Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 C 1.32906 * 117.15277 * 83.37366 * 3 2 1 5 5 O 1.21280 * 118.27973 * 5.52259 * 4 3 2 6 6 C 1.50091 * 123.43898 * 185.50832 * 4 3 2 7 7 C 1.53259 * 109.93030 * 308.34798 * 6 4 3 8 8 C 1.52658 * 108.30096 * 91.69567 * 7 6 4 9 9 C 1.53288 * 109.46194 * 327.20788 * 8 7 6 10 10 H 1.09002 * 109.56015 * 59.77623 * 9 8 7 11 11 C 1.50694 * 109.56502 * 180.02562 * 9 8 7 12 12 H 1.08005 * 120.00219 * 35.11682 * 11 9 8 13 13 C 1.37876 * 120.00304 * 215.11625 * 11 9 8 14 14 N 1.31516 * 120.00011 * 4.84904 * 13 11 9 15 15 Si 1.86798 * 120.00388 * 184.85116 * 13 11 9 16 16 H 1.48499 * 109.47046 * 270.00062 * 15 13 11 17 17 H 1.48506 * 109.47025 * 29.99780 * 15 13 11 18 18 H 1.48495 * 109.47635 * 149.99784 * 15 13 11 19 19 C 1.45738 * 117.12019 * 263.47817 * 3 2 1 20 20 H 1.09004 * 109.05650 * 269.39698 * 19 3 2 21 21 C 1.52999 * 109.24802 * 28.62608 * 19 3 2 22 22 C 1.53007 * 117.49742 * 257.50757 * 21 19 3 23 23 C 1.53002 * 117.49619 * 188.88800 * 21 19 3 24 24 H 1.08999 * 109.47164 * 305.11777 * 1 2 3 25 25 H 1.09007 * 109.47246 * 65.11195 * 1 2 3 26 26 H 1.08997 * 109.47413 * 185.11500 * 1 2 3 27 27 H 1.08998 * 109.47077 * 239.99496 * 2 1 3 28 28 H 1.09004 * 109.47132 * 120.00375 * 2 1 3 29 29 H 1.09006 * 109.39335 * 188.21383 * 6 4 3 30 30 H 1.08991 * 109.32443 * 68.44575 * 6 4 3 31 31 H 1.09001 * 109.69602 * 331.99529 * 7 6 4 32 32 H 1.09004 * 109.73013 * 211.41998 * 7 6 4 33 33 H 1.09001 * 109.46811 * 207.20717 * 8 7 6 34 34 H 1.08996 * 109.46776 * 87.20989 * 8 7 6 35 35 H 0.97006 * 119.99887 * 354.88477 * 14 13 11 36 36 H 1.08994 * 115.55263 * 43.21590 * 21 19 3 37 37 H 1.09000 * 117.49621 * 0.02562 * 22 21 19 38 38 H 1.09002 * 117.49371 * 145.01937 * 22 21 19 39 39 H 1.09002 * 117.49689 * 214.97643 * 23 21 19 40 40 H 1.08998 * 117.50083 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0919 1.9985 1.1747 5 8 1.8518 1.3582 2.1763 6 6 2.4567 3.4465 1.3267 7 6 3.7588 3.7390 0.5732 8 6 3.4033 4.1883 -0.8418 9 6 2.1300 3.4690 -1.3013 10 1 1.3104 3.7095 -0.6242 11 6 1.7772 3.9104 -2.6983 12 1 2.5601 4.1296 -3.4093 13 6 0.4550 4.0344 -3.0689 14 7 -0.4967 3.8604 -2.1781 15 14 0.0153 4.4494 -4.8363 16 1 -0.0602 5.9240 -4.9944 17 1 1.0563 3.9067 -5.7459 18 1 -1.2995 3.8474 -5.1738 19 6 2.3787 1.9584 -1.2888 20 1 3.4344 1.7675 -1.4815 21 6 1.5409 1.3016 -2.3876 22 6 2.2192 0.2366 -3.2518 23 6 1.9092 1.6149 -3.8392 24 1 -0.3633 0.5912 0.8406 25 1 -0.3634 0.4325 -0.9323 26 1 -0.3634 -1.0235 0.0916 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.5907 3.6770 2.3836 30 1 1.6565 4.0647 0.9200 31 1 4.3688 2.8367 0.5297 32 1 4.3090 4.5302 1.0826 33 1 4.2229 3.9436 -1.5174 34 1 3.2352 5.2652 -0.8495 35 1 -0.2729 3.5724 -1.2792 36 1 0.4851 1.1637 -2.1548 37 1 3.2622 0.0036 -3.0371 38 1 1.6095 -0.6023 -3.5874 39 1 1.0956 1.6827 -4.5614 40 1 2.7480 2.2893 -4.0114 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710003087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = -7.796206 kcal Electronic energy + Delta-G solvation = -20635.935470 eV Core-core repulsion = 17837.575914 eV Total energy + Delta-G solvation = -2798.359556 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33414 -37.51367 -35.52661 -34.38642 -32.71324 -30.22563 -29.44684 -26.08657 -25.36402 -23.42433 -22.26737 -21.19173 -20.07038 -19.34335 -18.69979 -17.02697 -16.18184 -15.57627 -14.97497 -14.26169 -14.20506 -13.86497 -13.63634 -13.48859 -13.05501 -12.53177 -12.33350 -12.20407 -11.75427 -11.65535 -11.42640 -11.15587 -10.99352 -10.79334 -10.61899 -10.55054 -10.29292 -10.20040 -9.94425 -9.42798 -9.29058 -9.06291 -8.94159 -8.67829 -8.24791 -7.96883 -6.41203 -4.06365 3.25766 3.36034 3.37438 3.52461 3.70352 4.43532 4.72713 5.10602 5.26050 5.38212 5.45674 5.51169 5.58761 5.69884 5.79624 5.85096 5.86595 5.99767 6.02174 6.14688 6.19626 6.21087 6.26479 6.33579 6.36088 6.45928 6.49922 6.67013 6.71635 6.76548 6.80560 6.96227 7.10654 7.18164 7.25340 7.43387 8.02712 8.28928 8.34026 8.78760 8.80597 9.57860 10.96588 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.010494 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.505266 B = 2667.649671 C = 3136.760591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.586 5.586 4 C 0.520 3.480 5 O -0.579 6.579 6 C -0.140 4.140 7 C -0.117 4.117 8 C -0.110 4.110 9 C 0.014 3.986 10 H 0.055 0.945 11 C -0.577 4.577 12 H 0.052 0.948 13 C 0.034 3.966 14 N -0.907 5.907 15 Si 1.054 2.946 16 H -0.291 1.291 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.175 3.825 20 H 0.049 0.951 21 C -0.118 4.118 22 C -0.225 4.225 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.270 0.730 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.342 -3.745 -0.132 6.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.316 5.316 4 C 0.309 3.691 5 O -0.461 6.461 6 C -0.179 4.179 7 C -0.155 4.155 8 C -0.148 4.148 9 C -0.005 4.005 10 H 0.073 0.927 11 C -0.615 4.615 12 H 0.070 0.930 13 C -0.172 4.172 14 N -0.543 5.543 15 Si 0.883 3.117 16 H -0.218 1.218 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.072 3.928 20 H 0.067 0.933 21 C -0.137 4.137 22 C -0.262 4.262 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.964 -3.709 -0.640 5.467 hybrid contribution 1.215 -0.327 0.877 1.534 sum 5.179 -4.036 0.237 6.571 Atomic orbital electron populations 1.22206 0.96116 1.01198 1.02832 1.21402 0.94602 0.83989 1.02137 1.47570 1.63115 1.13706 1.07234 1.19932 0.76705 0.89805 0.82631 1.90622 1.52469 1.66457 1.36549 1.21888 1.00520 0.93575 1.01943 1.21614 0.95593 1.00717 0.97588 1.21775 0.99243 1.00540 0.93195 1.19542 0.93996 0.88129 0.98876 0.92735 1.21617 0.94379 1.49303 0.96170 0.93001 1.25555 0.92669 0.94266 1.04673 1.70782 1.35312 1.42836 1.05327 0.83798 0.75958 0.76665 0.75304 1.21757 1.20969 1.21121 1.21259 0.95543 0.97012 0.78989 0.93316 1.22087 0.99109 0.99623 0.92844 1.23302 1.00315 0.93965 1.08666 1.22674 1.02823 0.93960 0.95457 0.92614 0.91615 0.92663 0.90316 0.91135 0.89910 0.88000 0.92662 0.91975 0.93112 0.92294 0.91737 0.87783 0.90226 0.90345 0.90367 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.98 37.16 0.37 -2.54 16 2 C 0.10 1.81 5.18 -4.04 -0.02 1.79 16 3 N -0.59 -11.41 2.75 -167.41 -0.46 -11.87 16 4 C 0.52 10.61 6.56 -12.11 -0.08 10.53 16 5 O -0.58 -13.12 16.05 5.56 0.09 -13.03 16 6 C -0.14 -2.52 5.38 -28.04 -0.15 -2.67 16 7 C -0.12 -1.93 5.75 -26.77 -0.15 -2.09 16 8 C -0.11 -2.04 4.99 -26.76 -0.13 -2.18 16 9 C 0.01 0.29 1.67 -91.58 -0.15 0.14 16 10 H 0.05 1.30 3.57 -51.93 -0.19 1.11 16 11 C -0.58 -13.55 4.99 -34.44 -0.17 -13.72 16 12 H 0.05 1.23 7.02 -52.48 -0.37 0.86 16 13 C 0.03 0.84 4.06 -17.82 -0.07 0.77 16 14 N -0.91 -24.50 13.63 55.43 0.76 -23.75 16 15 Si 1.05 23.00 28.14 -169.99 -4.78 18.22 16 16 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.17 3.44 2.43 -68.30 -0.17 3.27 16 20 H 0.05 0.95 7.58 -51.93 -0.39 0.56 16 21 C -0.12 -2.31 2.65 -90.62 -0.24 -2.55 16 22 C -0.23 -3.76 9.10 -26.73 -0.24 -4.01 16 23 C -0.11 -2.14 6.88 -26.73 -0.18 -2.32 16 24 H 0.05 1.08 7.96 -51.93 -0.41 0.66 16 25 H 0.07 1.24 5.61 -51.93 -0.29 0.95 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.29 6.06 -51.93 -0.31 0.97 16 28 H 0.07 1.27 7.25 -51.93 -0.38 0.89 16 29 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 30 H 0.10 1.96 5.89 -51.93 -0.31 1.65 16 31 H 0.05 0.91 7.82 -51.93 -0.41 0.50 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.27 7.39 6.45 -40.82 -0.26 7.13 16 36 H 0.10 2.26 5.44 -51.93 -0.28 1.98 16 37 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.53 6.90 -51.93 -0.36 1.17 16 40 H 0.10 1.99 6.51 -51.93 -0.34 1.65 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -26.72 292.44 -7.43 -34.15 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.04 Total: 7.43 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.40 Total: -15.56 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.30 Total: -35.62 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.78 Total: 18.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.72 -7.43 -34.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.356 kcal (2) G-P(sol) polarization free energy of solvation -26.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds