Wall clock time and date at job start Mon Mar 30 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.28295 * 2 1 4 4 C 1.54307 * 110.09195 * 121.95012 * 2 1 3 5 5 H 1.08994 * 110.74372 * 211.97072 * 4 2 1 6 6 C 1.50696 * 111.11852 * 335.68385 * 4 2 1 7 7 H 1.08000 * 120.00204 * 357.71529 * 6 4 2 8 8 C 1.37881 * 119.99797 * 177.71639 * 6 4 2 9 9 N 1.31513 * 119.99825 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99853 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47211 * 60.00468 * 10 8 6 12 12 H 1.48500 * 109.46808 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47485 * 300.00001 * 10 8 6 14 14 C 1.54635 * 101.84045 * 93.91148 * 4 2 1 15 15 C 1.51285 * 104.19589 * 24.57966 * 14 4 2 16 16 O 1.21276 * 124.93935 * 163.76453 * 15 14 4 17 17 N 1.34417 * 110.11262 * 343.74788 * 15 14 4 18 18 C 1.46510 * 124.34534 * 179.58973 * 17 15 14 19 19 C 1.53005 * 109.46678 * 60.02503 * 18 17 15 20 20 C 1.52995 * 109.46804 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47338 * 60.00292 * 20 19 18 22 22 C 1.53000 * 109.46636 * 300.00215 * 21 20 19 23 23 C 1.52994 * 109.47737 * 59.99618 * 22 21 20 24 24 H 1.08999 * 109.46681 * 189.09626 * 1 2 3 25 25 H 1.09001 * 109.47239 * 309.09158 * 1 2 3 26 26 H 1.08999 * 109.47033 * 69.09768 * 1 2 3 27 27 H 0.97004 * 119.99685 * 179.97438 * 9 8 6 28 28 H 1.08998 * 110.48560 * 265.90156 * 14 4 2 29 29 H 1.09000 * 110.59443 * 143.31619 * 14 4 2 30 30 H 1.08993 * 109.47300 * 180.02562 * 18 17 15 31 31 H 1.08999 * 109.47193 * 60.00062 * 19 18 17 32 32 H 1.09002 * 109.47318 * 299.99957 * 19 18 17 33 33 H 1.09002 * 109.47318 * 300.00165 * 20 19 18 34 34 H 1.08997 * 109.47364 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.47020 * 59.99690 * 21 20 19 36 36 H 1.08995 * 109.47597 * 179.97438 * 21 20 19 37 37 H 1.09009 * 109.46885 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.46987 * 299.99495 * 22 21 20 39 39 H 1.09002 * 109.46982 * 59.99874 * 23 22 21 40 40 H 1.08997 * 109.47669 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0601 -0.7669 1.2296 5 1 3.0048 -0.3436 1.5708 6 6 1.0436 -0.7784 2.3420 7 1 0.1061 -0.2558 2.2223 8 6 1.3104 -1.4562 3.5127 9 7 2.4519 -2.0930 3.6583 10 14 0.0506 -1.4699 4.8919 11 1 -1.2116 -2.0811 4.4034 12 1 0.5751 -2.2618 6.0334 13 1 -0.2129 -0.0776 5.3356 14 6 2.2661 -2.1870 0.6534 15 6 2.4562 -1.9613 -0.8304 16 8 2.9185 -2.7738 -1.6030 17 7 2.0379 -0.7292 -1.1679 18 6 2.0883 -0.1823 -2.5262 19 6 1.2503 -1.0580 -3.4599 20 6 1.3024 -0.4866 -4.8782 21 6 2.7525 -0.4634 -5.3657 22 6 3.5905 0.4122 -4.4319 23 6 3.5384 -0.1592 -3.0136 24 1 -0.3632 -1.0148 0.1625 25 1 -0.3634 0.6480 0.7976 26 1 -0.3633 0.3666 -0.9600 27 1 2.6397 -2.5695 4.4821 28 1 1.3862 -2.8040 0.8357 29 1 3.1526 -2.6512 1.0854 30 1 1.6898 0.8321 -2.5244 31 1 0.2171 -1.0742 -3.1128 32 1 1.6489 -2.0725 -3.4616 33 1 0.9036 0.5279 -4.8761 34 1 0.7051 -1.1101 -5.5433 35 1 3.1514 -1.4778 -5.3678 36 1 2.7897 -0.0567 -6.3763 37 1 4.6238 0.4283 -4.7790 38 1 3.1917 1.4266 -4.4298 39 1 3.9373 -1.1736 -3.0157 40 1 4.1357 0.4643 -2.3485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710002791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:15 Heat of formation + Delta-G solvation = -61.764768 kcal Electronic energy + Delta-G solvation = -19620.456424 eV Core-core repulsion = 16819.756615 eV Total energy + Delta-G solvation = -2800.699809 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06644 -37.61651 -35.98664 -33.24228 -31.44849 -30.63594 -29.36383 -28.26257 -25.26708 -23.55370 -22.42200 -22.36658 -20.39488 -19.33250 -18.14023 -16.33121 -16.12813 -15.00181 -14.77374 -14.74369 -14.29528 -14.03825 -13.72066 -13.29542 -13.00277 -12.69283 -12.39687 -12.28374 -12.06572 -11.75556 -11.52396 -11.22046 -11.15158 -11.01731 -10.93548 -10.82334 -10.58526 -10.24779 -10.19905 -10.07871 -9.99676 -9.35497 -9.22584 -8.68797 -8.37224 -7.93776 -6.12123 -4.16595 3.27147 3.33280 3.34274 3.49597 3.70145 4.36166 4.80312 4.89022 5.02790 5.21386 5.22052 5.37571 5.52923 5.62916 5.64433 5.64647 5.70319 5.79166 5.86659 6.04098 6.07237 6.11802 6.16971 6.20298 6.32018 6.39237 6.46113 6.50695 6.54559 6.61729 6.74022 6.80768 7.01019 7.39084 7.43746 7.63212 7.85263 7.97176 8.24730 8.84218 9.09277 9.49266 10.97975 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.005733 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.487257 B = 4882.788465 C = 5110.131998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.129 3.871 3 H 0.064 0.936 4 C 0.052 3.948 5 H 0.043 0.957 6 C -0.521 4.521 7 H 0.071 0.929 8 C 0.066 3.934 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.130 4.130 15 C 0.514 3.486 16 O -0.562 6.562 17 N -0.615 5.615 18 C 0.163 3.837 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.134 4.134 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.263 0.737 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 5.587 -12.300 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 H 0.082 0.918 4 C 0.033 3.967 5 H 0.061 0.939 6 C -0.559 4.559 7 H 0.089 0.911 8 C -0.138 4.138 9 N -0.523 5.523 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.170 4.170 15 C 0.305 3.695 16 O -0.442 6.442 17 N -0.348 5.348 18 C 0.059 3.941 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.173 4.173 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.170 5.087 -12.616 13.653 hybrid contribution -0.655 -0.022 0.885 1.101 sum -1.825 5.065 -11.732 12.908 Atomic orbital electron populations 1.22034 0.95584 1.02799 0.99281 1.21860 0.94150 0.95561 0.85822 0.91791 1.19615 0.97427 0.89452 0.90168 0.93878 1.21130 1.02712 1.33351 0.98664 0.91144 1.25004 0.95285 0.95137 0.98326 1.69954 1.22649 1.32883 1.26825 0.86642 0.81598 0.78128 0.81562 1.20195 1.21338 1.20203 1.22407 1.03743 1.02256 0.88590 1.21766 0.74876 0.80646 0.92257 1.90552 1.46827 1.48356 1.58427 1.48647 1.62522 1.16076 1.07572 1.20775 0.95230 0.96782 0.81270 1.21935 0.99948 1.01161 0.94137 1.21477 0.96565 1.00810 0.96273 1.21551 0.95531 1.00491 0.98208 1.21474 0.99740 0.98915 0.94969 1.21932 0.96729 1.02857 0.95754 0.91977 0.91268 0.95168 0.92728 0.89310 0.89295 0.90447 0.92071 0.90318 0.92247 0.92120 0.91831 0.92376 0.92080 0.92228 0.90309 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.24 37.16 0.31 -2.15 16 2 C 0.13 2.46 3.58 -67.11 -0.24 2.22 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.05 1.20 2.89 -90.23 -0.26 0.94 16 5 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.52 -12.85 7.65 -34.44 -0.26 -13.11 16 7 H 0.07 1.66 5.38 -52.49 -0.28 1.38 16 8 C 0.07 1.69 5.36 -17.82 -0.10 1.60 16 9 N -0.89 -24.18 12.68 55.43 0.70 -23.48 16 10 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 C -0.13 -3.02 5.66 -26.74 -0.15 -3.17 16 15 C 0.51 11.23 7.41 -10.86 -0.08 11.15 16 16 O -0.56 -13.30 15.12 5.56 0.08 -13.21 16 17 N -0.62 -11.56 2.47 -157.48 -0.39 -11.95 16 18 C 0.16 2.54 2.74 -67.92 -0.19 2.36 16 19 C -0.13 -1.98 5.21 -26.73 -0.14 -2.12 16 20 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 21 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 22 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 23 C -0.13 -2.01 5.21 -26.74 -0.14 -2.15 16 24 H 0.06 1.19 7.82 -51.93 -0.41 0.79 16 25 H 0.07 1.20 6.74 -51.93 -0.35 0.85 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 2.15 7.89 -51.93 -0.41 1.74 16 29 H 0.09 2.23 8.10 -51.93 -0.42 1.80 16 30 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.38 6.78 -51.93 -0.35 1.03 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.39 6.80 -51.93 -0.35 1.04 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -27.30 308.28 -8.48 -35.78 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.78 Total: 2.02 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.73 Total: -8.89 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.31 Total: -35.42 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.30 -8.48 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.983 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds