Wall clock time and date at job start Mon Mar 30 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.35249 * 126.06659 * 2 1 4 4 N 1.34963 * 107.85894 * 180.29066 * 3 2 1 5 5 C 1.46501 * 125.97126 * 179.72800 * 4 3 2 6 6 N 1.40073 * 108.05346 * 359.72985 * 4 3 2 7 7 C 1.31224 * 108.17380 * 0.02562 * 6 4 3 8 8 N 1.39985 * 125.97669 * 180.02562 * 7 6 4 9 9 C 1.46496 * 119.99805 * 0.02562 * 8 7 6 10 10 C 1.53006 * 109.46995 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46626 * 299.99666 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99963 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46879 * 60.00177 * 18 16 14 20 20 H 1.48494 * 109.47196 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47151 * 300.00589 * 18 16 14 22 22 H 1.08997 * 109.46772 * 270.15831 * 1 2 3 23 23 H 1.09002 * 109.46871 * 30.16030 * 1 2 3 24 24 H 1.08997 * 109.46718 * 150.15726 * 1 2 3 25 25 H 1.08002 * 126.07180 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47245 * 269.98089 * 5 4 3 27 27 H 1.09007 * 109.47036 * 29.97656 * 5 4 3 28 28 H 1.08993 * 109.47061 * 149.97938 * 5 4 3 29 29 H 0.96998 * 120.00003 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.47464 * 60.00601 * 9 8 7 31 31 H 1.09001 * 109.47459 * 300.00316 * 9 8 7 32 32 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 33 33 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 34 34 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 35 35 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 36 36 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 38 38 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 39 39 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 40 40 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0933 0.0000 4 7 3.5854 0.6716 -0.0065 5 6 4.7733 1.5290 -0.0145 6 7 3.5817 -0.7292 -0.0044 7 6 2.3338 -1.1351 0.0026 8 7 1.9022 -2.4668 0.0073 9 6 2.8834 -3.5547 0.0051 10 6 2.1537 -4.8995 0.0105 11 6 1.2819 -5.0015 1.2637 12 6 1.2712 -5.0060 -1.2348 13 6 3.1783 -6.0357 0.0088 14 6 2.4596 -7.3602 0.0148 15 1 1.3800 -7.3888 0.0190 16 6 3.1803 -8.5357 0.0140 17 7 4.4950 -8.5009 0.0084 18 14 2.2894 -10.1776 0.0207 19 1 1.4331 -10.2810 -1.1881 20 1 3.2839 -11.2804 0.0192 21 1 1.4430 -10.2765 1.2369 22 1 -0.3633 0.0028 1.0277 23 1 -0.3633 0.8886 -0.5163 24 1 -0.3633 -0.8914 -0.5114 25 1 1.9721 2.1212 0.0004 26 1 5.0623 1.7398 -1.0440 27 1 4.5497 2.4643 0.4989 28 1 5.5914 1.0209 0.4959 29 1 0.9536 -2.6692 0.0121 30 1 3.5123 -3.4786 0.8921 31 1 3.5043 -3.4822 -0.8879 32 1 0.5519 -4.1920 1.2654 33 1 0.7624 -5.9597 1.2678 34 1 1.9105 -4.9257 2.1509 35 1 1.8923 -4.9332 -2.1276 36 1 0.7511 -5.9639 -1.2306 37 1 0.5412 -4.1965 -1.2331 38 1 3.7998 -5.9632 -0.8837 39 1 3.8067 -5.9596 0.8963 40 1 5.0021 -9.3278 0.0082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697711005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:51 Heat of formation + Delta-G solvation = 62.112656 kcal Electronic energy + Delta-G solvation = -18512.333396 eV Core-core repulsion = 15749.298067 eV Total energy + Delta-G solvation = -2763.035330 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91454 -37.58124 -34.56851 -32.72426 -31.89100 -30.84644 -27.70346 -26.92850 -26.39041 -25.93047 -24.43992 -22.66573 -20.45947 -19.80461 -17.93444 -16.80843 -16.24644 -15.43164 -15.28590 -14.71967 -14.39751 -14.07264 -13.37954 -13.35789 -13.21808 -12.90258 -12.59193 -12.52314 -12.34629 -11.99656 -11.98742 -11.84641 -11.13052 -10.93749 -10.81143 -10.55516 -10.30432 -10.18030 -10.10840 -9.99251 -9.62152 -9.09899 -8.85456 -8.35065 -8.30314 -7.22872 -5.94708 -3.95486 2.10887 2.64159 3.25519 3.35721 3.40630 3.42315 3.94080 4.49868 4.64868 4.87691 5.12451 5.30041 5.36279 5.40783 5.46515 5.63013 5.75692 5.77699 5.83045 5.88929 5.95485 6.22909 6.32210 6.34291 6.38688 6.54697 6.54951 6.73878 6.79575 7.15331 7.18076 7.20946 7.23623 7.59532 7.70987 7.84764 7.91436 8.05005 8.46111 8.48142 9.09265 9.67121 11.16841 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.038738 B = 0.004309 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.633650 B = 6496.460631 C = 7012.120280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.281 4.281 3 C 0.070 3.930 4 N -0.386 5.386 5 C 0.112 3.888 6 N -0.351 5.351 7 C 0.348 3.652 8 N -0.711 5.711 9 C 0.146 3.854 10 C -0.072 4.072 11 C -0.125 4.125 12 C -0.125 4.125 13 C 0.037 3.963 14 C -0.510 4.510 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.167 0.833 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.406 0.594 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 19.610 0.048 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.296 4.296 3 C -0.077 4.077 4 N -0.168 5.168 5 C -0.030 4.030 6 N -0.184 5.184 7 C 0.088 3.912 8 N -0.353 5.353 9 C 0.022 3.978 10 C -0.072 4.072 11 C -0.182 4.182 12 C -0.182 4.182 13 C -0.001 4.001 14 C -0.548 4.548 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.184 0.816 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.243 0.757 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.738 19.155 0.040 19.516 hybrid contribution -1.414 -0.702 -0.005 1.579 sum -5.152 18.453 0.035 19.159 Atomic orbital electron populations 1.19930 0.89723 1.01652 1.01045 1.19728 0.96620 0.90936 1.22308 1.22062 0.84367 0.99183 1.02068 1.47866 1.04881 1.04329 1.59736 1.21672 0.86080 0.92513 1.02722 1.77556 1.17516 0.87906 1.35450 1.19257 0.90635 0.86490 0.94781 1.44077 1.08710 0.99372 1.83188 1.21437 0.90506 0.85239 1.00577 1.20873 0.97330 0.94035 0.94965 1.21733 0.98614 1.00619 0.97269 1.21731 0.98557 1.00613 0.97321 1.19077 0.92852 0.90799 0.97344 1.21173 0.92905 0.90633 1.50103 0.92326 1.25012 0.94774 0.99083 0.95625 1.69959 1.05180 1.27391 1.51004 0.86717 0.79374 0.83734 0.78515 1.20337 1.21430 1.20341 0.92609 0.92431 0.92414 0.81614 0.91430 0.90114 0.89628 0.75677 0.92958 0.92972 0.95155 0.91674 0.93524 0.93519 0.91675 0.95176 0.96452 0.96450 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.21 36.01 0.37 -0.32 16 2 C -0.28 -3.82 6.12 -104.86 -0.64 -4.46 16 3 C 0.07 0.82 11.39 -17.24 -0.20 0.62 16 4 N -0.39 -5.17 4.01 -68.18 -0.27 -5.44 16 5 C 0.11 0.95 11.47 59.85 0.69 1.64 16 6 N -0.35 -6.17 12.24 31.41 0.38 -5.79 16 7 C 0.35 5.82 7.87 -154.55 -1.22 4.60 16 8 N -0.71 -11.82 5.17 -60.06 -0.31 -12.13 16 9 C 0.15 2.79 4.93 -4.04 -0.02 2.77 16 10 C -0.07 -1.44 0.54 -154.51 -0.08 -1.53 16 11 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 12 C -0.12 -2.35 8.05 37.16 0.30 -2.05 16 13 C 0.04 0.93 4.04 -27.89 -0.11 0.82 16 14 C -0.51 -13.90 7.65 -34.44 -0.26 -14.17 16 15 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 25 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.41 6.09 5.68 -40.82 -0.23 5.86 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 33 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 37 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -32.38 323.28 -7.13 -39.51 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.54 Total: 1.24 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.98 Total: -12.64 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.54 Total: -49.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.38 -7.13 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697711005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.626 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds