Wall clock time and date at job start Mon Mar 30 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.28447 * 2 1 4 4 C 1.54662 * 110.17977 * 122.12233 * 2 1 3 5 5 H 1.08998 * 111.19039 * 26.50733 * 4 2 1 6 6 C 1.50699 * 110.85102 * 262.70224 * 4 2 1 7 7 H 1.07997 * 120.00127 * 6.33844 * 6 4 2 8 8 C 1.37877 * 119.99605 * 186.32940 * 6 4 2 9 9 N 1.31517 * 120.00163 * 179.97438 * 8 6 4 10 10 Si 1.86804 * 120.00169 * 0.02562 * 8 6 4 11 11 H 1.48494 * 109.47317 * 89.99618 * 10 8 6 12 12 H 1.48501 * 109.47017 * 209.99745 * 10 8 6 13 13 H 1.48509 * 109.46896 * 329.99436 * 10 8 6 14 14 C 1.54626 * 101.68087 * 144.67792 * 4 2 1 15 15 C 1.51277 * 104.19968 * 334.99084 * 14 4 2 16 16 O 1.21284 * 124.94381 * 196.27584 * 15 14 4 17 17 N 1.34422 * 110.11725 * 16.24675 * 15 14 4 18 18 C 1.46496 * 124.34821 * 180.40877 * 17 15 14 19 19 C 1.52997 * 109.47079 * 60.03102 * 18 17 15 20 20 C 1.53006 * 109.47164 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46626 * 59.99702 * 20 19 18 22 22 C 1.52997 * 109.47592 * 300.00035 * 21 20 19 23 23 C 1.52996 * 109.47165 * 60.00300 * 22 21 20 24 24 H 1.09003 * 109.47611 * 180.52391 * 1 2 3 25 25 H 1.09000 * 109.47016 * 300.52672 * 1 2 3 26 26 H 1.09003 * 109.47074 * 60.51883 * 1 2 3 27 27 H 0.96998 * 120.00067 * 179.97438 * 9 8 6 28 28 H 1.09002 * 110.48811 * 216.30779 * 14 4 2 29 29 H 1.09002 * 110.48472 * 93.67087 * 14 4 2 30 30 H 1.09000 * 109.46684 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.46922 * 59.99748 * 19 18 17 32 32 H 1.09000 * 109.47140 * 299.99448 * 19 18 17 33 33 H 1.08993 * 109.46955 * 180.02562 * 20 19 18 34 34 H 1.09000 * 109.47050 * 300.00004 * 20 19 18 35 35 H 1.09000 * 109.47160 * 60.00369 * 21 20 19 36 36 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47140 * 300.00346 * 22 21 20 38 38 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47534 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47134 * 59.99508 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0635 -0.7719 1.2294 5 1 1.3458 -1.5195 1.5672 6 6 2.4165 0.1762 2.3463 7 1 2.1866 1.2275 2.2552 8 6 3.0327 -0.2985 3.4847 9 7 3.3412 0.5289 4.4593 10 14 3.4307 -2.1169 3.6422 11 1 4.7884 -2.3753 3.0992 12 1 3.3867 -2.5111 5.0733 13 1 2.4333 -2.9098 2.8794 14 6 3.3312 -1.4430 0.6518 15 6 3.0560 -1.5401 -0.8325 16 8 3.6651 -2.2472 -1.6072 17 7 2.0378 -0.7292 -1.1680 18 6 1.5074 -0.5870 -2.5262 19 6 0.9958 -1.9423 -3.0184 20 6 0.4412 -1.7936 -4.4367 21 6 1.5492 -1.2977 -5.3680 22 6 2.0608 0.0575 -4.8758 23 6 2.6153 -0.0911 -3.4576 24 1 -0.3634 -1.0276 0.0094 25 1 -0.3633 0.5220 0.8852 26 1 -0.3633 0.5058 -0.8946 27 1 3.7744 0.1948 5.2603 28 1 3.4662 -2.4360 1.0806 29 1 4.2088 -0.8238 0.8374 30 1 0.6875 0.1313 -2.5226 31 1 0.2062 -2.2953 -2.3550 32 1 1.8156 -2.6606 -3.0220 33 1 0.0763 -2.7590 -4.7871 34 1 -0.3787 -1.0754 -4.4327 35 1 2.3691 -2.0160 -5.3719 36 1 1.1540 -1.1914 -6.3783 37 1 1.2409 0.7758 -4.8718 38 1 2.8498 0.4110 -5.5395 39 1 2.9794 0.8744 -3.1067 40 1 3.4351 -0.8094 -3.4615 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:16 Heat of formation + Delta-G solvation = -75.555049 kcal Electronic energy + Delta-G solvation = -19666.887639 eV Core-core repulsion = 16865.589839 eV Total energy + Delta-G solvation = -2801.297800 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75828 -38.86136 -37.81609 -35.05917 -33.34171 -31.71070 -31.43254 -30.10234 -27.39646 -24.57372 -23.67921 -23.50862 -22.02534 -20.77808 -19.98907 -18.84018 -17.55455 -17.19215 -16.31798 -16.18800 -15.64275 -15.19774 -15.10937 -14.92516 -14.72417 -14.55628 -14.24966 -13.83799 -13.54314 -13.13636 -13.07991 -12.84744 -12.73623 -12.64789 -12.44696 -12.26038 -12.02668 -11.84889 -11.60064 -11.38553 -11.29777 -11.17070 -11.13173 -10.80771 -10.44501 -9.56698 -8.30919 -6.35254 1.33236 1.37403 1.43137 1.60534 2.10365 2.31555 3.03593 3.51872 3.73901 3.83191 3.91510 4.03383 4.14651 4.27130 4.31971 4.34974 4.37368 4.52475 4.56299 4.60120 4.64861 4.66488 4.81771 4.92126 4.98331 5.05290 5.11387 5.17560 5.22423 5.27116 5.29397 5.30841 5.39835 5.45542 5.53889 5.60417 5.84752 6.18020 6.30342 6.71214 7.24730 7.31813 8.84675 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.006341 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.776111 B = 4414.423101 C = 4636.548527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.142 3.858 3 H 0.072 0.928 4 C 0.015 3.985 5 H 0.051 0.949 6 C -0.506 4.506 7 H 0.052 0.948 8 C 0.028 3.972 9 N -0.940 5.940 10 Si 0.923 3.077 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.247 1.247 14 C -0.170 4.170 15 C 0.520 3.480 16 O -0.576 6.576 17 N -0.603 5.603 18 C 0.153 3.847 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.133 4.133 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.267 0.733 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 -2.146 -16.989 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.039 3.961 3 H 0.090 0.910 4 C -0.005 4.005 5 H 0.069 0.931 6 C -0.544 4.544 7 H 0.071 0.929 8 C -0.171 4.171 9 N -0.580 5.580 10 Si 0.749 3.251 11 H -0.197 1.197 12 H -0.217 1.217 13 H -0.171 1.171 14 C -0.211 4.211 15 C 0.309 3.691 16 O -0.458 6.458 17 N -0.335 5.335 18 C 0.052 3.948 19 C -0.169 4.169 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.172 4.172 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.555 -2.463 -17.283 19.023 hybrid contribution 0.911 -0.697 0.983 1.511 sum -6.644 -3.160 -16.300 17.884 Atomic orbital electron populations 1.21974 0.92418 1.02586 1.03101 1.21799 0.95961 0.95252 0.83071 0.91023 1.20161 0.92202 0.95213 0.92896 0.93096 1.21018 1.38569 0.94915 0.99936 0.92949 1.25624 0.95075 1.01035 0.95320 1.69997 1.43116 1.36831 1.08027 0.86205 0.79947 0.81937 0.77046 1.19733 1.21715 1.17061 1.22903 1.02947 1.02218 0.92997 1.20998 0.79260 0.78329 0.90561 1.90575 1.53891 1.43238 1.58072 1.48683 1.33629 1.41945 1.09204 1.21204 0.96467 0.98297 0.78825 1.21891 1.00226 0.96543 0.98192 1.21469 0.98258 1.02260 0.92532 1.21565 0.98114 0.96490 0.99604 1.21464 1.01203 0.98036 0.93809 1.21908 0.98260 1.00496 0.96515 0.92253 0.90975 0.90466 0.92395 0.90612 0.89043 0.87195 0.91881 0.93617 0.91026 0.89978 0.93653 0.89776 0.90046 0.91199 0.92455 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.94 71.98 0.64 -3.33 16 2 C 0.14 4.99 3.45 45.51 0.16 5.15 16 3 H 0.07 2.65 7.79 -2.39 -0.02 2.63 16 4 C 0.01 0.63 2.04 -10.42 -0.02 0.61 16 5 H 0.05 2.18 7.19 -2.39 -0.02 2.16 16 6 C -0.51 -26.37 9.00 25.60 0.23 -26.14 16 7 H 0.05 2.96 7.90 -2.91 -0.02 2.94 16 8 C 0.03 1.54 5.46 84.65 0.46 2.01 16 9 N -0.94 -55.84 13.96 21.45 0.30 -55.54 16 10 Si 0.92 42.84 24.73 68.60 1.70 44.53 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.25 -10.66 6.40 99.48 0.64 -10.02 16 14 C -0.17 -7.37 4.67 30.59 0.14 -7.23 16 15 C 0.52 21.33 7.41 87.90 0.65 21.98 16 16 O -0.58 -25.98 15.12 -3.04 -0.05 -26.03 16 17 N -0.60 -20.67 2.68 -770.06 -2.07 -22.73 16 18 C 0.15 4.14 2.34 44.99 0.11 4.25 16 19 C -0.13 -3.34 5.21 30.60 0.16 -3.18 16 20 C -0.11 -1.95 5.92 30.60 0.18 -1.77 16 21 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 22 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 23 C -0.13 -3.57 5.21 30.59 0.16 -3.41 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 1.68 6.84 -2.39 -0.02 1.66 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.08 3.27 5.80 -2.39 -0.01 3.26 16 29 H 0.09 4.17 7.89 -2.39 -0.02 4.15 16 30 H 0.11 2.42 6.63 -2.39 -0.02 2.41 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.48 6.80 -2.39 -0.02 1.46 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.55 6.77 -2.39 -0.02 1.53 16 Total: -1.00 -63.22 301.93 4.05 -59.17 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.93 Total: 15.51 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.23 Total: -14.91 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.77 Total: -78.27 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.70 Total: 44.53 kcal Total: -63.22 4.05 -59.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.387 kcal (2) G-P(sol) polarization free energy of solvation -63.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds