Wall clock time and date at job start Mon Mar 30 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47137 * 2 1 4 4 C 1.50701 * 109.47421 * 239.99456 * 2 1 3 5 5 O 1.21275 * 119.99800 * 244.89449 * 4 2 1 6 6 N 1.34775 * 119.99770 * 64.88678 * 4 2 1 7 7 C 1.46503 * 119.99816 * 184.21619 * 6 4 2 8 8 C 1.50697 * 109.46889 * 90.00222 * 7 6 4 9 9 H 1.07998 * 120.00182 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99915 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00106 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99869 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47252 * 89.99626 * 12 10 8 14 14 H 1.48502 * 109.46920 * 210.00032 * 12 10 8 15 15 H 1.48499 * 109.47012 * 329.99780 * 12 10 8 16 16 C 1.46502 * 120.00122 * 4.22320 * 6 4 2 17 17 C 1.52995 * 117.49744 * 186.34765 * 16 6 4 18 18 C 1.53001 * 117.50033 * 117.68536 * 16 6 4 19 19 C 1.53003 * 109.46949 * 119.99594 * 2 1 3 20 20 C 1.53779 * 113.61774 * 180.02562 * 19 2 1 21 21 C 1.53779 * 87.08072 * 139.97991 * 20 19 2 22 22 C 1.53775 * 87.08443 * 334.56874 * 21 20 19 23 23 H 1.09000 * 109.47418 * 187.56771 * 1 2 3 24 24 H 1.08997 * 109.47445 * 307.57609 * 1 2 3 25 25 H 1.09003 * 109.46788 * 67.57107 * 1 2 3 26 26 H 1.09002 * 109.46812 * 210.00497 * 7 6 4 27 27 H 1.08995 * 109.47208 * 330.00601 * 7 6 4 28 28 H 0.96995 * 120.00115 * 180.02562 * 11 10 8 29 29 H 1.08999 * 115.54945 * 332.00919 * 16 6 4 30 30 H 1.09000 * 117.50025 * 359.97438 * 17 16 6 31 31 H 1.09000 * 117.50132 * 145.02164 * 17 16 6 32 32 H 1.08994 * 117.49484 * 214.97810 * 18 16 6 33 33 H 1.09003 * 117.49651 * 359.97438 * 18 16 6 34 34 H 1.09001 * 112.90595 * 48.74358 * 19 2 1 35 35 H 1.09008 * 113.60746 * 25.43229 * 20 19 2 36 36 H 1.08996 * 113.61419 * 254.53370 * 20 19 2 37 37 H 1.08997 * 113.61427 * 89.11874 * 21 20 19 38 38 H 1.09007 * 113.61507 * 220.01970 * 21 20 19 39 39 H 1.09004 * 113.61826 * 139.97940 * 22 21 20 40 40 H 1.09002 * 113.61654 * 270.79881 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.6547 -1.7457 -1.1212 6 7 1.7900 -0.1956 -2.4521 7 6 2.1971 -0.9320 -3.6513 8 6 1.0760 -1.8392 -4.0884 9 1 0.1524 -1.8644 -3.5291 10 6 1.2289 -2.6364 -5.2029 11 7 0.2503 -3.4278 -5.5847 12 14 2.8260 -2.5923 -6.1707 13 1 3.7644 -3.6050 -5.6238 14 1 2.5484 -2.8944 -7.5979 15 1 3.4349 -1.2424 -6.0598 16 6 1.1196 1.1007 -2.5808 17 6 0.7394 1.5626 -3.9889 18 6 1.8983 2.2355 -3.2491 19 6 2.0399 -0.7212 1.2493 20 6 3.5737 -0.7762 1.3460 21 6 3.4101 -0.5048 2.8508 22 6 2.0713 0.1675 2.5040 23 1 -0.3634 -1.0187 0.1353 24 1 -0.3634 0.6267 0.8144 25 1 -0.3633 0.3921 -0.9500 26 1 2.4265 -0.2269 -4.4503 27 1 3.0815 -1.5288 -3.4284 28 1 0.3580 -3.9888 -6.3685 29 1 0.4458 1.3645 -1.7656 30 1 0.9885 0.9023 -4.8196 31 1 -0.1841 2.1307 -4.1001 32 1 1.7365 3.2460 -2.8737 33 1 2.9096 2.0178 -3.5925 34 1 1.5571 -1.6852 1.4095 35 1 4.0742 0.0295 0.8088 36 1 3.9903 -1.7583 1.1221 37 1 3.3023 -1.4099 3.4485 38 1 4.1530 0.1836 3.2536 39 1 1.2750 -0.0526 3.2150 40 1 2.1608 1.2315 2.2849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701434996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:03 Heat of formation + Delta-G solvation = 11.816999 kcal Electronic energy + Delta-G solvation = -19391.147189 eV Core-core repulsion = 16593.638125 eV Total energy + Delta-G solvation = -2797.509064 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98478 -38.22723 -36.60769 -33.22471 -32.91694 -31.79369 -28.00798 -25.86713 -25.24762 -23.38437 -22.42466 -21.94483 -20.90346 -19.33178 -18.21769 -16.87807 -16.76842 -15.73272 -15.21536 -14.73926 -14.47362 -14.13421 -13.94874 -13.55960 -12.84716 -12.50343 -12.30382 -12.26013 -12.09831 -11.77429 -11.53950 -11.47194 -11.10026 -10.98774 -10.86266 -10.68753 -10.48784 -10.35036 -10.16033 -10.09407 -9.99025 -9.84742 -9.47055 -8.76314 -8.57925 -7.53752 -6.07715 -4.05711 3.28550 3.34320 3.34610 3.36969 3.76185 4.32509 4.39853 4.66084 4.77642 4.81304 5.00918 5.14552 5.23046 5.25233 5.28491 5.36623 5.40435 5.57307 5.59020 5.79838 5.85207 5.88925 5.92542 5.94718 6.01376 6.03830 6.18909 6.31073 6.36098 6.44963 6.47749 6.59483 6.69791 6.77180 6.98234 7.38070 7.62196 8.31736 8.49437 8.95935 9.04989 9.52978 11.05681 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.006845 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.159944 B = 4089.812440 C = 4561.885938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.518 3.482 5 O -0.535 6.535 6 N -0.567 5.567 7 C 0.213 3.787 8 C -0.522 4.522 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.873 3.127 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.267 1.267 16 C 0.069 3.931 17 C -0.174 4.174 18 C -0.207 4.207 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.146 4.146 22 C -0.136 4.136 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 11.997 11.772 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 H 0.106 0.894 4 C 0.306 3.694 5 O -0.412 6.412 6 N -0.297 5.297 7 C 0.093 3.907 8 C -0.561 4.561 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.536 5.536 12 Si 0.700 3.300 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.192 1.192 16 C -0.037 4.037 17 C -0.211 4.211 18 C -0.245 4.245 19 C -0.104 4.104 20 C -0.162 4.162 21 C -0.183 4.183 22 C -0.173 4.173 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.709 11.271 11.673 16.451 hybrid contribution 0.654 -0.058 -0.788 1.026 sum 3.364 11.213 10.885 15.985 Atomic orbital electron populations 1.21947 0.93362 1.02998 1.02432 1.21325 0.97281 1.00043 0.93532 0.89391 1.20283 0.79880 0.85211 0.84046 1.90643 1.40614 1.23788 1.86161 1.47400 1.57171 1.18219 1.06929 1.19656 0.97048 0.91811 0.82226 1.21297 1.01086 1.22137 1.11540 0.90700 1.24838 0.96244 0.94825 0.97048 1.69891 1.32027 1.25793 1.25881 0.86907 0.84509 0.79135 0.79494 1.19937 1.21055 1.19164 1.21879 0.99432 0.84441 0.97960 1.23319 0.98481 1.02909 0.96409 1.23431 0.97682 0.97230 1.06203 1.22315 0.96810 0.98869 0.92415 1.22792 0.96184 1.02465 0.94754 1.22848 0.97541 1.00498 0.97427 1.22978 0.97622 0.99102 0.97619 0.91911 0.92071 0.91108 0.95316 0.94575 0.92612 0.85322 0.86750 0.88655 0.88842 0.89033 0.88941 0.90843 0.90913 0.90488 0.91951 0.91789 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.75 37.16 0.33 -1.71 16 2 C -0.10 -1.50 1.68 -91.77 -0.15 -1.66 16 3 H 0.09 1.15 7.68 -51.93 -0.40 0.75 16 4 C 0.52 10.62 6.75 -10.99 -0.07 10.55 16 5 O -0.54 -13.05 14.60 5.56 0.08 -12.96 16 6 N -0.57 -11.82 2.79 -167.47 -0.47 -12.29 16 7 C 0.21 5.25 3.59 -5.19 -0.02 5.23 16 8 C -0.52 -14.95 9.85 -34.44 -0.34 -15.28 16 9 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 12 Si 0.87 21.73 27.47 -169.99 -4.67 17.07 16 13 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 16 C 0.07 1.12 5.31 -67.93 -0.36 0.76 16 17 C -0.17 -2.79 9.72 -26.69 -0.26 -3.05 16 18 C -0.21 -2.92 10.22 -26.69 -0.27 -3.19 16 19 C -0.09 -1.20 2.67 -89.80 -0.24 -1.44 16 20 C -0.12 -1.77 6.30 -25.92 -0.16 -1.93 16 21 C -0.15 -1.62 8.08 -25.92 -0.21 -1.83 16 22 C -0.14 -1.47 7.63 -25.92 -0.20 -1.67 16 23 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.99 5.12 -51.93 -0.27 0.73 16 26 H 0.03 0.68 5.34 -51.93 -0.28 0.41 16 27 H 0.04 0.96 6.80 -51.93 -0.35 0.61 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.13 1.78 4.68 -51.93 -0.24 1.53 16 30 H 0.11 2.20 6.29 -51.93 -0.33 1.87 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.04 8.10 -51.92 -0.42 0.62 16 36 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.77 7.97 -51.93 -0.41 0.36 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -32.55 315.22 -8.10 -40.65 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.51 Total: 2.89 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.06 Total: -13.20 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.31 Total: -39.19 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.55 -8.10 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701434996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.471 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds