Wall clock time and date at job start Mon Mar 30 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.35249 * 126.06659 * 2 1 4 4 N 1.34963 * 107.85894 * 180.29066 * 3 2 1 5 5 C 1.46501 * 125.97126 * 179.72800 * 4 3 2 6 6 N 1.40073 * 108.05346 * 359.72985 * 4 3 2 7 7 C 1.31224 * 108.17380 * 0.02562 * 6 4 3 8 8 N 1.39985 * 125.97669 * 180.02562 * 7 6 4 9 9 C 1.46496 * 119.99805 * 0.02562 * 8 7 6 10 10 C 1.53006 * 109.46995 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46626 * 299.99666 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99963 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46879 * 60.00177 * 18 16 14 20 20 H 1.48494 * 109.47196 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47151 * 300.00589 * 18 16 14 22 22 H 1.08997 * 109.46772 * 270.15831 * 1 2 3 23 23 H 1.09002 * 109.46871 * 30.16030 * 1 2 3 24 24 H 1.08997 * 109.46718 * 150.15726 * 1 2 3 25 25 H 1.08002 * 126.07180 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47245 * 269.98089 * 5 4 3 27 27 H 1.09007 * 109.47036 * 29.97656 * 5 4 3 28 28 H 1.08993 * 109.47061 * 149.97938 * 5 4 3 29 29 H 0.96998 * 120.00003 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.47464 * 60.00601 * 9 8 7 31 31 H 1.09001 * 109.47459 * 300.00316 * 9 8 7 32 32 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 33 33 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 34 34 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 35 35 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 36 36 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 38 38 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 39 39 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 40 40 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0933 0.0000 4 7 3.5854 0.6716 -0.0065 5 6 4.7733 1.5290 -0.0145 6 7 3.5817 -0.7292 -0.0044 7 6 2.3338 -1.1351 0.0026 8 7 1.9022 -2.4668 0.0073 9 6 2.8834 -3.5547 0.0051 10 6 2.1537 -4.8995 0.0105 11 6 1.2819 -5.0015 1.2637 12 6 1.2712 -5.0060 -1.2348 13 6 3.1783 -6.0357 0.0088 14 6 2.4596 -7.3602 0.0148 15 1 1.3800 -7.3888 0.0190 16 6 3.1803 -8.5357 0.0140 17 7 4.4950 -8.5009 0.0084 18 14 2.2894 -10.1776 0.0207 19 1 1.4331 -10.2810 -1.1881 20 1 3.2839 -11.2804 0.0192 21 1 1.4430 -10.2765 1.2369 22 1 -0.3633 0.0028 1.0277 23 1 -0.3633 0.8886 -0.5163 24 1 -0.3633 -0.8914 -0.5114 25 1 1.9721 2.1212 0.0004 26 1 5.0623 1.7398 -1.0440 27 1 4.5497 2.4643 0.4989 28 1 5.5914 1.0209 0.4959 29 1 0.9536 -2.6692 0.0121 30 1 3.5123 -3.4786 0.8921 31 1 3.5043 -3.4822 -0.8879 32 1 0.5519 -4.1920 1.2654 33 1 0.7624 -5.9597 1.2678 34 1 1.9105 -4.9257 2.1509 35 1 1.8923 -4.9332 -2.1276 36 1 0.7511 -5.9639 -1.2306 37 1 0.5412 -4.1965 -1.2331 38 1 3.7998 -5.9632 -0.8837 39 1 3.8067 -5.9596 0.8963 40 1 5.0021 -9.3278 0.0082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697711005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:50 Heat of formation + Delta-G solvation = 42.409333 kcal Electronic energy + Delta-G solvation = -18513.187797 eV Core-core repulsion = 15749.298067 eV Total energy + Delta-G solvation = -2763.889730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.95460 -39.19869 -35.92803 -34.45187 -33.20287 -31.94732 -29.12451 -28.44010 -27.95742 -27.36229 -25.58568 -24.49930 -21.52301 -20.98268 -19.56814 -18.35596 -17.87002 -16.60850 -16.43233 -16.32794 -15.94565 -15.59234 -14.68344 -14.53579 -14.34530 -14.08603 -13.96117 -13.93102 -13.89353 -13.11291 -13.10428 -12.80975 -12.74543 -12.67539 -12.57862 -12.32770 -12.19849 -11.96850 -11.58017 -11.26342 -11.00010 -10.92985 -10.83655 -10.50163 -9.41718 -8.40750 -8.13283 -6.21402 1.16083 1.42454 1.45169 1.52337 1.71092 2.12069 2.44337 2.75347 3.20662 3.81357 4.05079 4.11945 4.14550 4.25784 4.50841 4.53860 4.60348 4.71622 4.75179 4.76607 4.77022 4.94541 4.98751 5.03631 5.04141 5.12182 5.17811 5.36054 5.42830 5.48756 5.50239 5.53790 5.59812 5.81252 5.89884 6.28440 6.35106 6.43571 6.69333 6.93152 7.30468 7.46150 8.99251 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.038738 B = 0.004309 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.633650 B = 6496.460631 C = 7012.120280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.300 4.300 3 C 0.084 3.916 4 N -0.390 5.390 5 C 0.102 3.898 6 N -0.406 5.406 7 C 0.322 3.678 8 N -0.707 5.707 9 C 0.167 3.833 10 C -0.064 4.064 11 C -0.118 4.118 12 C -0.117 4.117 13 C 0.042 3.958 14 C -0.516 4.516 15 H 0.072 0.928 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.266 1.266 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.216 0.784 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.414 0.586 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.065 0.935 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 21.543 0.053 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.314 4.314 3 C -0.063 4.063 4 N -0.172 5.172 5 C -0.038 4.038 6 N -0.240 5.240 7 C 0.064 3.936 8 N -0.351 5.351 9 C 0.042 3.958 10 C -0.065 4.065 11 C -0.175 4.175 12 C -0.175 4.175 13 C 0.005 3.995 14 C -0.554 4.554 15 H 0.090 0.910 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.785 3.215 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.191 1.191 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.232 0.768 26 H 0.097 0.903 27 H 0.139 0.861 28 H 0.094 0.906 29 H 0.253 0.747 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.260 21.115 0.044 22.024 hybrid contribution -0.534 -1.145 -0.009 1.264 sum -6.794 19.970 0.035 21.094 Atomic orbital electron populations 1.19969 0.87642 1.02629 1.01723 1.20140 0.98233 0.90105 1.22949 1.22818 0.83204 1.00924 0.99335 1.48246 1.06912 1.03135 1.58926 1.22041 0.84632 0.93102 1.04002 1.77414 1.18858 0.91016 1.36701 1.19595 0.91409 0.86851 0.95733 1.43761 1.08303 0.99122 1.83932 1.20939 0.90540 0.85837 0.98515 1.20687 0.96440 0.92471 0.96858 1.21643 0.98654 1.01484 0.95696 1.21643 0.98591 1.01487 0.95752 1.18946 0.93403 0.93034 0.94140 1.21566 0.93614 0.91230 1.48962 0.91014 1.25965 0.95478 1.03353 0.95357 1.70123 1.07033 1.28351 1.52505 0.85575 0.78145 0.78593 0.79190 1.19117 1.21533 1.19122 0.92018 0.90110 0.92808 0.76769 0.90252 0.86123 0.90607 0.74691 0.95138 0.95166 0.91615 0.92556 0.94678 0.94677 0.92553 0.91626 0.99761 0.99752 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.21 71.24 0.73 -0.38 16 2 C -0.30 -7.47 6.12 -20.02 -0.12 -7.59 16 3 C 0.08 1.70 11.39 83.52 0.95 2.65 16 4 N -0.39 -9.77 4.01 -369.61 -1.48 -11.25 16 5 C 0.10 1.53 11.47 127.77 1.47 2.99 16 6 N -0.41 -14.38 12.24 -54.55 -0.67 -15.05 16 7 C 0.32 10.63 7.87 133.39 1.05 11.68 16 8 N -0.71 -23.34 5.17 -343.93 -1.78 -25.12 16 9 C 0.17 6.63 4.93 86.38 0.43 7.05 16 10 C -0.06 -2.64 0.54 -52.18 -0.03 -2.67 16 11 C -0.12 -4.35 8.05 71.98 0.58 -3.78 16 12 C -0.12 -4.35 8.05 71.98 0.58 -3.77 16 13 C 0.04 2.27 4.04 29.85 0.12 2.39 16 14 C -0.52 -28.65 7.65 25.60 0.20 -28.45 16 15 H 0.07 3.73 5.68 -2.91 -0.02 3.72 16 16 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 17 N -0.94 -58.36 13.29 21.45 0.28 -58.08 16 18 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 0.99 7.70 -2.39 -0.02 0.97 16 25 H 0.22 2.02 8.06 -2.91 -0.02 1.99 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.41 11.78 5.68 -92.71 -0.53 11.25 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.96 6.86 -2.39 -0.02 1.94 16 33 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 37 H 0.06 1.95 6.86 -2.39 -0.02 1.94 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -73.66 323.28 5.28 -68.38 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.49 Total: 14.27 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 6.41 Total: -19.68 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -3.64 Total: -109.49 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -73.66 5.28 -68.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697711005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.789 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds