Wall clock time and date at job start Mon Mar 30 2020 06:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30501 * 125.64898 * 269.69158 * 3 2 1 5 5 C 1.34125 * 109.25535 * 179.89273 * 4 3 2 6 6 C 1.50703 * 125.98981 * 180.11699 * 5 4 3 7 7 H 1.08996 * 109.46933 * 65.30043 * 6 5 4 8 8 C 1.53002 * 109.46971 * 305.30290 * 6 5 4 9 9 N 1.46900 * 109.47079 * 185.30384 * 6 5 4 10 10 C 1.34666 * 108.02059 * 0.37235 * 5 4 3 11 11 N 1.35041 * 125.64895 * 90.00187 * 3 2 1 12 12 C 1.46495 * 126.39891 * 359.94346 * 11 3 2 13 13 H 1.09001 * 109.47318 * 359.97438 * 12 11 3 14 14 C 1.53000 * 109.47060 * 239.99696 * 12 11 3 15 15 C 1.52999 * 109.47305 * 119.99927 * 12 11 3 16 16 C 1.50701 * 109.47309 * 184.99819 * 15 12 11 17 17 H 1.07997 * 119.99998 * 0.02562 * 16 15 12 18 18 C 1.37872 * 119.99893 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99980 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00215 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47070 * 90.00306 * 20 18 16 22 22 H 1.48500 * 109.47030 * 210.00120 * 20 18 16 23 23 H 1.48500 * 109.46893 * 329.99936 * 20 18 16 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.09005 * 109.46858 * 299.99843 * 8 6 5 30 30 H 1.08994 * 109.47339 * 60.00006 * 8 6 5 31 31 H 1.09002 * 109.47036 * 179.97438 * 8 6 5 32 32 H 1.00902 * 110.99788 * 180.02562 * 9 6 5 33 33 H 1.00899 * 110.99593 * 303.94783 * 9 6 5 34 34 H 1.07999 * 126.59306 * 179.81257 * 10 5 4 35 35 H 1.08998 * 109.47741 * 300.00223 * 14 12 11 36 36 H 1.09010 * 109.47199 * 60.00293 * 14 12 11 37 37 H 1.09000 * 109.47549 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.47062 * 305.00349 * 15 12 11 39 39 H 1.09001 * 109.47012 * 65.00082 * 15 12 11 40 40 H 0.96994 * 120.00432 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2912 2.1361 -1.0604 5 6 2.7159 3.3507 -0.6819 6 6 3.1153 4.4756 -1.6018 7 1 2.2453 4.8083 -2.1679 8 6 4.1955 3.9851 -2.5681 9 7 3.6401 5.5945 -0.8077 10 6 2.7282 3.3869 0.6642 11 7 2.2946 2.1629 1.0973 12 6 2.1431 1.7375 2.4910 13 1 1.7787 0.7107 2.5199 14 6 1.1420 2.6536 3.1978 15 6 3.4969 1.8189 3.1992 16 6 3.3676 1.2663 4.5952 17 1 2.4152 0.8939 4.9425 18 6 4.4651 1.2361 5.4291 19 7 4.3524 0.7534 6.6473 20 14 6.1123 1.8809 4.8287 21 1 6.2227 3.3276 5.1450 22 1 7.2091 1.1415 5.5037 23 1 6.2146 1.6861 3.3601 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.0655 3.6524 -2.0019 30 1 3.8061 3.1549 -3.1572 31 1 4.4840 4.7987 -3.2337 32 1 3.9147 6.3623 -1.4021 33 1 2.9681 5.8946 -0.1175 34 1 3.0229 4.2214 1.2831 35 1 1.5059 3.6806 3.1689 36 1 0.1774 2.5956 2.6933 37 1 1.0288 2.3369 4.2346 38 1 4.2326 1.2365 2.6445 39 1 3.8192 2.8590 3.2485 40 1 5.1244 0.7325 7.2341 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695892068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:00 Heat of formation + Delta-G solvation = 16.425755 kcal Electronic energy + Delta-G solvation = -19007.568245 eV Core-core repulsion = 16242.551783 eV Total energy + Delta-G solvation = -2765.016462 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.13031 -37.76195 -36.52933 -34.59791 -34.41597 -31.94062 -29.86135 -29.43448 -29.17840 -25.59113 -24.82837 -24.01255 -21.97886 -20.77698 -20.18475 -19.08269 -17.64996 -16.74989 -16.37730 -16.22442 -15.95513 -15.62860 -15.23512 -14.98688 -14.78870 -14.48182 -14.28117 -13.90305 -13.42682 -13.32211 -13.07529 -12.87560 -12.78680 -12.73840 -12.49412 -12.33009 -12.14872 -12.04270 -11.88120 -11.84163 -11.46729 -10.84567 -10.82482 -10.36115 -9.63842 -9.06518 -8.34752 -6.38716 1.20702 1.29360 1.33471 1.42740 1.96388 2.13665 2.29136 3.00255 3.29887 3.71301 3.76145 3.88278 4.10450 4.13115 4.28386 4.32864 4.35862 4.39812 4.42158 4.66970 4.74177 4.80780 4.86097 4.97325 5.00081 5.00646 5.09413 5.13517 5.15973 5.23190 5.31415 5.35245 5.49552 5.62538 5.87800 6.16468 6.21634 6.41483 6.67143 6.67461 7.22179 7.26040 8.80276 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.007130 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.984390 B = 3926.244800 C = 4849.350331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 C 0.193 3.807 4 N -0.511 5.511 5 C -0.020 4.020 6 C 0.182 3.818 7 H 0.048 0.952 8 C -0.127 4.127 9 N -0.848 5.848 10 C -0.045 4.045 11 N -0.444 5.444 12 C 0.144 3.856 13 H 0.099 0.901 14 C -0.138 4.138 15 C -0.006 4.006 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.021 3.979 19 N -0.938 5.938 20 Si 0.934 3.066 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.264 1.264 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.358 0.642 33 H 0.347 0.653 34 H 0.174 0.826 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.008 0.992 39 H 0.020 0.980 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 5.829 -15.265 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 C -0.069 4.069 4 N -0.231 5.231 5 C -0.150 4.150 6 C 0.070 3.930 7 H 0.066 0.934 8 C -0.185 4.185 9 N -0.382 5.382 10 C -0.179 4.179 11 N -0.125 5.125 12 C 0.042 3.958 13 H 0.117 0.883 14 C -0.195 4.195 15 C -0.044 4.044 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.178 4.178 19 N -0.578 5.578 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.188 1.188 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.191 0.809 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.038 0.962 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.880 4.975 -15.525 17.018 hybrid contribution 0.321 0.932 0.883 1.323 sum -4.559 5.908 -14.643 16.435 Atomic orbital electron populations 1.21661 0.92677 1.03287 1.01715 1.20079 0.97476 0.86140 1.04262 1.23695 1.04374 0.97576 0.81271 1.69946 1.20019 1.04143 1.28976 1.20796 1.07211 0.95030 0.91915 1.19258 0.95662 0.87410 0.90678 0.93411 1.21626 0.97617 1.01326 0.97927 1.58560 1.47707 1.11771 1.20125 1.22457 1.08708 0.90571 0.96159 1.45810 1.47240 1.11630 1.07811 1.21439 0.97847 1.00006 0.76466 0.88305 1.21926 0.97368 0.99115 1.01117 1.19733 0.93074 0.96787 0.94813 1.21116 0.97148 1.40877 0.96635 0.92634 1.25696 1.02304 0.95005 0.94766 1.69998 1.32093 1.47489 1.08229 0.85907 0.79972 0.79199 0.79048 1.19074 1.20780 1.18842 0.92543 0.89535 0.93470 0.90268 0.88243 0.94079 0.92530 0.90601 0.82747 0.83986 0.80852 0.92254 0.91691 0.90785 0.97396 0.96194 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.89 71.98 0.71 -2.28 16 2 C -0.04 -1.09 6.08 29.85 0.18 -0.91 16 3 C 0.19 6.53 7.16 138.13 0.99 7.52 16 4 N -0.51 -17.91 11.23 -176.28 -1.98 -19.89 16 5 C -0.02 -0.66 6.31 41.39 0.26 -0.40 16 6 C 0.18 4.65 3.91 44.17 0.17 4.82 16 7 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 8 C -0.13 -3.09 9.45 71.98 0.68 -2.41 16 9 N -0.85 -18.12 8.76 -171.80 -1.51 -19.62 16 10 C -0.04 -1.52 9.76 83.08 0.81 -0.71 16 11 N -0.44 -15.65 2.61 -491.91 -1.28 -16.93 16 12 C 0.14 5.35 2.94 44.99 0.13 5.48 16 13 H 0.10 3.58 6.67 -2.39 -0.02 3.57 16 14 C -0.14 -4.57 9.06 71.98 0.65 -3.92 16 15 C -0.01 -0.27 3.52 29.85 0.11 -0.17 16 16 C -0.52 -27.71 8.96 25.60 0.23 -27.48 16 17 H 0.06 3.15 7.30 -2.91 -0.02 3.13 16 18 C 0.02 1.17 5.47 84.65 0.46 1.63 16 19 N -0.94 -56.06 13.96 21.45 0.30 -55.76 16 20 Si 0.93 43.97 27.47 68.60 1.88 45.86 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 2.14 7.08 -2.39 -0.02 2.12 16 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.36 5.64 9.04 -89.69 -0.81 4.83 16 33 H 0.35 6.84 8.17 -89.69 -0.73 6.10 16 34 H 0.17 5.51 7.43 -2.91 -0.02 5.49 16 35 H 0.06 1.91 7.95 -2.39 -0.02 1.89 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 2.69 6.95 -2.39 -0.02 2.68 16 38 H 0.01 0.37 7.20 -2.39 -0.02 0.36 16 39 H 0.02 0.90 7.51 -2.39 -0.02 0.88 16 40 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -64.21 324.20 2.24 -61.98 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.57 Total: 23.19 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 5.39 Total: -18.82 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -4.47 Total: -112.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -64.21 2.24 -61.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.404 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds