Wall clock time and date at job start Mon Mar 30 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34566 * 124.43574 * 2 1 4 4 O 1.21283 * 124.91763 * 359.59843 * 3 2 1 5 5 C 1.51283 * 110.14069 * 179.64114 * 3 2 1 6 6 C 1.54626 * 104.19475 * 343.68272 * 5 3 2 7 7 H 1.09000 * 111.00150 * 142.92816 * 6 5 3 8 8 C 1.50704 * 110.96738 * 266.67522 * 6 5 3 9 9 H 1.08001 * 119.99888 * 107.04112 * 8 6 5 10 10 C 1.37880 * 120.00129 * 287.04597 * 8 6 5 11 11 N 1.31516 * 119.99758 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 120.00224 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47042 * 59.99942 * 12 10 8 14 14 H 1.48498 * 109.47298 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47121 * 299.99708 * 12 10 8 16 16 C 1.46764 * 124.34744 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.24598 * 77.93314 * 16 2 1 18 18 C 1.52990 * 110.24736 * 316.01913 * 16 2 1 19 19 C 1.53003 * 109.47382 * 70.12072 * 18 16 2 20 20 C 1.52999 * 109.47280 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.47007 * 300.00096 * 20 19 18 22 22 C 1.52993 * 109.47242 * 60.00219 * 21 20 19 23 23 C 1.53002 * 109.47297 * 299.99838 * 22 21 20 24 24 H 1.09000 * 109.47412 * 263.98668 * 1 2 3 25 25 H 1.09003 * 109.46750 * 23.98510 * 1 2 3 26 26 H 1.09000 * 109.47380 * 143.98074 * 1 2 3 27 27 H 1.08999 * 110.48698 * 225.00063 * 5 3 2 28 28 H 1.08996 * 110.59262 * 102.41230 * 5 3 2 29 29 H 0.97001 * 119.99922 * 180.02562 * 11 10 8 30 30 H 1.09007 * 109.47445 * 310.12565 * 18 16 2 31 31 H 1.09001 * 109.47050 * 300.00263 * 19 18 16 32 32 H 1.08999 * 109.46583 * 60.00216 * 19 18 16 33 33 H 1.09003 * 109.47110 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.47553 * 60.00149 * 20 19 18 35 35 H 1.09003 * 109.47183 * 299.99833 * 21 20 19 36 36 H 1.09001 * 109.47244 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47113 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47346 * 59.99715 * 22 21 20 39 39 H 1.09003 * 109.46822 * 300.00198 * 23 22 21 40 40 H 1.08993 * 109.47283 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1098 0.0000 4 8 1.7983 2.2448 -0.0070 5 6 3.6919 0.7363 0.0089 6 6 3.7019 -0.7499 0.4354 7 1 4.4751 -1.3039 -0.0969 8 6 3.8773 -0.8819 1.9263 9 1 3.0423 -1.1776 2.5442 10 6 5.1038 -0.6252 2.5016 11 7 6.1207 -0.2656 1.7491 12 14 5.3211 -0.7882 4.3497 13 1 5.0155 -2.1813 4.7631 14 1 6.7228 -0.4604 4.7142 15 1 4.3978 0.1471 5.0411 16 6 2.2930 -1.2117 0.0005 17 1 2.3293 -1.6442 -0.9993 18 6 1.7390 -2.2312 0.9977 19 6 0.4160 -2.7919 0.4721 20 6 -0.1383 -3.8109 1.4696 21 6 0.8658 -4.9520 1.6441 22 6 2.1887 -4.3914 2.1699 23 6 2.7431 -3.3723 1.1723 24 1 -0.3634 -0.1077 1.0220 25 1 -0.3633 0.9390 -0.4178 26 1 -0.3634 -0.8312 -0.6043 27 1 4.2361 1.3443 0.7316 28 1 4.1227 0.8507 -0.9858 29 1 6.9836 -0.0854 2.1538 30 1 1.5712 -1.7451 1.9589 31 1 -0.2995 -1.9790 0.3481 32 1 0.5838 -3.2779 -0.4890 33 1 -1.0806 -4.2107 1.0949 34 1 -0.3062 -3.3246 2.4305 35 1 1.0336 -5.4385 0.6832 36 1 0.4707 -5.6783 2.3545 37 1 2.9039 -5.2044 2.2946 38 1 2.0209 -3.9049 3.1308 39 1 2.9109 -3.8588 0.2114 40 1 3.6858 -2.9732 1.5467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710005728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:10 Heat of formation + Delta-G solvation = -63.989756 kcal Electronic energy + Delta-G solvation = -20091.021461 eV Core-core repulsion = 17290.225169 eV Total energy + Delta-G solvation = -2800.796292 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61444 -39.26300 -37.12388 -35.25623 -33.03422 -32.14240 -31.24359 -28.14292 -27.37418 -26.06672 -23.44114 -22.80238 -21.36462 -20.64072 -20.06067 -18.51266 -17.48773 -16.81567 -16.43916 -16.07720 -15.93776 -15.07027 -14.89645 -14.70178 -14.49984 -14.07301 -13.86441 -13.74933 -13.38774 -13.20108 -12.93106 -12.79192 -12.65268 -12.52529 -12.38898 -12.10539 -11.80857 -11.70814 -11.50187 -11.24868 -10.89600 -10.73297 -10.61690 -10.39730 -10.32611 -9.46267 -8.09612 -6.12388 1.42655 1.45624 1.49890 1.71571 2.31836 2.45501 3.22449 3.75527 3.90869 4.02438 4.07788 4.27107 4.39652 4.49198 4.54909 4.58721 4.66568 4.68540 4.76596 4.79367 4.84573 4.87298 4.93401 4.97642 5.04615 5.22786 5.33468 5.40886 5.43444 5.47587 5.53329 5.61305 5.64743 5.77837 5.85274 5.92430 5.99234 6.29766 6.36426 6.91136 7.34672 7.51139 8.99432 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.011740 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.382055 B = 2384.492249 C = 3729.268154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.606 5.606 3 C 0.516 3.484 4 O -0.600 6.600 5 C -0.139 4.139 6 C 0.049 3.951 7 H 0.042 0.958 8 C -0.499 4.499 9 H 0.068 0.932 10 C 0.021 3.979 11 N -0.916 5.916 12 Si 0.933 3.067 13 H -0.264 1.264 14 H -0.291 1.291 15 H -0.283 1.283 16 C 0.142 3.858 17 H 0.077 0.923 18 C -0.065 4.065 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.116 4.116 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.259 0.741 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 -9.981 -2.598 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.338 5.338 3 C 0.306 3.694 4 O -0.484 6.484 5 C -0.180 4.180 6 C 0.030 3.970 7 H 0.060 0.940 8 C -0.537 4.537 9 H 0.086 0.914 10 C -0.179 4.179 11 N -0.555 5.555 12 Si 0.761 3.239 13 H -0.189 1.189 14 H -0.217 1.217 15 H -0.209 1.209 16 C 0.040 3.960 17 H 0.095 0.905 18 C -0.084 4.084 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.154 4.154 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.777 -9.393 -2.592 14.529 hybrid contribution 0.794 0.484 1.146 1.475 sum -9.983 -8.909 -1.446 13.458 Atomic orbital electron populations 1.21947 0.77942 1.03289 1.02260 1.48315 1.06787 1.07166 1.71547 1.21424 0.90765 0.83881 0.73287 1.90550 1.80166 1.23088 1.54548 1.22352 0.91432 1.02729 1.01468 1.19638 0.91582 0.89641 0.96168 0.93963 1.21298 0.95593 1.44525 0.92266 0.91427 1.25540 0.96262 0.95384 1.00681 1.70032 1.01713 1.47444 1.36316 0.85979 0.76554 0.78896 0.82502 1.18871 1.21701 1.20940 1.22005 0.90937 0.84354 0.98746 0.90528 1.21094 0.95251 0.94513 0.97582 1.22167 0.96504 0.99390 0.99143 1.21483 0.98459 0.96128 0.99002 1.21520 0.94753 0.97541 1.01263 1.21485 0.97419 0.98104 0.98333 1.21669 0.99804 0.94926 0.99019 0.92441 0.91964 0.87475 0.91459 0.90126 0.93171 0.92753 0.89968 0.91373 0.90590 0.93155 0.91539 0.91637 0.92277 0.93766 0.92547 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.44 8.95 127.77 1.14 3.59 16 2 N -0.61 -22.41 3.19 -818.65 -2.61 -25.02 16 3 C 0.52 23.45 8.03 87.88 0.71 24.15 16 4 O -0.60 -30.65 17.52 -3.04 -0.05 -30.71 16 5 C -0.14 -6.49 6.19 30.59 0.19 -6.30 16 6 C 0.05 2.17 2.14 -10.47 -0.02 2.14 16 7 H 0.04 2.01 8.12 -2.39 -0.02 1.99 16 8 C -0.50 -24.34 5.59 25.60 0.14 -24.19 16 9 H 0.07 3.27 5.25 -2.91 -0.02 3.25 16 10 C 0.02 1.07 5.23 84.66 0.44 1.51 16 11 N -0.92 -50.22 12.86 21.45 0.28 -49.95 16 12 Si 0.93 42.06 29.54 68.60 2.03 44.08 16 13 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 C 0.14 5.05 2.87 45.45 0.13 5.18 16 17 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.07 -2.06 1.16 -10.79 -0.01 -2.07 16 19 C -0.14 -3.17 4.71 30.59 0.14 -3.03 16 20 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 21 C -0.11 -2.44 5.92 30.59 0.18 -2.25 16 22 C -0.12 -3.18 5.92 30.59 0.18 -3.00 16 23 C -0.12 -3.73 4.60 30.60 0.14 -3.59 16 24 H 0.06 1.57 7.89 -2.39 -0.02 1.55 16 25 H 0.06 1.83 7.80 -2.39 -0.02 1.81 16 26 H 0.11 2.28 5.99 -2.39 -0.01 2.26 16 27 H 0.07 3.60 7.48 -2.39 -0.02 3.58 16 28 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 29 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.05 2.02 6.34 -2.38 -0.02 2.00 16 31 H 0.08 1.77 3.79 -2.39 -0.01 1.76 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.97 5.28 -2.39 -0.01 2.95 16 Total: -1.00 -60.21 299.33 4.20 -56.01 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.01 Total: 15.65 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 3.55 Total: -10.06 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.33 Total: -74.97 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -60.21 4.20 -56.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710005728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.979 kcal (2) G-P(sol) polarization free energy of solvation -60.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds