Wall clock time and date at job start Mon Mar 30 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.28116 * 2 1 4 4 C 1.54476 * 110.24438 * 238.02086 * 2 1 3 5 5 H 1.09001 * 110.96660 * 148.25983 * 4 2 1 6 6 C 1.50693 * 110.97137 * 24.53565 * 4 2 1 7 7 H 1.08003 * 119.99928 * 275.11380 * 6 4 2 8 8 C 1.37880 * 120.00067 * 95.12045 * 6 4 2 9 9 N 1.31516 * 119.99876 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99927 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47161 * 179.97438 * 10 8 6 12 12 H 1.48498 * 109.47313 * 300.00032 * 10 8 6 13 13 H 1.48502 * 109.47221 * 59.99977 * 10 8 6 14 14 C 1.54631 * 101.76580 * 266.41500 * 4 2 1 15 15 C 1.51290 * 104.19547 * 335.20463 * 14 4 2 16 16 O 1.21279 * 124.94209 * 196.25151 * 15 14 4 17 17 N 1.34420 * 110.11329 * 16.24945 * 15 14 4 18 18 C 1.46502 * 124.34954 * 180.42271 * 17 15 14 19 19 C 1.53005 * 109.46603 * 59.97978 * 18 17 15 20 20 C 1.53001 * 109.47086 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46749 * 60.00178 * 20 19 18 22 22 C 1.52996 * 109.47249 * 299.99857 * 21 20 19 23 23 C 1.52996 * 109.47244 * 299.98590 * 18 17 15 24 24 H 1.09005 * 109.46998 * 176.94979 * 1 2 3 25 25 H 1.08999 * 109.47487 * 296.95366 * 1 2 3 26 26 H 1.09000 * 109.47317 * 56.95377 * 1 2 3 27 27 H 0.96999 * 119.99768 * 180.02562 * 9 8 6 28 28 H 1.08996 * 110.48511 * 93.88267 * 14 4 2 29 29 H 1.09005 * 110.48703 * 216.52884 * 14 4 2 30 30 H 1.08996 * 109.47226 * 179.97438 * 18 17 15 31 31 H 1.08999 * 109.47246 * 300.00464 * 19 18 17 32 32 H 1.09004 * 109.46636 * 59.99937 * 19 18 17 33 33 H 1.09001 * 109.46903 * 300.00629 * 20 19 18 34 34 H 1.08998 * 109.46697 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.46876 * 180.02562 * 21 20 19 36 36 H 1.08996 * 109.47242 * 60.00142 * 21 20 19 37 37 H 1.09001 * 109.47653 * 300.00314 * 22 21 20 38 38 H 1.09000 * 109.47354 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46777 * 299.99385 * 23 18 17 40 40 H 1.08996 * 109.47498 * 59.99568 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0645 -0.7676 -1.2294 5 1 3.0117 -0.3486 -1.5693 6 6 1.0502 -0.7745 -2.3438 7 1 0.2713 -1.5226 -2.3604 8 6 1.1165 0.1740 -3.3423 9 7 2.0647 1.0851 -3.3218 10 14 -0.1405 0.1650 -4.7240 11 1 0.1477 1.2790 -5.6627 12 1 -0.0671 -1.1275 -5.4516 13 1 -1.5018 0.3365 -4.1560 14 6 2.2625 -2.1885 -0.6524 15 6 2.4508 -1.9633 0.8318 16 8 2.9079 -2.7778 1.6054 17 7 2.0379 -0.7291 1.1681 18 6 2.0886 -0.1820 2.5262 19 6 3.5381 -0.1660 3.0157 20 6 3.5913 0.4060 4.4338 21 6 2.7474 -0.4648 5.3668 22 6 1.2980 -0.4807 4.8773 23 6 1.2449 -1.0532 3.4589 24 1 -0.3633 -1.0263 -0.0547 25 1 -0.3634 0.4658 0.9160 26 1 -0.3634 0.5604 -0.8614 27 1 2.1111 1.7526 -4.0240 28 1 1.3800 -2.8012 -0.8363 29 1 3.1486 -2.6551 -1.0829 30 1 1.6949 0.8344 2.5233 31 1 3.9319 -1.1824 3.0184 32 1 4.1392 0.4547 2.3511 33 1 3.1976 1.4224 4.4305 34 1 4.6240 0.4177 4.7823 35 1 2.7849 -0.0570 6.3770 36 1 3.1410 -1.4812 5.3700 37 1 0.9042 0.5357 4.8740 38 1 0.6967 -1.1007 5.5422 39 1 0.2123 -1.0646 3.1101 40 1 1.6387 -2.0696 3.4617 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710002790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:13 Heat of formation + Delta-G solvation = -65.904804 kcal Electronic energy + Delta-G solvation = -19627.438737 eV Core-core repulsion = 16826.559403 eV Total energy + Delta-G solvation = -2800.879334 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05918 -37.60320 -35.97585 -33.20056 -31.53419 -30.60632 -29.19963 -28.39302 -25.32706 -23.39139 -22.41552 -22.38286 -20.32652 -19.33616 -18.23223 -16.36093 -16.22955 -14.99362 -14.74872 -14.65412 -14.28001 -14.02140 -13.70025 -13.35460 -12.95272 -12.69656 -12.36944 -12.29920 -12.04090 -11.68641 -11.62910 -11.19790 -11.11799 -10.98037 -10.90027 -10.75788 -10.59595 -10.46150 -10.12884 -10.05516 -9.78178 -9.71350 -9.12575 -8.70273 -8.56024 -7.88898 -6.18151 -4.20716 3.23768 3.30148 3.32322 3.40777 3.74339 4.31616 4.82752 4.91676 5.04852 5.12270 5.23516 5.40570 5.56502 5.63549 5.65575 5.68187 5.74463 5.83898 5.96436 6.09828 6.12984 6.16955 6.22129 6.28009 6.35114 6.40254 6.43600 6.48202 6.58234 6.62188 6.67608 6.79220 7.16646 7.21950 7.49871 7.58574 7.77258 7.97996 8.23911 8.84806 9.03166 9.42772 10.91322 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.037541 B = 0.005817 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.667079 B = 4812.358031 C = 4930.010691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.127 3.873 3 H 0.068 0.932 4 C 0.044 3.956 5 H 0.069 0.931 6 C -0.505 4.505 7 H 0.060 0.940 8 C 0.067 3.933 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.287 1.287 12 H -0.275 1.275 13 H -0.275 1.275 14 C -0.152 4.152 15 C 0.517 3.483 16 O -0.564 6.564 17 N -0.611 5.611 18 C 0.161 3.839 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.133 4.133 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.076 0.924 27 H 0.264 0.736 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 0.587 11.530 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.024 3.976 3 H 0.086 0.914 4 C 0.025 3.975 5 H 0.087 0.913 6 C -0.543 4.543 7 H 0.078 0.922 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.719 3.281 11 H -0.213 1.213 12 H -0.201 1.201 13 H -0.201 1.201 14 C -0.192 4.192 15 C 0.307 3.693 16 O -0.444 6.444 17 N -0.343 5.343 18 C 0.058 3.942 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.171 4.171 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.486 0.385 11.868 11.885 hybrid contribution -0.733 0.227 -0.830 1.130 sum -1.219 0.613 11.038 11.122 Atomic orbital electron populations 1.21840 0.95550 1.01408 0.99706 1.22271 0.94114 0.96364 0.84841 0.91433 1.19806 0.98947 0.87877 0.90871 0.91319 1.20872 1.12656 1.13973 1.06801 0.92171 1.25008 0.95502 0.95347 0.97726 1.69914 1.32163 1.16371 1.34068 0.86653 0.81751 0.77752 0.81897 1.21274 1.20073 1.20067 1.22568 1.02868 1.02546 0.91241 1.21314 0.75422 0.81043 0.91524 1.90563 1.47309 1.48443 1.58109 1.48752 1.61857 1.15680 1.08005 1.20799 0.95200 0.96938 0.81259 1.21930 0.96754 1.02749 0.95793 1.21476 0.99692 0.99007 0.94965 1.21546 0.95513 1.00450 0.98218 1.21487 0.96565 1.00865 0.96239 1.21938 0.99927 1.01069 0.94188 0.93417 0.95789 0.90543 0.92586 0.89257 0.90150 0.90323 0.90401 0.91961 0.92176 0.92090 0.92390 0.91877 0.92196 0.92151 0.92086 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.51 37.16 0.32 -2.14 16 2 C 0.13 2.61 3.57 -67.01 -0.24 2.37 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.04 1.01 3.06 -90.14 -0.28 0.74 16 5 H 0.07 1.76 7.49 -51.93 -0.39 1.37 16 6 C -0.51 -12.40 6.23 -34.44 -0.21 -12.62 16 7 H 0.06 1.46 7.66 -52.48 -0.40 1.06 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.77 12.89 55.43 0.71 -23.05 16 10 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 C -0.15 -3.20 6.41 -26.74 -0.17 -3.37 16 15 C 0.52 10.86 7.41 -10.86 -0.08 10.78 16 16 O -0.56 -12.77 15.12 5.56 0.08 -12.69 16 17 N -0.61 -11.69 2.47 -157.37 -0.39 -12.08 16 18 C 0.16 2.62 2.74 -67.93 -0.19 2.43 16 19 C -0.13 -2.06 5.21 -26.73 -0.14 -2.20 16 20 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 21 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 22 C -0.11 -1.36 5.92 -26.71 -0.16 -1.51 16 23 C -0.13 -2.00 5.21 -26.71 -0.14 -2.14 16 24 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 1.59 7.30 -51.93 -0.38 1.21 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.09 1.84 7.78 -51.93 -0.40 1.43 16 29 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.08 1.37 6.80 -51.93 -0.35 1.02 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.36 6.77 -51.93 -0.35 1.00 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -26.66 310.72 -8.53 -35.19 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.90 Total: 2.28 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.70 Total: -9.11 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.33 Total: -35.13 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.66 -8.53 -35.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.711 kcal (2) G-P(sol) polarization free energy of solvation -26.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds