Wall clock time and date at job start Mon Mar 30 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47137 * 2 1 4 4 C 1.50701 * 109.47421 * 239.99456 * 2 1 3 5 5 O 1.21275 * 119.99800 * 244.89449 * 4 2 1 6 6 N 1.34775 * 119.99770 * 64.88678 * 4 2 1 7 7 C 1.46503 * 119.99816 * 184.21619 * 6 4 2 8 8 C 1.50697 * 109.46889 * 90.00222 * 7 6 4 9 9 H 1.07998 * 120.00182 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99915 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00106 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99869 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47252 * 89.99626 * 12 10 8 14 14 H 1.48502 * 109.46920 * 210.00032 * 12 10 8 15 15 H 1.48499 * 109.47012 * 329.99780 * 12 10 8 16 16 C 1.46502 * 120.00122 * 4.22320 * 6 4 2 17 17 C 1.52995 * 117.49744 * 186.34765 * 16 6 4 18 18 C 1.53001 * 117.50033 * 117.68536 * 16 6 4 19 19 C 1.53003 * 109.46949 * 119.99594 * 2 1 3 20 20 C 1.53779 * 113.61774 * 180.02562 * 19 2 1 21 21 C 1.53779 * 87.08072 * 139.97991 * 20 19 2 22 22 C 1.53775 * 87.08443 * 334.56874 * 21 20 19 23 23 H 1.09000 * 109.47418 * 187.56771 * 1 2 3 24 24 H 1.08997 * 109.47445 * 307.57609 * 1 2 3 25 25 H 1.09003 * 109.46788 * 67.57107 * 1 2 3 26 26 H 1.09002 * 109.46812 * 210.00497 * 7 6 4 27 27 H 1.08995 * 109.47208 * 330.00601 * 7 6 4 28 28 H 0.96995 * 120.00115 * 180.02562 * 11 10 8 29 29 H 1.08999 * 115.54945 * 332.00919 * 16 6 4 30 30 H 1.09000 * 117.50025 * 359.97438 * 17 16 6 31 31 H 1.09000 * 117.50132 * 145.02164 * 17 16 6 32 32 H 1.08994 * 117.49484 * 214.97810 * 18 16 6 33 33 H 1.09003 * 117.49651 * 359.97438 * 18 16 6 34 34 H 1.09001 * 112.90595 * 48.74358 * 19 2 1 35 35 H 1.09008 * 113.60746 * 25.43229 * 20 19 2 36 36 H 1.08996 * 113.61419 * 254.53370 * 20 19 2 37 37 H 1.08997 * 113.61427 * 89.11874 * 21 20 19 38 38 H 1.09007 * 113.61507 * 220.01970 * 21 20 19 39 39 H 1.09004 * 113.61826 * 139.97940 * 22 21 20 40 40 H 1.09002 * 113.61654 * 270.79881 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.6547 -1.7457 -1.1212 6 7 1.7900 -0.1956 -2.4521 7 6 2.1971 -0.9320 -3.6513 8 6 1.0760 -1.8392 -4.0884 9 1 0.1524 -1.8644 -3.5291 10 6 1.2289 -2.6364 -5.2029 11 7 0.2503 -3.4278 -5.5847 12 14 2.8260 -2.5923 -6.1707 13 1 3.7644 -3.6050 -5.6238 14 1 2.5484 -2.8944 -7.5979 15 1 3.4349 -1.2424 -6.0598 16 6 1.1196 1.1007 -2.5808 17 6 0.7394 1.5626 -3.9889 18 6 1.8983 2.2355 -3.2491 19 6 2.0399 -0.7212 1.2493 20 6 3.5737 -0.7762 1.3460 21 6 3.4101 -0.5048 2.8508 22 6 2.0713 0.1675 2.5040 23 1 -0.3634 -1.0187 0.1353 24 1 -0.3634 0.6267 0.8144 25 1 -0.3633 0.3921 -0.9500 26 1 2.4265 -0.2269 -4.4503 27 1 3.0815 -1.5288 -3.4284 28 1 0.3580 -3.9888 -6.3685 29 1 0.4458 1.3645 -1.7656 30 1 0.9885 0.9023 -4.8196 31 1 -0.1841 2.1307 -4.1001 32 1 1.7365 3.2460 -2.8737 33 1 2.9096 2.0178 -3.5925 34 1 1.5571 -1.6852 1.4095 35 1 4.0742 0.0295 0.8088 36 1 3.9903 -1.7583 1.1221 37 1 3.3023 -1.4099 3.4485 38 1 4.1530 0.1836 3.2536 39 1 1.2750 -0.0526 3.2150 40 1 2.1608 1.2315 2.2849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701434996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:03 Heat of formation + Delta-G solvation = -8.344973 kcal Electronic energy + Delta-G solvation = -19392.021478 eV Core-core repulsion = 16593.638125 eV Total energy + Delta-G solvation = -2798.383353 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38938 -39.42767 -38.06578 -35.22834 -34.24517 -33.57008 -29.97687 -26.92203 -26.25356 -25.12937 -23.91819 -23.13492 -22.30569 -20.39457 -19.71915 -19.09227 -18.18425 -17.25915 -16.41224 -16.34574 -15.97629 -15.55412 -15.35311 -15.01520 -14.66290 -13.97974 -13.66375 -13.53530 -13.33667 -13.20536 -13.15561 -12.67288 -12.55555 -12.46729 -12.32772 -12.16929 -12.13828 -11.84501 -11.58162 -11.38574 -11.31993 -11.18023 -10.91226 -10.85661 -10.32290 -9.19162 -8.36316 -6.39920 1.26643 1.30637 1.38537 1.79312 2.24283 2.26797 2.97201 3.06779 3.48778 3.74576 3.79985 3.91582 3.99503 4.01248 4.12464 4.20716 4.33840 4.42718 4.47643 4.67929 4.79256 4.85433 4.87676 4.89963 4.93087 4.95781 4.99660 5.07718 5.14822 5.18770 5.24619 5.34908 5.37844 5.42724 5.47110 5.62887 5.67176 6.23372 6.60766 6.75180 7.20259 7.45981 8.80619 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.006845 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.159944 B = 4089.812440 C = 4561.885938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.121 0.879 4 C 0.504 3.496 5 O -0.589 6.589 6 N -0.577 5.577 7 C 0.225 3.775 8 C -0.524 4.524 9 H 0.029 0.971 10 C 0.014 3.986 11 N -0.943 5.943 12 Si 0.940 3.060 13 H -0.278 1.278 14 H -0.272 1.272 15 H -0.243 1.243 16 C 0.045 3.955 17 C -0.188 4.188 18 C -0.173 4.173 19 C -0.097 4.097 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.115 4.115 23 H 0.037 0.963 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.012 0.988 28 H 0.268 0.732 29 H 0.161 0.839 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 15.482 13.088 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.139 0.861 4 C 0.294 3.706 5 O -0.469 6.469 6 N -0.306 5.306 7 C 0.103 3.897 8 C -0.563 4.563 9 H 0.048 0.952 10 C -0.184 4.184 11 N -0.583 5.583 12 Si 0.764 3.236 13 H -0.204 1.204 14 H -0.197 1.197 15 H -0.167 1.167 16 C -0.059 4.059 17 C -0.226 4.226 18 C -0.212 4.212 19 C -0.116 4.116 20 C -0.173 4.173 21 C -0.172 4.172 22 C -0.152 4.152 23 H 0.056 0.944 24 H 0.122 0.878 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.177 0.823 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.222 14.809 12.998 19.966 hybrid contribution 0.421 -1.190 -1.193 1.736 sum 3.642 13.620 11.806 18.388 Atomic orbital electron populations 1.21950 0.92079 1.02444 1.03836 1.21368 0.98071 1.00805 0.90585 0.86124 1.21459 0.78839 0.84878 0.85434 1.90609 1.42977 1.26305 1.87034 1.47488 1.57456 1.19724 1.05886 1.19233 0.94501 0.91586 0.84403 1.21446 1.00599 1.23127 1.11085 0.95217 1.25760 1.00065 0.94297 0.98290 1.70034 1.34472 1.26972 1.26835 0.85824 0.79564 0.80123 0.78133 1.20353 1.19659 1.16687 1.22379 1.01038 0.83157 0.99307 1.23325 1.01000 1.03398 0.94881 1.23500 0.96130 0.98186 1.03349 1.22373 0.96351 0.98940 0.93956 1.22828 0.96245 1.00610 0.97665 1.22813 0.98469 1.01123 0.94840 1.22920 0.97588 0.99421 0.95238 0.94365 0.87769 0.91578 0.93868 0.96965 0.92296 0.82251 0.90589 0.85907 0.84410 0.90187 0.91350 0.90885 0.94378 0.90341 0.89982 0.90110 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.75 71.98 0.63 -3.03 16 2 C -0.09 -2.47 1.68 -11.54 -0.02 -2.49 16 3 H 0.12 2.66 7.68 -2.39 -0.02 2.64 16 4 C 0.50 21.03 6.75 87.66 0.59 21.62 16 5 O -0.59 -30.28 14.60 -3.02 -0.04 -30.33 16 6 N -0.58 -24.21 2.79 -802.16 -2.24 -26.45 16 7 C 0.23 11.39 3.59 85.63 0.31 11.70 16 8 C -0.52 -31.41 9.85 25.60 0.25 -31.16 16 9 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 10 C 0.01 0.84 5.47 84.66 0.46 1.30 16 11 N -0.94 -60.37 13.96 21.45 0.30 -60.08 16 12 Si 0.94 45.75 27.47 68.60 1.88 47.63 16 13 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 15 H -0.24 -10.81 6.54 99.48 0.65 -10.16 16 16 C 0.04 1.38 5.31 44.99 0.24 1.62 16 17 C -0.19 -5.73 9.72 30.62 0.30 -5.43 16 18 C -0.17 -4.27 10.22 30.62 0.31 -3.96 16 19 C -0.10 -2.65 2.67 -10.27 -0.03 -2.68 16 20 C -0.14 -3.83 6.30 31.12 0.20 -3.64 16 21 C -0.14 -2.68 8.08 31.12 0.25 -2.43 16 22 C -0.11 -2.05 7.63 31.12 0.24 -1.81 16 23 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.72 5.12 -2.39 -0.01 1.71 16 26 H 0.04 2.06 5.34 -2.39 -0.01 2.05 16 27 H 0.01 0.68 6.80 -2.39 -0.02 0.66 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.16 3.86 4.68 -2.39 -0.01 3.84 16 30 H 0.08 2.93 6.29 -2.39 -0.02 2.91 16 31 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.02 8.10 -2.38 -0.02 2.00 16 36 H 0.04 1.30 8.02 -2.39 -0.02 1.28 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.10 1.41 7.97 -2.39 -0.02 1.39 16 Total: -1.00 -77.11 315.22 4.59 -72.52 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.95 Total: 17.09 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 3.73 Total: -20.40 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.94 Total: -86.52 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.04 Total: -30.33 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -77.11 4.59 -72.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701434996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.176 kcal (2) G-P(sol) polarization free energy of solvation -77.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds