Wall clock time and date at job start Mon Mar 30 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34566 * 124.43574 * 2 1 4 4 O 1.21283 * 124.91763 * 359.59843 * 3 2 1 5 5 C 1.51283 * 110.14069 * 179.64114 * 3 2 1 6 6 C 1.54626 * 104.19475 * 343.68272 * 5 3 2 7 7 H 1.09000 * 111.00150 * 142.92816 * 6 5 3 8 8 C 1.50704 * 110.96738 * 266.67522 * 6 5 3 9 9 H 1.08001 * 119.99888 * 107.04112 * 8 6 5 10 10 C 1.37880 * 120.00129 * 287.04597 * 8 6 5 11 11 N 1.31516 * 119.99758 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 120.00224 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47042 * 59.99942 * 12 10 8 14 14 H 1.48498 * 109.47298 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47121 * 299.99708 * 12 10 8 16 16 C 1.46764 * 124.34744 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.24598 * 77.93314 * 16 2 1 18 18 C 1.52990 * 110.24736 * 316.01913 * 16 2 1 19 19 C 1.53003 * 109.47382 * 70.12072 * 18 16 2 20 20 C 1.52999 * 109.47280 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.47007 * 300.00096 * 20 19 18 22 22 C 1.52993 * 109.47242 * 60.00219 * 21 20 19 23 23 C 1.53002 * 109.47297 * 299.99838 * 22 21 20 24 24 H 1.09000 * 109.47412 * 263.98668 * 1 2 3 25 25 H 1.09003 * 109.46750 * 23.98510 * 1 2 3 26 26 H 1.09000 * 109.47380 * 143.98074 * 1 2 3 27 27 H 1.08999 * 110.48698 * 225.00063 * 5 3 2 28 28 H 1.08996 * 110.59262 * 102.41230 * 5 3 2 29 29 H 0.97001 * 119.99922 * 180.02562 * 11 10 8 30 30 H 1.09007 * 109.47445 * 310.12565 * 18 16 2 31 31 H 1.09001 * 109.47050 * 300.00263 * 19 18 16 32 32 H 1.08999 * 109.46583 * 60.00216 * 19 18 16 33 33 H 1.09003 * 109.47110 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.47553 * 60.00149 * 20 19 18 35 35 H 1.09003 * 109.47183 * 299.99833 * 21 20 19 36 36 H 1.09001 * 109.47244 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47113 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47346 * 59.99715 * 22 21 20 39 39 H 1.09003 * 109.46822 * 300.00198 * 23 22 21 40 40 H 1.08993 * 109.47283 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1098 0.0000 4 8 1.7983 2.2448 -0.0070 5 6 3.6919 0.7363 0.0089 6 6 3.7019 -0.7499 0.4354 7 1 4.4751 -1.3039 -0.0969 8 6 3.8773 -0.8819 1.9263 9 1 3.0423 -1.1776 2.5442 10 6 5.1038 -0.6252 2.5016 11 7 6.1207 -0.2656 1.7491 12 14 5.3211 -0.7882 4.3497 13 1 5.0155 -2.1813 4.7631 14 1 6.7228 -0.4604 4.7142 15 1 4.3978 0.1471 5.0411 16 6 2.2930 -1.2117 0.0005 17 1 2.3293 -1.6442 -0.9993 18 6 1.7390 -2.2312 0.9977 19 6 0.4160 -2.7919 0.4721 20 6 -0.1383 -3.8109 1.4696 21 6 0.8658 -4.9520 1.6441 22 6 2.1887 -4.3914 2.1699 23 6 2.7431 -3.3723 1.1723 24 1 -0.3634 -0.1077 1.0220 25 1 -0.3633 0.9390 -0.4178 26 1 -0.3634 -0.8312 -0.6043 27 1 4.2361 1.3443 0.7316 28 1 4.1227 0.8507 -0.9858 29 1 6.9836 -0.0854 2.1538 30 1 1.5712 -1.7451 1.9589 31 1 -0.2995 -1.9790 0.3481 32 1 0.5838 -3.2779 -0.4890 33 1 -1.0806 -4.2107 1.0949 34 1 -0.3062 -3.3246 2.4305 35 1 1.0336 -5.4385 0.6832 36 1 0.4707 -5.6783 2.3545 37 1 2.9039 -5.2044 2.2946 38 1 2.0209 -3.9049 3.1308 39 1 2.9109 -3.8588 0.2114 40 1 3.6858 -2.9732 1.5467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710005728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:10 Heat of formation + Delta-G solvation = -49.289218 kcal Electronic energy + Delta-G solvation = -20090.383998 eV Core-core repulsion = 17290.225169 eV Total energy + Delta-G solvation = -2800.158829 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00449 -37.82361 -35.50789 -33.49989 -31.32959 -30.78249 -30.01766 -26.48029 -25.82299 -24.40820 -22.13091 -21.48826 -19.79245 -19.35440 -18.41357 -16.78245 -15.82173 -15.07595 -14.78358 -14.56911 -14.47979 -13.84868 -13.63044 -13.12367 -12.89218 -12.55276 -12.36364 -12.21023 -12.03399 -11.68756 -11.56144 -11.20160 -11.00466 -10.88184 -10.75819 -10.65066 -10.54606 -10.19469 -10.14776 -9.73967 -9.51131 -9.15594 -8.92773 -8.81389 -8.42467 -7.88473 -6.13062 -4.14491 3.27253 3.32982 3.35865 3.51880 3.86880 4.35842 5.06955 5.14827 5.16629 5.20051 5.37793 5.59498 5.66603 5.76619 5.80354 5.82213 5.95617 5.98477 5.99489 6.05619 6.09758 6.19530 6.31199 6.36674 6.38413 6.51076 6.57215 6.59647 6.67174 6.76949 6.78361 7.11518 7.34629 7.36932 7.41943 7.58263 7.83775 7.98447 8.24688 8.84860 9.09398 9.48010 10.95987 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.011740 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.382055 B = 2384.492249 C = 3729.268154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.616 5.616 3 C 0.523 3.477 4 O -0.568 6.568 5 C -0.141 4.141 6 C 0.051 3.949 7 H 0.058 0.942 8 C -0.510 4.510 9 H 0.068 0.932 10 C 0.066 3.934 11 N -0.885 5.885 12 Si 0.886 3.114 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.138 3.862 17 H 0.054 0.946 18 C -0.073 4.073 19 C -0.141 4.141 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.120 4.120 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 -7.941 -2.200 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.349 5.349 3 C 0.314 3.686 4 O -0.448 6.448 5 C -0.181 4.181 6 C 0.032 3.968 7 H 0.076 0.924 8 C -0.548 4.548 9 H 0.086 0.914 10 C -0.137 4.137 11 N -0.522 5.522 12 Si 0.714 3.286 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.035 3.965 17 H 0.072 0.928 18 C -0.092 4.092 19 C -0.178 4.178 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.157 4.157 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.445 -7.307 -2.204 11.383 hybrid contribution 0.083 -0.122 1.039 1.049 sum -8.362 -7.429 -1.165 11.246 Atomic orbital electron populations 1.21641 0.80680 1.01765 1.00918 1.48265 1.05119 1.08193 1.73364 1.21526 0.90609 0.83541 0.72941 1.90577 1.79795 1.21795 1.52625 1.22465 0.90933 1.02859 1.01854 1.19727 0.89468 0.90221 0.97342 0.92391 1.21077 0.96061 1.46493 0.91131 0.91361 1.24956 0.96052 0.94893 0.97759 1.69933 1.01506 1.45550 1.35227 0.86734 0.77184 0.78728 0.85949 1.20017 1.21336 1.20288 1.21994 0.93152 0.84285 0.97097 0.92785 1.21206 0.93336 0.95235 0.99389 1.22221 0.98568 0.98671 0.98333 1.21481 0.97507 0.96611 0.99632 1.21549 0.96300 0.97244 1.00454 1.21507 0.95753 0.98598 0.99541 1.21807 1.01469 0.94374 0.98074 0.93304 0.91744 0.91140 0.88010 0.91152 0.92716 0.90136 0.90957 0.92763 0.93088 0.92400 0.92574 0.93174 0.92792 0.92396 0.93664 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 8.95 59.85 0.54 1.98 16 2 N -0.62 -11.88 3.19 -172.65 -0.55 -12.43 16 3 C 0.52 11.88 8.03 -10.79 -0.09 11.79 16 4 O -0.57 -14.39 17.52 5.56 0.10 -14.29 16 5 C -0.14 -3.20 6.19 -26.74 -0.17 -3.37 16 6 C 0.05 1.13 2.14 -90.12 -0.19 0.94 16 7 H 0.06 1.35 8.12 -51.93 -0.42 0.93 16 8 C -0.51 -12.23 5.59 -34.44 -0.19 -12.42 16 9 H 0.07 1.63 5.25 -52.49 -0.28 1.36 16 10 C 0.07 1.68 5.23 -17.82 -0.09 1.59 16 11 N -0.88 -23.50 12.86 55.43 0.71 -22.79 16 12 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C 0.14 2.56 2.87 -67.00 -0.19 2.37 16 17 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.07 -1.22 1.16 -90.62 -0.11 -1.33 16 19 C -0.14 -1.95 4.71 -26.73 -0.13 -2.07 16 20 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 21 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 22 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 23 C -0.12 -2.01 4.60 -26.73 -0.12 -2.13 16 24 H 0.05 0.74 7.89 -51.93 -0.41 0.33 16 25 H 0.06 1.03 7.80 -51.93 -0.41 0.62 16 26 H 0.07 0.92 5.99 -51.93 -0.31 0.60 16 27 H 0.10 2.60 7.48 -51.93 -0.39 2.21 16 28 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.08 1.55 6.34 -51.93 -0.33 1.22 16 31 H 0.07 0.95 3.79 -51.93 -0.20 0.76 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.11 2.24 5.28 -51.93 -0.27 1.97 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -27.40 299.33 -7.84 -35.24 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.37 Total: 2.42 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.22 Total: -7.79 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.16 Total: -35.22 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.10 Total: -14.29 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.40 -7.84 -35.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710005728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.045 kcal (2) G-P(sol) polarization free energy of solvation -27.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds