Wall clock time and date at job start Mon Mar 30 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.28295 * 2 1 4 4 C 1.54307 * 110.09195 * 121.95012 * 2 1 3 5 5 H 1.08994 * 110.74372 * 211.97072 * 4 2 1 6 6 C 1.50696 * 111.11852 * 335.68385 * 4 2 1 7 7 H 1.08000 * 120.00204 * 357.71529 * 6 4 2 8 8 C 1.37881 * 119.99797 * 177.71639 * 6 4 2 9 9 N 1.31513 * 119.99825 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99853 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47211 * 60.00468 * 10 8 6 12 12 H 1.48500 * 109.46808 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47485 * 300.00001 * 10 8 6 14 14 C 1.54635 * 101.84045 * 93.91148 * 4 2 1 15 15 C 1.51285 * 104.19589 * 24.57966 * 14 4 2 16 16 O 1.21276 * 124.93935 * 163.76453 * 15 14 4 17 17 N 1.34417 * 110.11262 * 343.74788 * 15 14 4 18 18 C 1.46510 * 124.34534 * 179.58973 * 17 15 14 19 19 C 1.53005 * 109.46678 * 60.02503 * 18 17 15 20 20 C 1.52995 * 109.46804 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47338 * 60.00292 * 20 19 18 22 22 C 1.53000 * 109.46636 * 300.00215 * 21 20 19 23 23 C 1.52994 * 109.47737 * 59.99618 * 22 21 20 24 24 H 1.08999 * 109.46681 * 189.09626 * 1 2 3 25 25 H 1.09001 * 109.47239 * 309.09158 * 1 2 3 26 26 H 1.08999 * 109.47033 * 69.09768 * 1 2 3 27 27 H 0.97004 * 119.99685 * 179.97438 * 9 8 6 28 28 H 1.08998 * 110.48560 * 265.90156 * 14 4 2 29 29 H 1.09000 * 110.59443 * 143.31619 * 14 4 2 30 30 H 1.08993 * 109.47300 * 180.02562 * 18 17 15 31 31 H 1.08999 * 109.47193 * 60.00062 * 19 18 17 32 32 H 1.09002 * 109.47318 * 299.99957 * 19 18 17 33 33 H 1.09002 * 109.47318 * 300.00165 * 20 19 18 34 34 H 1.08997 * 109.47364 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.47020 * 59.99690 * 21 20 19 36 36 H 1.08995 * 109.47597 * 179.97438 * 21 20 19 37 37 H 1.09009 * 109.46885 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.46987 * 299.99495 * 22 21 20 39 39 H 1.09002 * 109.46982 * 59.99874 * 23 22 21 40 40 H 1.08997 * 109.47669 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0601 -0.7669 1.2296 5 1 3.0048 -0.3436 1.5708 6 6 1.0436 -0.7784 2.3420 7 1 0.1061 -0.2558 2.2223 8 6 1.3104 -1.4562 3.5127 9 7 2.4519 -2.0930 3.6583 10 14 0.0506 -1.4699 4.8919 11 1 -1.2116 -2.0811 4.4034 12 1 0.5751 -2.2618 6.0334 13 1 -0.2129 -0.0776 5.3356 14 6 2.2661 -2.1870 0.6534 15 6 2.4562 -1.9613 -0.8304 16 8 2.9185 -2.7738 -1.6030 17 7 2.0379 -0.7292 -1.1679 18 6 2.0883 -0.1823 -2.5262 19 6 1.2503 -1.0580 -3.4599 20 6 1.3024 -0.4866 -4.8782 21 6 2.7525 -0.4634 -5.3657 22 6 3.5905 0.4122 -4.4319 23 6 3.5384 -0.1592 -3.0136 24 1 -0.3632 -1.0148 0.1625 25 1 -0.3634 0.6480 0.7976 26 1 -0.3633 0.3666 -0.9600 27 1 2.6397 -2.5695 4.4821 28 1 1.3862 -2.8040 0.8357 29 1 3.1526 -2.6512 1.0854 30 1 1.6898 0.8321 -2.5244 31 1 0.2171 -1.0742 -3.1128 32 1 1.6489 -2.0725 -3.4616 33 1 0.9036 0.5279 -4.8761 34 1 0.7051 -1.1101 -5.5433 35 1 3.1514 -1.4778 -5.3678 36 1 2.7897 -0.0567 -6.3763 37 1 4.6238 0.4283 -4.7790 38 1 3.1917 1.4266 -4.4298 39 1 3.9373 -1.1736 -3.0157 40 1 4.1357 0.4643 -2.3485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:15 Heat of formation + Delta-G solvation = -75.575526 kcal Electronic energy + Delta-G solvation = -19621.055304 eV Core-core repulsion = 16819.756615 eV Total energy + Delta-G solvation = -2801.298688 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65944 -38.83578 -37.76784 -34.98486 -33.03777 -31.69202 -30.99279 -29.74778 -27.09801 -25.26209 -23.64734 -23.47654 -21.94367 -20.63703 -19.72742 -18.16954 -17.73928 -16.59807 -16.46215 -16.25520 -15.64101 -15.14921 -14.93416 -14.80284 -14.72438 -14.23557 -13.97747 -13.70489 -13.30692 -13.13131 -13.07549 -12.82595 -12.69701 -12.62175 -12.37868 -12.10897 -11.97678 -11.88344 -11.53176 -11.30948 -11.19493 -11.04181 -11.00815 -10.60387 -10.23506 -9.49232 -8.10749 -6.20068 1.49076 1.49692 1.56460 1.71678 2.18871 2.47934 3.22596 3.62669 3.84175 3.92142 4.00561 4.11978 4.29168 4.32861 4.39774 4.42718 4.56684 4.59067 4.62067 4.65401 4.72852 4.89059 4.91826 5.01502 5.08172 5.12290 5.19207 5.24066 5.28348 5.30357 5.40681 5.43557 5.52078 5.54483 5.66180 5.87016 5.95765 6.23013 6.38110 6.88628 7.36694 7.49489 8.99451 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.005733 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.487257 B = 4882.788465 C = 5110.131998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.134 3.866 3 H 0.087 0.913 4 C 0.046 3.954 5 H 0.015 0.985 6 C -0.521 4.521 7 H 0.085 0.915 8 C 0.013 3.987 9 N -0.923 5.923 10 Si 0.954 3.046 11 H -0.271 1.271 12 H -0.295 1.295 13 H -0.266 1.266 14 C -0.123 4.123 15 C 0.512 3.488 16 O -0.585 6.585 17 N -0.604 5.604 18 C 0.155 3.845 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.106 4.106 23 C -0.132 4.132 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.259 0.741 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 8.067 -13.941 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.031 3.969 3 H 0.105 0.895 4 C 0.027 3.973 5 H 0.034 0.966 6 C -0.559 4.559 7 H 0.103 0.897 8 C -0.186 4.186 9 N -0.562 5.562 10 Si 0.780 3.220 11 H -0.196 1.196 12 H -0.221 1.221 13 H -0.191 1.191 14 C -0.164 4.164 15 C 0.302 3.698 16 O -0.467 6.467 17 N -0.335 5.335 18 C 0.053 3.947 19 C -0.168 4.168 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.170 4.170 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.886 7.607 -14.277 16.433 hybrid contribution -0.091 -0.794 1.377 1.592 sum -2.976 6.813 -12.901 14.890 Atomic orbital electron populations 1.21939 0.93823 1.01874 1.01250 1.21819 0.95394 0.95754 0.83894 0.89472 1.19544 0.96235 0.89590 0.91886 0.96647 1.21532 1.03240 1.32382 0.98738 0.89676 1.25798 0.96849 0.95122 1.00865 1.70105 1.24642 1.34227 1.27245 0.85659 0.79357 0.78384 0.78560 1.19573 1.22082 1.19059 1.22201 1.01667 1.02283 0.90216 1.21427 0.75352 0.81754 0.91256 1.90537 1.48147 1.49426 1.58613 1.48666 1.61016 1.14675 1.09132 1.21169 0.96139 0.98140 0.79243 1.21881 0.99252 0.99299 0.96362 1.21468 0.97114 1.02021 0.93861 1.21567 0.95069 0.99556 0.99577 1.21464 1.00767 0.99790 0.92405 1.21893 0.95937 1.00952 0.98266 0.94039 0.90586 0.92148 0.93174 0.90842 0.92213 0.87385 0.92093 0.93879 0.89905 0.91086 0.93812 0.89644 0.91177 0.89899 0.93895 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.24 71.98 0.59 -3.69 16 2 C 0.13 4.92 3.58 45.39 0.16 5.08 16 3 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 4 C 0.05 2.18 2.89 -10.54 -0.03 2.15 16 5 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 6 C -0.52 -25.68 7.65 25.60 0.20 -25.49 16 7 H 0.09 3.88 5.38 -2.91 -0.02 3.86 16 8 C 0.01 0.67 5.36 84.66 0.45 1.12 16 9 N -0.92 -52.09 12.68 21.45 0.27 -51.82 16 10 Si 0.95 41.23 29.54 68.60 2.03 43.25 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 14 C -0.12 -6.01 5.66 30.59 0.17 -5.84 16 15 C 0.51 23.09 7.41 87.90 0.65 23.75 16 16 O -0.59 -28.90 15.12 -3.02 -0.05 -28.94 16 17 N -0.60 -22.23 2.47 -770.74 -1.91 -24.13 16 18 C 0.15 4.50 2.74 44.99 0.12 4.62 16 19 C -0.13 -3.62 5.21 30.59 0.16 -3.46 16 20 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 21 C -0.12 -2.35 5.92 30.60 0.18 -2.17 16 22 C -0.11 -2.16 5.92 30.59 0.18 -1.97 16 23 C -0.13 -3.78 5.21 30.59 0.16 -3.63 16 24 H 0.04 1.52 7.82 -2.39 -0.02 1.50 16 25 H 0.08 2.40 6.74 -2.39 -0.02 2.38 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.07 3.75 7.89 -2.39 -0.02 3.73 16 29 H 0.06 3.21 8.10 -2.39 -0.02 3.19 16 30 H 0.11 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.52 6.78 -2.39 -0.02 1.50 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.54 6.80 -2.39 -0.02 1.52 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -61.19 308.28 4.53 -56.67 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.00 Total: 16.43 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 3.19 Total: -11.45 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.63 Total: -75.95 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.94 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -61.19 4.53 -56.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.910 kcal (2) G-P(sol) polarization free energy of solvation -61.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds