Wall clock time and date at job start Mon Mar 30 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.28447 * 2 1 4 4 C 1.54662 * 110.17977 * 122.12233 * 2 1 3 5 5 H 1.08998 * 111.19039 * 26.50733 * 4 2 1 6 6 C 1.50699 * 110.85102 * 262.70224 * 4 2 1 7 7 H 1.07997 * 120.00127 * 6.33844 * 6 4 2 8 8 C 1.37877 * 119.99605 * 186.32940 * 6 4 2 9 9 N 1.31517 * 120.00163 * 179.97438 * 8 6 4 10 10 Si 1.86804 * 120.00169 * 0.02562 * 8 6 4 11 11 H 1.48494 * 109.47317 * 89.99618 * 10 8 6 12 12 H 1.48501 * 109.47017 * 209.99745 * 10 8 6 13 13 H 1.48509 * 109.46896 * 329.99436 * 10 8 6 14 14 C 1.54626 * 101.68087 * 144.67792 * 4 2 1 15 15 C 1.51277 * 104.19968 * 334.99084 * 14 4 2 16 16 O 1.21284 * 124.94381 * 196.27584 * 15 14 4 17 17 N 1.34422 * 110.11725 * 16.24675 * 15 14 4 18 18 C 1.46496 * 124.34821 * 180.40877 * 17 15 14 19 19 C 1.52997 * 109.47079 * 60.03102 * 18 17 15 20 20 C 1.53006 * 109.47164 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46626 * 59.99702 * 20 19 18 22 22 C 1.52997 * 109.47592 * 300.00035 * 21 20 19 23 23 C 1.52996 * 109.47165 * 60.00300 * 22 21 20 24 24 H 1.09003 * 109.47611 * 180.52391 * 1 2 3 25 25 H 1.09000 * 109.47016 * 300.52672 * 1 2 3 26 26 H 1.09003 * 109.47074 * 60.51883 * 1 2 3 27 27 H 0.96998 * 120.00067 * 179.97438 * 9 8 6 28 28 H 1.09002 * 110.48811 * 216.30779 * 14 4 2 29 29 H 1.09002 * 110.48472 * 93.67087 * 14 4 2 30 30 H 1.09000 * 109.46684 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.46922 * 59.99748 * 19 18 17 32 32 H 1.09000 * 109.47140 * 299.99448 * 19 18 17 33 33 H 1.08993 * 109.46955 * 180.02562 * 20 19 18 34 34 H 1.09000 * 109.47050 * 300.00004 * 20 19 18 35 35 H 1.09000 * 109.47160 * 60.00369 * 21 20 19 36 36 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47140 * 300.00346 * 22 21 20 38 38 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47534 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47134 * 59.99508 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0635 -0.7719 1.2294 5 1 1.3458 -1.5195 1.5672 6 6 2.4165 0.1762 2.3463 7 1 2.1866 1.2275 2.2552 8 6 3.0327 -0.2985 3.4847 9 7 3.3412 0.5289 4.4593 10 14 3.4307 -2.1169 3.6422 11 1 4.7884 -2.3753 3.0992 12 1 3.3867 -2.5111 5.0733 13 1 2.4333 -2.9098 2.8794 14 6 3.3312 -1.4430 0.6518 15 6 3.0560 -1.5401 -0.8325 16 8 3.6651 -2.2472 -1.6072 17 7 2.0378 -0.7292 -1.1680 18 6 1.5074 -0.5870 -2.5262 19 6 0.9958 -1.9423 -3.0184 20 6 0.4412 -1.7936 -4.4367 21 6 1.5492 -1.2977 -5.3680 22 6 2.0608 0.0575 -4.8758 23 6 2.6153 -0.0911 -3.4576 24 1 -0.3634 -1.0276 0.0094 25 1 -0.3633 0.5220 0.8852 26 1 -0.3633 0.5058 -0.8946 27 1 3.7744 0.1948 5.2603 28 1 3.4662 -2.4360 1.0806 29 1 4.2088 -0.8238 0.8374 30 1 0.6875 0.1313 -2.5226 31 1 0.2062 -2.2953 -2.3550 32 1 1.8156 -2.6606 -3.0220 33 1 0.0763 -2.7590 -4.7871 34 1 -0.3787 -1.0754 -4.4327 35 1 2.3691 -2.0160 -5.3719 36 1 1.1540 -1.1914 -6.3783 37 1 1.2409 0.7758 -4.8718 38 1 2.8498 0.4110 -5.5395 39 1 2.9794 0.8744 -3.1067 40 1 3.4351 -0.8094 -3.4615 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710002792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:17 Heat of formation + Delta-G solvation = -59.084138 kcal Electronic energy + Delta-G solvation = -19666.173407 eV Core-core repulsion = 16865.589839 eV Total energy + Delta-G solvation = -2800.583568 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26423 -37.71922 -36.15197 -33.29544 -31.68479 -30.71472 -29.98970 -28.71394 -25.60451 -23.07740 -22.52811 -22.32812 -20.54712 -19.53190 -18.49006 -16.98755 -16.05500 -15.59983 -14.91901 -14.58862 -14.22782 -14.12695 -13.84814 -13.48582 -13.07160 -12.96829 -12.70045 -12.53210 -12.31966 -12.13008 -11.80304 -11.27978 -11.22096 -11.09359 -10.95954 -10.90932 -10.62367 -10.50399 -10.25696 -10.15651 -10.01159 -9.69082 -9.36637 -8.86043 -8.62901 -8.11150 -6.19551 -4.21524 3.22719 3.25183 3.32860 3.34176 3.53227 4.31938 4.71722 4.81466 4.94807 5.08044 5.11422 5.29289 5.32076 5.43380 5.54339 5.55683 5.56929 5.64788 5.67583 5.77741 5.92160 5.98184 6.01106 6.04455 6.13370 6.24330 6.30203 6.31060 6.34471 6.36326 6.45386 6.56505 6.63317 6.75437 7.17994 7.29141 7.54173 7.77881 8.35654 8.81201 8.85849 9.41537 10.92730 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.006341 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.776111 B = 4414.423101 C = 4636.548527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.079 0.921 4 C 0.017 3.983 5 H 0.047 0.953 6 C -0.514 4.514 7 H 0.080 0.920 8 C 0.078 3.922 9 N -0.894 5.894 10 Si 0.873 3.127 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.264 1.264 14 C -0.169 4.169 15 C 0.522 3.478 16 O -0.555 6.555 17 N -0.614 5.614 18 C 0.161 3.839 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.135 4.135 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.266 0.734 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.966 -1.790 -14.782 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.036 3.964 3 H 0.097 0.903 4 C -0.003 4.003 5 H 0.065 0.935 6 C -0.552 4.552 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.531 5.531 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.217 1.217 13 H -0.189 1.189 14 C -0.209 4.209 15 C 0.312 3.688 16 O -0.435 6.435 17 N -0.347 5.347 18 C 0.058 3.942 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.174 4.174 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.602 -2.114 -15.046 16.194 hybrid contribution 0.304 -0.888 0.321 0.992 sum -5.299 -3.002 -14.725 15.935 Atomic orbital electron populations 1.22036 0.95351 1.01792 1.01677 1.21912 0.93727 0.96365 0.84414 0.90320 1.20248 0.91899 0.95534 0.92596 0.93483 1.20812 1.39975 0.95410 0.99021 0.90192 1.24928 0.94797 0.97354 0.95422 1.69877 1.41204 1.34869 1.07139 0.87029 0.79723 0.86144 0.77034 1.19912 1.21678 1.18900 1.22992 1.03568 1.02654 0.91667 1.21221 0.78549 0.77776 0.91301 1.90582 1.52962 1.42070 1.57874 1.48641 1.34783 1.43364 1.07882 1.20831 0.95657 0.96955 0.80756 1.21937 1.01328 0.98086 0.95879 1.21473 0.97833 1.00933 0.94871 1.21553 0.98655 0.97325 0.98275 1.21472 1.00336 0.97165 0.96137 1.21944 0.99247 1.01908 0.94280 0.92799 0.90654 0.93546 0.92388 0.90442 0.87687 0.89884 0.92008 0.90376 0.92046 0.92146 0.91837 0.92294 0.92150 0.92008 0.91930 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.94 37.16 0.33 -1.98 16 2 C 0.14 2.53 3.45 -66.91 -0.23 2.30 16 3 H 0.08 1.49 7.79 -51.93 -0.40 1.08 16 4 C 0.02 0.36 2.04 -90.04 -0.18 0.18 16 5 H 0.05 1.04 7.19 -51.93 -0.37 0.67 16 6 C -0.51 -13.22 9.00 -34.44 -0.31 -13.54 16 7 H 0.08 2.20 7.90 -52.49 -0.41 1.79 16 8 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 9 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 10 Si 0.87 20.75 24.73 -169.99 -4.20 16.55 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.26 -6.03 6.40 56.52 0.36 -5.67 16 14 C -0.17 -3.66 4.67 -26.75 -0.12 -3.78 16 15 C 0.52 10.78 7.41 -10.86 -0.08 10.70 16 16 O -0.56 -12.43 15.12 5.55 0.08 -12.34 16 17 N -0.61 -10.94 2.68 -157.27 -0.42 -11.36 16 18 C 0.16 2.37 2.34 -67.93 -0.16 2.21 16 19 C -0.13 -1.87 5.21 -26.73 -0.14 -2.01 16 20 C -0.11 -1.23 5.92 -26.73 -0.16 -1.39 16 21 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 22 C -0.11 -1.25 5.92 -26.73 -0.16 -1.40 16 23 C -0.14 -1.91 5.21 -26.73 -0.14 -2.05 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.61 6.84 -51.93 -0.35 0.25 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.08 1.69 5.80 -51.93 -0.30 1.39 16 29 H 0.10 2.35 7.89 -51.93 -0.41 1.94 16 30 H 0.08 1.10 6.63 -51.93 -0.34 0.75 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.30 6.80 -51.93 -0.35 0.94 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.32 6.77 -51.93 -0.35 0.96 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -28.70 301.93 -7.53 -36.24 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.71 Total: 1.72 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.61 Total: -10.20 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.35 Total: -36.51 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.20 Total: 16.55 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.70 -7.53 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.845 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds