Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 C 1.32906 * 117.15277 * 83.37366 * 3 2 1 5 5 O 1.21280 * 118.27973 * 5.52259 * 4 3 2 6 6 C 1.50091 * 123.43898 * 185.50832 * 4 3 2 7 7 C 1.53259 * 109.93030 * 308.34798 * 6 4 3 8 8 C 1.52658 * 108.30096 * 91.69567 * 7 6 4 9 9 C 1.53288 * 109.46194 * 327.20788 * 8 7 6 10 10 H 1.09002 * 109.56015 * 59.77623 * 9 8 7 11 11 C 1.50694 * 109.56502 * 180.02562 * 9 8 7 12 12 H 1.08005 * 120.00219 * 35.11682 * 11 9 8 13 13 C 1.37876 * 120.00304 * 215.11625 * 11 9 8 14 14 N 1.31516 * 120.00011 * 4.84904 * 13 11 9 15 15 Si 1.86798 * 120.00388 * 184.85116 * 13 11 9 16 16 H 1.48499 * 109.47046 * 270.00062 * 15 13 11 17 17 H 1.48506 * 109.47025 * 29.99780 * 15 13 11 18 18 H 1.48495 * 109.47635 * 149.99784 * 15 13 11 19 19 C 1.45738 * 117.12019 * 263.47817 * 3 2 1 20 20 H 1.09004 * 109.05650 * 269.39698 * 19 3 2 21 21 C 1.52999 * 109.24802 * 28.62608 * 19 3 2 22 22 C 1.53007 * 117.49742 * 257.50757 * 21 19 3 23 23 C 1.53002 * 117.49619 * 188.88800 * 21 19 3 24 24 H 1.08999 * 109.47164 * 305.11777 * 1 2 3 25 25 H 1.09007 * 109.47246 * 65.11195 * 1 2 3 26 26 H 1.08997 * 109.47413 * 185.11500 * 1 2 3 27 27 H 1.08998 * 109.47077 * 239.99496 * 2 1 3 28 28 H 1.09004 * 109.47132 * 120.00375 * 2 1 3 29 29 H 1.09006 * 109.39335 * 188.21383 * 6 4 3 30 30 H 1.08991 * 109.32443 * 68.44575 * 6 4 3 31 31 H 1.09001 * 109.69602 * 331.99529 * 7 6 4 32 32 H 1.09004 * 109.73013 * 211.41998 * 7 6 4 33 33 H 1.09001 * 109.46811 * 207.20717 * 8 7 6 34 34 H 1.08996 * 109.46776 * 87.20989 * 8 7 6 35 35 H 0.97006 * 119.99887 * 354.88477 * 14 13 11 36 36 H 1.08994 * 115.55263 * 43.21590 * 21 19 3 37 37 H 1.09000 * 117.49621 * 0.02562 * 22 21 19 38 38 H 1.09002 * 117.49371 * 145.01937 * 22 21 19 39 39 H 1.09002 * 117.49689 * 214.97643 * 23 21 19 40 40 H 1.08998 * 117.50083 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0919 1.9985 1.1747 5 8 1.8518 1.3582 2.1763 6 6 2.4567 3.4465 1.3267 7 6 3.7588 3.7390 0.5732 8 6 3.4033 4.1883 -0.8418 9 6 2.1300 3.4690 -1.3013 10 1 1.3104 3.7095 -0.6242 11 6 1.7772 3.9104 -2.6983 12 1 2.5601 4.1296 -3.4093 13 6 0.4550 4.0344 -3.0689 14 7 -0.4967 3.8604 -2.1781 15 14 0.0153 4.4494 -4.8363 16 1 -0.0602 5.9240 -4.9944 17 1 1.0563 3.9067 -5.7459 18 1 -1.2995 3.8474 -5.1738 19 6 2.3787 1.9584 -1.2888 20 1 3.4344 1.7675 -1.4815 21 6 1.5409 1.3016 -2.3876 22 6 2.2192 0.2366 -3.2518 23 6 1.9092 1.6149 -3.8392 24 1 -0.3633 0.5912 0.8406 25 1 -0.3634 0.4325 -0.9323 26 1 -0.3634 -1.0235 0.0916 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.5907 3.6770 2.3836 30 1 1.6565 4.0647 0.9200 31 1 4.3688 2.8367 0.5297 32 1 4.3090 4.5302 1.0826 33 1 4.2229 3.9436 -1.5174 34 1 3.2352 5.2652 -0.8495 35 1 -0.2729 3.5724 -1.2792 36 1 0.4851 1.1637 -2.1548 37 1 3.2622 0.0036 -3.0371 38 1 1.6095 -0.6023 -3.5874 39 1 1.0956 1.6827 -4.5614 40 1 2.7480 2.2893 -4.0114 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710003087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = -21.799040 kcal Electronic energy + Delta-G solvation = -20636.542679 eV Core-core repulsion = 17837.575914 eV Total energy + Delta-G solvation = -2798.966765 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90556 -39.12343 -37.02704 -35.95165 -34.49183 -31.71318 -31.08674 -27.60353 -27.08725 -25.06174 -23.74799 -22.68696 -21.60872 -20.92149 -20.26779 -18.79782 -17.71742 -17.17727 -16.55959 -15.83986 -15.73681 -15.54190 -15.19598 -15.00272 -14.60735 -14.12545 -13.85286 -13.75197 -13.29783 -13.16173 -13.02621 -12.71100 -12.64557 -12.35873 -12.15295 -12.03843 -11.88869 -11.74996 -11.46078 -10.97891 -10.89146 -10.66808 -10.60785 -10.34351 -10.10797 -9.55672 -8.37744 -6.00501 1.58972 1.61796 1.65950 1.78206 2.18548 2.65089 3.22471 3.41713 3.64663 3.89805 4.00688 4.06689 4.15257 4.24846 4.32014 4.39966 4.41962 4.48924 4.53583 4.70274 4.75336 4.79434 4.84197 4.91191 4.92867 4.99386 5.03702 5.15604 5.22918 5.27913 5.30114 5.48974 5.56524 5.57862 5.69149 5.80302 6.21641 6.41079 6.65960 6.86431 7.20635 7.68806 9.00603 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.010494 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.505266 B = 2667.649671 C = 3136.760591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 N -0.586 5.586 4 C 0.512 3.488 5 O -0.606 6.606 6 C -0.137 4.137 7 C -0.105 4.105 8 C -0.105 4.105 9 C 0.008 3.992 10 H 0.028 0.972 11 C -0.562 4.562 12 H 0.051 0.949 13 C -0.003 4.003 14 N -0.941 5.941 15 Si 1.081 2.919 16 H -0.290 1.290 17 H -0.258 1.258 18 H -0.297 1.297 19 C 0.184 3.816 20 H 0.059 0.941 21 C -0.136 4.136 22 C -0.189 4.189 23 C -0.124 4.124 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.203 -4.584 -0.811 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.021 4.021 3 N -0.315 5.315 4 C 0.301 3.699 5 O -0.491 6.491 6 C -0.176 4.176 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.012 4.012 10 H 0.046 0.954 11 C -0.600 4.600 12 H 0.069 0.931 13 C -0.202 4.202 14 N -0.580 5.580 15 Si 0.907 3.093 16 H -0.217 1.217 17 H -0.182 1.182 18 H -0.223 1.223 19 C 0.082 3.918 20 H 0.077 0.923 21 C -0.155 4.155 22 C -0.226 4.226 23 C -0.162 4.162 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.855 -4.547 -1.344 7.534 hybrid contribution 0.639 -0.069 1.089 1.265 sum 6.494 -4.616 -0.255 7.971 Atomic orbital electron populations 1.22119 0.96220 1.02379 1.00755 1.21515 0.94446 0.83242 1.02941 1.47620 1.62571 1.14400 1.06936 1.20372 0.76353 0.90638 0.82496 1.90600 1.53823 1.67278 1.37355 1.21877 1.00862 0.91760 1.03140 1.21548 0.94831 1.01886 0.96045 1.21681 0.97989 0.99811 0.94823 1.19556 0.94550 0.89818 0.97240 0.95413 1.21810 0.93887 1.47324 0.96999 0.93073 1.26363 0.93179 0.94363 1.06322 1.70887 1.36103 1.45787 1.05200 0.83444 0.75950 0.76510 0.73345 1.21668 1.18228 1.22342 1.21044 0.95944 0.95678 0.79161 0.92281 1.21971 0.98176 1.02255 0.93067 1.23336 1.01254 0.93026 1.04955 1.22602 1.02487 0.96182 0.94895 0.95185 0.93198 0.89711 0.88405 0.91187 0.88405 0.89634 0.92117 0.88995 0.92191 0.92937 0.93168 0.90242 0.88311 0.88510 0.91154 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 9.98 71.98 0.72 -4.76 16 2 C 0.10 3.47 5.18 86.38 0.45 3.92 16 3 N -0.59 -22.35 2.75 -802.99 -2.20 -24.56 16 4 C 0.51 20.65 6.56 87.76 0.58 21.22 16 5 O -0.61 -27.36 16.05 -3.03 -0.05 -27.41 16 6 C -0.14 -4.82 5.38 29.74 0.16 -4.66 16 7 C -0.11 -3.22 5.75 30.57 0.18 -3.05 16 8 C -0.11 -3.74 4.99 30.58 0.15 -3.59 16 9 C 0.01 0.32 1.67 -11.42 -0.02 0.30 16 10 H 0.03 1.35 3.57 -2.39 -0.01 1.35 16 11 C -0.56 -26.14 4.99 25.60 0.13 -26.01 16 12 H 0.05 2.36 7.02 -2.91 -0.02 2.34 16 13 C 0.00 -0.13 4.06 84.65 0.34 0.22 16 14 N -0.94 -52.25 13.63 21.45 0.29 -51.96 16 15 Si 1.08 46.15 28.14 68.60 1.93 48.08 16 16 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 18 H -0.30 -13.16 7.11 99.48 0.71 -12.46 16 19 C 0.18 7.03 2.43 45.16 0.11 7.14 16 20 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 21 C -0.14 -5.16 2.65 -10.79 -0.03 -5.18 16 22 C -0.19 -5.70 9.10 30.60 0.28 -5.43 16 23 C -0.12 -4.54 6.88 30.60 0.21 -4.33 16 24 H 0.03 1.17 7.96 -2.39 -0.02 1.15 16 25 H 0.05 1.90 5.61 -2.38 -0.01 1.89 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.10 2.95 6.06 -2.39 -0.01 2.93 16 28 H 0.07 2.43 7.25 -2.38 -0.02 2.41 16 29 H 0.10 3.11 8.09 -2.38 -0.02 3.10 16 30 H 0.09 3.34 5.89 -2.39 -0.01 3.33 16 31 H 0.06 1.82 7.82 -2.39 -0.02 1.80 16 32 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.06 2.02 8.09 -2.39 -0.02 2.00 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.26 14.64 6.45 -92.70 -0.60 14.04 16 36 H 0.08 3.47 5.44 -2.39 -0.01 3.46 16 37 H 0.10 2.66 8.09 -2.39 -0.02 2.64 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.07 2.66 6.90 -2.39 -0.02 2.65 16 40 H 0.10 3.57 6.51 -2.39 -0.02 3.55 16 Total: -1.00 -57.68 292.44 4.42 -53.26 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 1.20 Total: 26.80 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 3.25 Total: -24.21 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.91 Total: -76.52 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.93 Total: 48.08 kcal Total: -57.68 4.42 -53.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.462 kcal (2) G-P(sol) polarization free energy of solvation -57.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds