Wall clock time and date at job start Mon Mar 30 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46882 * 2 1 4 4 H 1.08999 * 109.47363 * 54.92402 * 3 2 1 5 5 C 1.50709 * 109.47193 * 294.92895 * 3 2 1 6 6 H 1.07994 * 119.99792 * 275.60456 * 5 3 2 7 7 C 1.37873 * 119.99787 * 95.59971 * 5 3 2 8 8 N 1.31508 * 120.00448 * 8.77939 * 7 5 3 9 9 Si 1.86800 * 119.99695 * 188.77054 * 7 5 3 10 10 H 1.48507 * 109.46961 * 90.00457 * 9 7 5 11 11 H 1.48504 * 109.47397 * 210.00358 * 9 7 5 12 12 H 1.48494 * 109.47362 * 330.00789 * 9 7 5 13 13 N 1.46900 * 109.47206 * 174.93057 * 3 2 1 14 14 C 1.46899 * 110.99965 * 56.11798 * 13 3 2 15 15 C 1.46901 * 110.99724 * 292.16616 * 13 3 2 16 16 H 1.08999 * 109.47115 * 62.31052 * 15 13 3 17 17 C 1.53006 * 109.46986 * 302.31116 * 15 13 3 18 18 C 1.50701 * 109.47019 * 182.31408 * 15 13 3 19 19 C 1.34664 * 125.98690 * 204.71283 * 18 15 13 20 20 N 1.36886 * 106.81647 * 179.84753 * 19 18 15 21 21 C 1.46497 * 126.39724 * 180.12296 * 20 19 18 22 22 C 1.35042 * 107.20162 * 0.41401 * 20 19 18 23 23 N 1.30493 * 108.70274 * 359.74057 * 22 20 19 24 24 H 1.09007 * 109.47077 * 173.73340 * 1 2 3 25 25 H 1.08994 * 109.47178 * 293.72461 * 1 2 3 26 26 H 1.08993 * 109.47587 * 53.72882 * 1 2 3 27 27 H 1.09001 * 109.47234 * 240.00415 * 2 1 3 28 28 H 1.08997 * 109.47299 * 119.99900 * 2 1 3 29 29 H 0.97000 * 120.00228 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47377 * 60.00600 * 14 13 3 31 31 H 1.08998 * 109.47020 * 299.99931 * 14 13 3 32 32 H 1.09001 * 109.46707 * 180.02562 * 14 13 3 33 33 H 1.08999 * 109.47142 * 299.99920 * 17 15 13 34 34 H 1.08997 * 109.46975 * 59.99792 * 17 15 13 35 35 H 1.09003 * 109.47094 * 180.02562 * 17 15 13 36 36 H 1.08002 * 126.59665 * 359.96596 * 19 18 15 37 37 H 1.09001 * 109.47471 * 270.32020 * 21 20 19 38 38 H 1.08997 * 109.47445 * 30.32048 * 21 20 19 39 39 H 1.09001 * 109.47394 * 150.32097 * 21 20 19 40 40 H 1.08002 * 125.64952 * 179.72120 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9819 0.8410 5 6 1.6427 2.1158 -1.2885 6 1 2.2554 1.9988 -2.1701 7 6 0.4971 2.8810 -1.3418 8 7 -0.1550 3.1666 -0.2360 9 14 -0.1288 3.5123 -2.9847 10 1 -1.0628 2.5191 -3.5733 11 1 -0.8394 4.8005 -2.7819 12 1 1.0181 3.7193 -3.9049 13 7 3.5038 1.4444 0.1224 14 6 4.1224 0.6473 -0.9453 15 6 3.9220 0.9653 1.4466 16 1 3.5954 -0.0661 1.5796 17 6 3.2913 1.8435 2.5293 18 6 5.4235 1.0349 1.5549 19 6 6.1935 0.2887 2.3697 20 7 7.4896 0.6689 2.1475 21 6 8.6798 0.1270 2.8077 22 6 7.4655 1.6412 1.2106 23 7 6.2266 1.8548 0.8609 24 1 -0.3633 -1.0216 -0.1122 25 1 -0.3633 0.4134 0.9408 26 1 -0.3634 0.6079 -0.8284 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.9608 3.7053 -0.2735 30 1 3.8523 1.0664 -1.9145 31 1 3.7678 -0.3814 -0.8826 32 1 5.2062 0.6653 -0.8307 33 1 3.6178 2.8749 2.3963 34 1 2.2053 1.7932 2.4509 35 1 3.6019 1.4883 3.5118 36 1 5.8539 -0.4660 3.0636 37 1 8.8886 0.7022 3.7097 38 1 8.5048 -0.9153 3.0739 39 1 9.5317 0.1910 2.1307 40 1 8.3287 2.1569 0.8164 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710125156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:36 Heat of formation + Delta-G solvation = 76.463934 kcal Electronic energy + Delta-G solvation = -19316.249736 eV Core-core repulsion = 16553.836724 eV Total energy + Delta-G solvation = -2762.413012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.77775 -37.57722 -34.15035 -32.82379 -31.18310 -30.29414 -28.56393 -27.01222 -26.14904 -24.27324 -23.10754 -21.93741 -20.87436 -19.79682 -18.18637 -16.76250 -16.16169 -15.53823 -14.98825 -14.31340 -14.21735 -13.69647 -13.64431 -13.29301 -13.10988 -12.82466 -12.79037 -12.29279 -12.13716 -11.58512 -11.34122 -10.86436 -10.81633 -10.71726 -10.61362 -10.45122 -10.20258 -10.12899 -9.67902 -9.47728 -9.21941 -9.00718 -8.72569 -8.21342 -8.02902 -6.75511 -5.87869 -3.85460 2.28941 2.95604 3.40077 3.47123 3.51611 3.56080 4.54446 4.60333 4.88725 4.95252 5.03156 5.16947 5.20461 5.52920 5.54943 5.92568 6.09565 6.13883 6.33400 6.41850 6.44153 6.49157 6.54832 6.65456 6.70835 6.77358 6.96531 7.04494 7.06115 7.11807 7.25555 7.42235 7.44092 7.70553 7.76636 8.02806 8.28067 8.53406 8.69229 8.88532 9.21542 9.74899 11.21104 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.005697 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.213839 B = 4913.789703 C = 5195.460844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C 0.193 3.807 4 H 0.081 0.919 5 C -0.488 4.488 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.509 5.509 14 C 0.040 3.960 15 C 0.157 3.843 16 H 0.037 0.963 17 C -0.135 4.135 18 C 0.036 3.964 19 C -0.074 4.074 20 N -0.471 5.471 21 C 0.077 3.923 22 C 0.164 3.836 23 N -0.453 5.453 24 H 0.014 0.986 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.021 0.979 29 H 0.258 0.742 30 H 0.065 0.935 31 H 0.003 0.997 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.167 0.833 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.869 -7.152 7.091 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.182 4.182 3 C 0.087 3.913 4 H 0.098 0.902 5 C -0.526 4.526 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.232 5.232 14 C -0.108 4.108 15 C 0.047 3.953 16 H 0.055 0.945 17 C -0.193 4.193 18 C -0.094 4.094 19 C -0.206 4.206 20 N -0.157 5.157 21 C -0.066 4.066 22 C -0.118 4.118 23 N -0.170 5.170 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.185 0.815 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.742 -6.031 6.594 16.391 hybrid contribution -0.213 -1.152 -0.149 1.181 sum 13.528 -7.182 6.444 16.617 Atomic orbital electron populations 1.21467 0.96128 0.97635 1.02807 1.22242 0.96656 1.01732 0.97558 1.19782 0.81153 0.90492 0.99845 0.90151 1.20989 1.06891 1.29378 0.95390 0.92628 1.24856 0.97294 0.95301 0.95905 1.69934 1.18385 1.38673 1.25930 0.86705 0.78963 0.78094 0.84889 1.20914 1.21448 1.19960 1.62457 1.10970 1.51147 0.98630 1.22178 0.98002 0.93953 0.96717 1.19864 0.86142 0.96291 0.92985 0.94516 1.21809 1.01481 1.00505 0.95496 1.20833 0.96232 0.95877 0.96468 1.22332 0.83169 1.07166 1.07894 1.45372 1.06735 1.30937 1.32614 1.21922 0.86388 1.00017 0.98247 1.25126 0.98046 0.94297 0.94314 1.70369 0.99147 1.23178 1.24305 0.96679 0.93874 0.91029 0.94059 0.96066 0.93172 0.91620 0.97822 0.93205 0.91952 0.91179 0.94014 0.81548 0.91039 0.90143 0.89840 0.78459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.47 37.16 0.35 -2.46 16 2 C -0.14 -3.27 4.60 -26.73 -0.12 -3.40 16 3 C 0.19 4.89 1.74 -68.86 -0.12 4.77 16 4 H 0.08 2.23 4.90 -51.93 -0.25 1.98 16 5 C -0.49 -13.55 7.55 -34.44 -0.26 -13.81 16 6 H 0.06 1.58 6.25 -52.49 -0.33 1.25 16 7 C 0.07 1.89 4.08 -17.82 -0.07 1.82 16 8 N -0.89 -25.42 12.33 55.43 0.68 -24.74 16 9 Si 0.89 21.77 29.55 -169.99 -5.02 16.75 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.51 -11.90 4.46 -229.68 -1.02 -12.92 16 14 C 0.04 0.88 8.55 60.06 0.51 1.40 16 15 C 0.16 3.15 2.25 -68.86 -0.15 3.00 16 16 H 0.04 0.73 6.54 -51.93 -0.34 0.39 16 17 C -0.14 -2.62 8.89 37.16 0.33 -2.29 16 18 C 0.04 0.65 4.93 -82.85 -0.41 0.24 16 19 C -0.07 -1.07 11.49 -16.56 -0.19 -1.26 16 20 N -0.47 -5.70 3.15 -126.00 -0.40 -6.10 16 21 C 0.08 0.52 11.18 59.85 0.67 1.19 16 22 C 0.16 2.30 12.56 -90.38 -1.14 1.17 16 23 N -0.45 -8.53 9.80 -10.88 -0.11 -8.63 16 24 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.82 6.06 -51.93 -0.31 1.50 16 27 H 0.04 0.95 6.65 -51.93 -0.35 0.61 16 28 H 0.02 0.45 6.45 -51.93 -0.33 0.11 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.07 1.53 6.36 -51.93 -0.33 1.20 16 31 H 0.00 0.07 6.35 -51.93 -0.33 -0.26 16 32 H 0.05 1.05 6.04 -51.93 -0.31 0.74 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.46 6.20 -51.93 -0.32 1.14 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.17 1.95 8.06 -52.49 -0.42 1.52 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -32.12 311.12 -7.93 -40.05 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.15 Total: 0.55 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.60 Total: -9.64 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.84 Total: -52.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.12 -7.93 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710125156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.512 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds