Wall clock time and date at job start Mon Mar 30 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46882 * 2 1 4 4 H 1.08999 * 109.47363 * 54.92402 * 3 2 1 5 5 C 1.50709 * 109.47193 * 294.92895 * 3 2 1 6 6 H 1.07994 * 119.99792 * 275.60456 * 5 3 2 7 7 C 1.37873 * 119.99787 * 95.59971 * 5 3 2 8 8 N 1.31508 * 120.00448 * 8.77939 * 7 5 3 9 9 Si 1.86800 * 119.99695 * 188.77054 * 7 5 3 10 10 H 1.48507 * 109.46961 * 90.00457 * 9 7 5 11 11 H 1.48504 * 109.47397 * 210.00358 * 9 7 5 12 12 H 1.48494 * 109.47362 * 330.00789 * 9 7 5 13 13 N 1.46900 * 109.47206 * 174.93057 * 3 2 1 14 14 C 1.46899 * 110.99965 * 56.11798 * 13 3 2 15 15 C 1.46901 * 110.99724 * 292.16616 * 13 3 2 16 16 H 1.08999 * 109.47115 * 62.31052 * 15 13 3 17 17 C 1.53006 * 109.46986 * 302.31116 * 15 13 3 18 18 C 1.50701 * 109.47019 * 182.31408 * 15 13 3 19 19 C 1.34664 * 125.98690 * 204.71283 * 18 15 13 20 20 N 1.36886 * 106.81647 * 179.84753 * 19 18 15 21 21 C 1.46497 * 126.39724 * 180.12296 * 20 19 18 22 22 C 1.35042 * 107.20162 * 0.41401 * 20 19 18 23 23 N 1.30493 * 108.70274 * 359.74057 * 22 20 19 24 24 H 1.09007 * 109.47077 * 173.73340 * 1 2 3 25 25 H 1.08994 * 109.47178 * 293.72461 * 1 2 3 26 26 H 1.08993 * 109.47587 * 53.72882 * 1 2 3 27 27 H 1.09001 * 109.47234 * 240.00415 * 2 1 3 28 28 H 1.08997 * 109.47299 * 119.99900 * 2 1 3 29 29 H 0.97000 * 120.00228 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47377 * 60.00600 * 14 13 3 31 31 H 1.08998 * 109.47020 * 299.99931 * 14 13 3 32 32 H 1.09001 * 109.46707 * 180.02562 * 14 13 3 33 33 H 1.08999 * 109.47142 * 299.99920 * 17 15 13 34 34 H 1.08997 * 109.46975 * 59.99792 * 17 15 13 35 35 H 1.09003 * 109.47094 * 180.02562 * 17 15 13 36 36 H 1.08002 * 126.59665 * 359.96596 * 19 18 15 37 37 H 1.09001 * 109.47471 * 270.32020 * 21 20 19 38 38 H 1.08997 * 109.47445 * 30.32048 * 21 20 19 39 39 H 1.09001 * 109.47394 * 150.32097 * 21 20 19 40 40 H 1.08002 * 125.64952 * 179.72120 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9819 0.8410 5 6 1.6427 2.1158 -1.2885 6 1 2.2554 1.9988 -2.1701 7 6 0.4971 2.8810 -1.3418 8 7 -0.1550 3.1666 -0.2360 9 14 -0.1288 3.5123 -2.9847 10 1 -1.0628 2.5191 -3.5733 11 1 -0.8394 4.8005 -2.7819 12 1 1.0181 3.7193 -3.9049 13 7 3.5038 1.4444 0.1224 14 6 4.1224 0.6473 -0.9453 15 6 3.9220 0.9653 1.4466 16 1 3.5954 -0.0661 1.5796 17 6 3.2913 1.8435 2.5293 18 6 5.4235 1.0349 1.5549 19 6 6.1935 0.2887 2.3697 20 7 7.4896 0.6689 2.1475 21 6 8.6798 0.1270 2.8077 22 6 7.4655 1.6412 1.2106 23 7 6.2266 1.8548 0.8609 24 1 -0.3633 -1.0216 -0.1122 25 1 -0.3633 0.4134 0.9408 26 1 -0.3634 0.6079 -0.8284 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.9608 3.7053 -0.2735 30 1 3.8523 1.0664 -1.9145 31 1 3.7678 -0.3814 -0.8826 32 1 5.2062 0.6653 -0.8307 33 1 3.6178 2.8749 2.3963 34 1 2.2053 1.7932 2.4509 35 1 3.6019 1.4883 3.5118 36 1 5.8539 -0.4660 3.0636 37 1 8.8886 0.7022 3.7097 38 1 8.5048 -0.9153 3.0739 39 1 9.5317 0.1910 2.1307 40 1 8.3287 2.1569 0.8164 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710125156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:36 Heat of formation + Delta-G solvation = 56.630845 kcal Electronic energy + Delta-G solvation = -19317.109763 eV Core-core repulsion = 16553.836724 eV Total energy + Delta-G solvation = -2763.273039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.86806 -39.32597 -35.56791 -34.33008 -33.03039 -31.97659 -29.77538 -28.51880 -27.46830 -26.13498 -24.80828 -23.55140 -21.92989 -21.33427 -19.77186 -18.36269 -17.67453 -16.73678 -16.45553 -16.13746 -15.69989 -15.33396 -15.02817 -14.74600 -14.42184 -14.29705 -13.90217 -13.69957 -13.38388 -13.31581 -12.95543 -12.78416 -12.65442 -12.49735 -12.34844 -12.20530 -12.14166 -11.89307 -11.58303 -11.12759 -10.78797 -10.54860 -10.32505 -10.24506 -9.17502 -8.53370 -8.00856 -6.04369 1.24448 1.43050 1.44871 1.54148 2.11236 2.35179 2.50021 3.21122 3.59931 3.81343 4.10287 4.19692 4.30522 4.42486 4.52882 4.53988 4.59632 4.62053 4.75576 4.78031 4.80758 4.85130 4.86092 5.04498 5.11646 5.18589 5.22991 5.35391 5.40392 5.44178 5.53618 5.76021 5.83207 5.86685 5.91142 6.29276 6.48901 6.84677 6.97723 7.07489 7.44334 7.59127 9.07002 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.005697 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.213839 B = 4913.789703 C = 5195.460844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.133 4.133 3 C 0.199 3.801 4 H 0.052 0.948 5 C -0.504 4.504 6 H 0.042 0.958 7 C 0.028 3.972 8 N -0.914 5.914 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.530 5.530 14 C 0.056 3.944 15 C 0.160 3.840 16 H 0.041 0.959 17 C -0.124 4.124 18 C -0.007 4.007 19 C -0.055 4.055 20 N -0.463 5.463 21 C 0.070 3.930 22 C 0.168 3.832 23 N -0.514 5.514 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.259 0.741 30 H 0.043 0.957 31 H 0.010 0.990 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.196 0.804 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.776 -8.619 7.909 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.173 4.173 3 C 0.092 3.908 4 H 0.070 0.930 5 C -0.542 4.542 6 H 0.060 0.940 7 C -0.171 4.171 8 N -0.553 5.553 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.254 5.254 14 C -0.093 4.093 15 C 0.051 3.949 16 H 0.059 0.941 17 C -0.182 4.182 18 C -0.136 4.136 19 C -0.189 4.189 20 N -0.146 5.146 21 C -0.071 4.071 22 C -0.115 4.115 23 N -0.232 5.232 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.212 0.788 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 15.684 -7.517 7.424 18.910 hybrid contribution -0.667 -0.708 -0.331 1.027 sum 15.017 -8.224 7.093 18.533 Atomic orbital electron populations 1.21354 0.95986 0.98807 1.01050 1.22090 0.96670 1.00370 0.98197 1.19534 0.82549 0.91209 0.97482 0.92993 1.21218 1.07046 1.29898 0.96069 0.93980 1.25445 0.97415 0.95583 0.98637 1.70041 1.18634 1.39264 1.27407 0.85848 0.78337 0.77723 0.81442 1.19984 1.21155 1.20172 1.62271 1.09747 1.52581 1.00755 1.21988 0.98291 0.93725 0.95280 1.19813 0.88239 0.96047 0.90845 0.94099 1.21705 0.99849 0.99192 0.97465 1.20590 0.95288 0.98460 0.99304 1.22621 0.83684 1.06108 1.06518 1.45638 1.07464 1.29792 1.31665 1.22320 0.84798 1.00954 0.99011 1.25661 0.97562 0.94257 0.93993 1.70219 1.01337 1.25104 1.26554 0.93628 0.94821 0.93826 0.94220 0.94290 0.93224 0.93860 0.97213 0.92411 0.94544 0.93460 0.90631 0.78752 0.89500 0.88485 0.87561 0.75185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.22 9.47 71.98 0.68 -4.54 16 2 C -0.13 -6.15 4.60 30.59 0.14 -6.01 16 3 C 0.20 10.33 1.74 44.17 0.08 10.41 16 4 H 0.05 3.00 4.90 -2.39 -0.01 2.99 16 5 C -0.50 -28.79 7.55 25.60 0.19 -28.60 16 6 H 0.04 2.47 6.25 -2.91 -0.02 2.45 16 7 C 0.03 1.61 4.08 84.65 0.35 1.96 16 8 N -0.91 -53.51 12.33 21.44 0.26 -53.24 16 9 Si 0.94 45.45 29.55 68.60 2.03 47.48 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 N -0.53 -25.33 4.46 -880.57 -3.93 -29.26 16 14 C 0.06 2.49 8.55 127.69 1.09 3.58 16 15 C 0.16 6.42 2.25 44.17 0.10 6.52 16 16 H 0.04 1.58 6.54 -2.39 -0.02 1.57 16 17 C -0.12 -4.90 8.89 71.98 0.64 -4.26 16 18 C -0.01 -0.26 4.93 41.39 0.20 -0.06 16 19 C -0.06 -1.44 11.49 83.08 0.95 -0.49 16 20 N -0.46 -9.61 3.15 -552.54 -1.74 -11.35 16 21 C 0.07 0.62 11.18 127.77 1.43 2.04 16 22 C 0.17 4.34 12.56 180.26 2.26 6.60 16 23 N -0.51 -19.04 9.80 -188.32 -1.84 -20.89 16 24 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 2.22 6.06 -2.39 -0.01 2.21 16 27 H 0.04 1.82 6.65 -2.39 -0.02 1.80 16 28 H 0.04 1.64 6.45 -2.39 -0.02 1.62 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.04 2.07 6.36 -2.39 -0.02 2.05 16 31 H 0.01 0.41 6.35 -2.39 -0.02 0.39 16 32 H 0.06 2.46 6.04 -2.39 -0.01 2.45 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 2.04 6.20 -2.39 -0.01 2.02 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.20 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.23 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -71.86 311.12 3.92 -67.94 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.02 Total: 12.16 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 8.12 Total: -12.84 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -7.25 Total: -114.74 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -71.86 3.92 -67.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710125156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.575 kcal (2) G-P(sol) polarization free energy of solvation -71.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds