.44320 5.47542 5.56478 5.65244 5.70670 5.82936 5.94385 5.97030 5.97704 6.04408 6.21207 6.24860 6.32438 6.40789 6.42691 6.62998 6.82549 6.96349 7.07337 7.17336 7.19423 7.47007 7.52281 7.79388 8.31101 8.55681 8.80490 9.41239 10.92427 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.007130 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.984390 B = 3926.244800 C = 4849.350331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 C 0.200 3.800 4 N -0.493 5.493 5 C -0.017 4.017 6 C 0.181 3.819 7 H 0.039 0.961 8 C -0.133 4.133 9 N -0.844 5.844 10 C -0.026 4.026 11 N -0.437 5.437 12 C 0.135 3.865 13 H 0.096 0.904 14 C -0.146 4.146 15 C -0.014 4.014 16 C -0.524 4.524 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.342 0.658 33 H 0.341 0.659 34 H 0.168 0.832 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.089 0.911 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 4.965 -13.687 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.062 4.062 4 N -0.213 5.213 5 C -0.146 4.146 6 C 0.069 3.931 7 H 0.056 0.944 8 C -0.191 4.191 9 N -0.376 5.376 10 C -0.161 4.161 11 N -0.117 5.117 12 C 0.034 3.966 13 H 0.114 0.886 14 C -0.204 4.204 15 C -0.052 4.052 16 C -0.562 4.562 17 H 0.096 0.904 18 C -0.128 4.128 19 N -0.533 5.533 20 Si 0.703 3.297 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.185 0.815 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.828 4.084 -13.925 15.294 hybrid contribution 0.355 1.220 0.431 1.342 sum -4.473 5.304 -13.494 15.173 Atomic orbital electron populations 1.21715 0.94389 1.01823 1.02233 1.19911 0.96052 0.87902 1.03863 1.23017 1.05061 0.96526 0.81621 1.69897 1.19253 1.03460 1.28686 1.20222 1.08346 0.94588 0.91480 1.19219 0.95109 0.87752 0.90996 0.94353 1.21692 0.98764 1.00654 0.98009 1.58617 1.47636 1.11508 1.19806 1.22217 1.07876 0.90401 0.95634 1.45871 1.46419 1.11152 1.08249 1.21707 0.99811 0.99174 0.75925 0.88598 1.22031 0.96748 0.99491 1.02113 1.19899 0.90993 0.97653 0.96679 1.20870 0.98202 1.42072 0.95101 0.90434 1.24930 0.98830 0.94428 0.94624 1.69884 1.30993 1.45549 1.06919 0.86836 0.83848 0.79376 0.79669 1.20057 1.21139 1.19000 0.92301 0.91950 0.92777 0.90082 0.89292 0.92107 0.91642 0.93342 0.84531 0.84583 0.81510 0.92625 0.93864 0.89250 0.95959 0.96176 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 37.16 0.37 -1.36 16 2 C -0.04 -0.54 6.08 -27.88 -0.17 -0.71 16 3 C 0.20 3.51 7.16 -155.42 -1.11 2.39 16 4 N -0.49 -8.95 11.23 -7.07 -0.08 -9.03 16 5 C -0.02 -0.28 6.31 -82.85 -0.52 -0.81 16 6 C 0.18 2.49 3.91 -68.86 -0.27 2.22 16 7 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 8 C -0.13 -1.74 9.45 37.16 0.35 -1.39 16 9 N -0.84 -9.95 8.76 -5.65 -0.05 -10.00 16 10 C -0.03 -0.46 9.76 -16.56 -0.16 -0.62 16 11 N -0.44 -7.94 2.61 -106.83 -0.28 -8.22 16 12 C 0.14 2.55 2.94 -67.93 -0.20 2.35 16 13 H 0.10 1.77 6.67 -51.93 -0.35 1.42 16 14 C -0.15 -2.51 9.06 37.16 0.34 -2.17 16 15 C -0.01 -0.33 3.52 -27.88 -0.10 -0.42 16 16 C -0.52 -13.89 8.96 -34.44 -0.31 -14.20 16 17 H 0.08 2.15 7.30 -52.49 -0.38 1.77 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -26.43 13.96 55.43 0.77 -25.65 16 20 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.14 7.08 -51.93 -0.37 0.77 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.34 3.15 9.04 -39.29 -0.36 2.79 16 33 H 0.34 3.72 8.17 -39.29 -0.32 3.39 16 34 H 0.17 2.77 7.43 -52.49 -0.39 2.38 16 35 H 0.05 0.93 7.95 -51.93 -0.41 0.52 16 36 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.09 1.64 6.95 -51.93 -0.36 1.28 16 38 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 39 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -30.41 324.20 -7.97 -38.39 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.67 Total: 5.62 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.88 Total: -12.73 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.37 Total: -52.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.41 -7.97 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.819 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds