Wall clock time and date at job start Mon Mar 30 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.28116 * 2 1 4 4 C 1.54476 * 110.24438 * 238.02086 * 2 1 3 5 5 H 1.09001 * 110.96660 * 148.25983 * 4 2 1 6 6 C 1.50693 * 110.97137 * 24.53565 * 4 2 1 7 7 H 1.08003 * 119.99928 * 275.11380 * 6 4 2 8 8 C 1.37880 * 120.00067 * 95.12045 * 6 4 2 9 9 N 1.31516 * 119.99876 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99927 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47161 * 179.97438 * 10 8 6 12 12 H 1.48498 * 109.47313 * 300.00032 * 10 8 6 13 13 H 1.48502 * 109.47221 * 59.99977 * 10 8 6 14 14 C 1.54631 * 101.76580 * 266.41500 * 4 2 1 15 15 C 1.51290 * 104.19547 * 335.20463 * 14 4 2 16 16 O 1.21279 * 124.94209 * 196.25151 * 15 14 4 17 17 N 1.34420 * 110.11329 * 16.24945 * 15 14 4 18 18 C 1.46502 * 124.34954 * 180.42271 * 17 15 14 19 19 C 1.53005 * 109.46603 * 59.97978 * 18 17 15 20 20 C 1.53001 * 109.47086 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46749 * 60.00178 * 20 19 18 22 22 C 1.52996 * 109.47249 * 299.99857 * 21 20 19 23 23 C 1.52996 * 109.47244 * 299.98590 * 18 17 15 24 24 H 1.09005 * 109.46998 * 176.94979 * 1 2 3 25 25 H 1.08999 * 109.47487 * 296.95366 * 1 2 3 26 26 H 1.09000 * 109.47317 * 56.95377 * 1 2 3 27 27 H 0.96999 * 119.99768 * 180.02562 * 9 8 6 28 28 H 1.08996 * 110.48511 * 93.88267 * 14 4 2 29 29 H 1.09005 * 110.48703 * 216.52884 * 14 4 2 30 30 H 1.08996 * 109.47226 * 179.97438 * 18 17 15 31 31 H 1.08999 * 109.47246 * 300.00464 * 19 18 17 32 32 H 1.09004 * 109.46636 * 59.99937 * 19 18 17 33 33 H 1.09001 * 109.46903 * 300.00629 * 20 19 18 34 34 H 1.08998 * 109.46697 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.46876 * 180.02562 * 21 20 19 36 36 H 1.08996 * 109.47242 * 60.00142 * 21 20 19 37 37 H 1.09001 * 109.47653 * 300.00314 * 22 21 20 38 38 H 1.09000 * 109.47354 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46777 * 299.99385 * 23 18 17 40 40 H 1.08996 * 109.47498 * 59.99568 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0645 -0.7676 -1.2294 5 1 3.0117 -0.3486 -1.5693 6 6 1.0502 -0.7745 -2.3438 7 1 0.2713 -1.5226 -2.3604 8 6 1.1165 0.1740 -3.3423 9 7 2.0647 1.0851 -3.3218 10 14 -0.1405 0.1650 -4.7240 11 1 0.1477 1.2790 -5.6627 12 1 -0.0671 -1.1275 -5.4516 13 1 -1.5018 0.3365 -4.1560 14 6 2.2625 -2.1885 -0.6524 15 6 2.4508 -1.9633 0.8318 16 8 2.9079 -2.7778 1.6054 17 7 2.0379 -0.7291 1.1681 18 6 2.0886 -0.1820 2.5262 19 6 3.5381 -0.1660 3.0157 20 6 3.5913 0.4060 4.4338 21 6 2.7474 -0.4648 5.3668 22 6 1.2980 -0.4807 4.8773 23 6 1.2449 -1.0532 3.4589 24 1 -0.3633 -1.0263 -0.0547 25 1 -0.3634 0.4658 0.9160 26 1 -0.3634 0.5604 -0.8614 27 1 2.1111 1.7526 -4.0240 28 1 1.3800 -2.8012 -0.8363 29 1 3.1486 -2.6551 -1.0829 30 1 1.6949 0.8344 2.5233 31 1 3.9319 -1.1824 3.0184 32 1 4.1392 0.4547 2.3511 33 1 3.1976 1.4224 4.4305 34 1 4.6240 0.4177 4.7823 35 1 2.7849 -0.0570 6.3770 36 1 3.1410 -1.4812 5.3700 37 1 0.9042 0.5357 4.8740 38 1 0.6967 -1.1007 5.5422 39 1 0.2123 -1.0646 3.1101 40 1 1.6387 -2.0696 3.4617 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:13 Heat of formation + Delta-G solvation = -78.585136 kcal Electronic energy + Delta-G solvation = -19627.988598 eV Core-core repulsion = 16826.559403 eV Total energy + Delta-G solvation = -2801.429195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64409 -38.83902 -37.72867 -34.93186 -33.13265 -31.70011 -30.86826 -29.84743 -27.13757 -25.13833 -23.69161 -23.49159 -21.85546 -20.70729 -19.78429 -18.26634 -17.76376 -16.53852 -16.41733 -16.23876 -15.64028 -15.15950 -14.95203 -14.81615 -14.68671 -14.28630 -13.93555 -13.67457 -13.35299 -13.14515 -13.08503 -12.78744 -12.66351 -12.55773 -12.36425 -12.32739 -12.02721 -11.74281 -11.51240 -11.42021 -11.24574 -11.16763 -10.96207 -10.53931 -10.36008 -9.47590 -8.13135 -6.20242 1.48287 1.50131 1.56590 1.71236 2.21049 2.46377 3.18720 3.59797 3.83230 3.89930 4.01255 4.16364 4.29163 4.32057 4.38218 4.44432 4.52599 4.57067 4.60174 4.65047 4.73917 4.83986 4.90692 4.98444 5.03974 5.10754 5.18770 5.24682 5.26151 5.29089 5.39129 5.44169 5.52806 5.57420 5.63421 5.81223 5.94644 6.23651 6.40635 6.89635 7.36476 7.45960 8.96629 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.037541 B = 0.005817 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.667079 B = 4812.358031 C = 4930.010691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.135 3.865 3 H 0.059 0.941 4 C 0.040 3.960 5 H 0.035 0.965 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.023 3.977 9 N -0.922 5.922 10 Si 0.950 3.050 11 H -0.290 1.290 12 H -0.273 1.273 13 H -0.266 1.266 14 C -0.148 4.148 15 C 0.515 3.485 16 O -0.582 6.582 17 N -0.604 5.604 18 C 0.152 3.848 19 C -0.130 4.130 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.127 4.127 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.263 0.737 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 1.211 13.004 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.031 3.969 3 H 0.077 0.923 4 C 0.020 3.980 5 H 0.054 0.946 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.177 4.177 9 N -0.561 5.561 10 Si 0.776 3.224 11 H -0.216 1.216 12 H -0.199 1.199 13 H -0.191 1.191 14 C -0.188 4.188 15 C 0.304 3.696 16 O -0.464 6.464 17 N -0.335 5.335 18 C 0.050 3.950 19 C -0.168 4.168 20 C -0.146 4.146 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.165 4.165 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.753 1.012 13.361 13.514 hybrid contribution -0.291 0.010 -1.271 1.304 sum -2.045 1.022 12.090 12.304 Atomic orbital electron populations 1.21700 0.94118 1.01224 1.00369 1.22005 0.95048 0.95395 0.84403 0.92312 1.19687 0.97284 0.89192 0.91812 0.94629 1.21080 1.12581 1.13614 1.07143 0.91939 1.25660 0.97031 0.95145 0.99839 1.70032 1.33876 1.17239 1.34912 0.85733 0.79975 0.77473 0.79264 1.21551 1.19873 1.19130 1.22499 1.03235 1.01522 0.91519 1.21236 0.75548 0.81547 0.91246 1.90556 1.48327 1.49130 1.58425 1.48762 1.60903 1.14824 1.09012 1.21146 0.96276 0.97835 0.79724 1.21876 0.95738 1.01130 0.98101 1.21472 1.00868 0.99670 0.92569 1.21552 0.94874 0.99714 0.99432 1.21486 0.97265 1.01841 0.94015 1.21866 0.99089 0.99416 0.96133 0.93706 0.93186 0.92010 0.92783 0.88631 0.90050 0.88697 0.93197 0.92978 0.90502 0.90974 0.89662 0.93297 0.90457 0.90766 0.92248 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.51 71.98 0.61 -3.73 16 2 C 0.13 5.51 3.57 45.44 0.16 5.67 16 3 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 4 C 0.04 1.84 3.06 -10.48 -0.03 1.81 16 5 H 0.04 1.88 7.49 -2.39 -0.02 1.86 16 6 C -0.51 -24.89 6.23 25.60 0.16 -24.73 16 7 H 0.06 3.00 7.66 -2.91 -0.02 2.98 16 8 C 0.02 1.17 5.46 84.66 0.46 1.63 16 9 N -0.92 -50.07 12.89 21.45 0.28 -49.79 16 10 Si 0.95 40.38 29.54 68.60 2.03 42.41 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 14 C -0.15 -6.27 6.41 30.59 0.20 -6.08 16 15 C 0.51 21.78 7.41 87.90 0.65 22.43 16 16 O -0.58 -26.71 15.12 -3.03 -0.05 -26.75 16 17 N -0.60 -22.94 2.47 -770.39 -1.90 -24.84 16 18 C 0.15 4.74 2.74 44.99 0.12 4.87 16 19 C -0.13 -3.90 5.21 30.60 0.16 -3.74 16 20 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 21 C -0.12 -2.37 5.92 30.59 0.18 -2.19 16 22 C -0.11 -2.25 5.92 30.61 0.18 -2.06 16 23 C -0.13 -3.62 5.21 30.61 0.16 -3.46 16 24 H 0.04 1.68 8.07 -2.38 -0.02 1.66 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 2.50 7.30 -2.39 -0.02 2.49 16 27 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.10 3.92 7.78 -2.39 -0.02 3.90 16 29 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 30 H 0.09 2.68 8.07 -2.39 -0.02 2.66 16 31 H 0.05 1.78 6.80 -2.39 -0.02 1.76 16 32 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.71 6.77 -2.39 -0.02 1.70 16 Total: -1.00 -57.24 310.72 4.54 -52.70 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.99 Total: 18.03 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 3.20 Total: -11.74 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.63 Total: -74.63 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -57.24 4.54 -52.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.888 kcal (2) G-P(sol) polarization free energy of solvation -57.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds