Wall clock time and date at job start Mon Mar 30 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46708 * 2 1 4 4 H 1.08997 * 109.47545 * 58.16900 * 3 2 1 5 5 C 1.50698 * 109.46830 * 178.17433 * 3 2 1 6 6 H 1.08002 * 120.00500 * 114.85890 * 5 3 2 7 7 C 1.37885 * 119.99655 * 294.85980 * 5 3 2 8 8 N 1.31520 * 119.99767 * 168.75720 * 7 5 3 9 9 Si 1.86798 * 119.99997 * 348.74959 * 7 5 3 10 10 H 1.48503 * 109.47095 * 270.18986 * 9 7 5 11 11 H 1.48493 * 109.47088 * 30.19118 * 9 7 5 12 12 H 1.48503 * 109.46821 * 150.18974 * 9 7 5 13 13 N 1.46897 * 109.47198 * 298.16767 * 3 2 1 14 14 C 1.46910 * 111.00237 * 297.69011 * 13 3 2 15 15 C 1.46897 * 111.00383 * 173.73419 * 13 3 2 16 16 H 1.09002 * 109.46880 * 65.38467 * 15 13 3 17 17 C 1.53007 * 109.46903 * 305.38941 * 15 13 3 18 18 C 1.50697 * 109.47840 * 185.38645 * 15 13 3 19 19 C 1.34666 * 125.99548 * 204.71697 * 18 15 13 20 20 N 1.36877 * 106.81837 * 179.84539 * 19 18 15 21 21 C 1.46505 * 126.39804 * 180.11477 * 20 19 18 22 22 C 1.35046 * 107.20608 * 0.41672 * 20 19 18 23 23 N 1.30494 * 108.70021 * 359.73504 * 22 20 19 24 24 H 1.09006 * 109.47195 * 185.08326 * 1 2 3 25 25 H 1.09001 * 109.46963 * 305.07858 * 1 2 3 26 26 H 1.08998 * 109.47430 * 65.08328 * 1 2 3 27 27 H 1.08997 * 109.47038 * 240.00097 * 2 1 3 28 28 H 1.09000 * 109.46967 * 119.99941 * 2 1 3 29 29 H 0.96995 * 119.99495 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.46920 * 59.99998 * 14 13 3 31 31 H 1.09004 * 109.46950 * 179.97438 * 14 13 3 32 32 H 1.08997 * 109.46758 * 300.00010 * 14 13 3 33 33 H 1.08999 * 109.46697 * 306.70909 * 17 15 13 34 34 H 1.09000 * 109.47192 * 66.70789 * 17 15 13 35 35 H 1.09000 * 109.46951 * 186.71149 * 17 15 13 36 36 H 1.08000 * 126.58981 * 359.95790 * 19 18 15 37 37 H 1.08992 * 109.47569 * 270.32643 * 21 20 19 38 38 H 1.09004 * 109.46386 * 30.32738 * 21 20 19 39 39 H 1.08995 * 109.46812 * 150.32376 * 21 20 19 40 40 H 1.08002 * 125.64840 * 179.72681 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6500 1.9658 0.8731 5 6 3.5462 1.4428 0.0453 6 1 4.1116 1.8271 -0.7909 7 6 4.2027 0.9525 1.1543 8 7 5.5008 0.7457 1.1120 9 14 3.2482 0.5820 2.7167 10 1 3.2144 1.7933 3.5750 11 1 1.8610 0.1844 2.3667 12 1 3.9106 -0.5263 3.4503 13 7 1.5867 2.1221 -1.2209 14 6 2.1389 1.4758 -2.4191 15 6 1.9304 3.5499 -1.1873 16 1 3.0145 3.6631 -1.2026 17 6 1.3699 4.1794 0.0896 18 6 1.3366 4.2382 -2.3892 19 6 1.7879 5.3743 -2.9540 20 7 0.9656 5.6432 -4.0146 21 6 1.0718 6.7820 -4.9301 22 6 0.0341 4.6663 -4.0556 23 7 0.2622 3.8295 -3.0806 24 1 -0.3634 -1.0237 0.0911 25 1 -0.3633 0.5906 0.8410 26 1 -0.3634 0.4329 -0.9320 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.9626 0.4011 1.8923 30 1 1.8111 0.4369 -2.4552 31 1 1.7871 1.9985 -3.3086 32 1 3.2276 1.5123 -2.3825 33 1 0.3042 3.9629 0.1638 34 1 1.8860 3.7652 0.9558 35 1 1.5201 5.2586 0.0589 36 1 2.6368 5.9597 -2.6329 37 1 0.4905 7.6174 -4.5399 38 1 2.1168 7.0780 -5.0220 39 1 0.6871 6.4978 -5.9096 40 1 -0.7671 4.5903 -4.7759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710125157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:38 Heat of formation + Delta-G solvation = 79.658310 kcal Electronic energy + Delta-G solvation = -19465.720823 eV Core-core repulsion = 16703.446330 eV Total energy + Delta-G solvation = -2762.274493 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.75603 -37.62800 -34.16723 -32.70510 -31.81342 -30.16005 -28.55592 -27.40861 -26.50676 -24.06227 -23.02996 -21.90304 -20.91785 -19.48152 -18.43173 -16.89506 -16.54066 -15.55748 -15.15591 -14.50902 -14.27712 -13.76717 -13.61622 -13.24227 -13.06910 -12.78533 -12.67531 -12.31004 -12.20306 -11.82551 -11.55750 -11.30817 -10.85261 -10.75924 -10.71641 -10.52946 -10.15639 -10.04419 -9.51980 -9.38571 -9.37235 -9.16357 -8.94584 -8.40351 -8.00527 -6.84776 -6.03758 -4.00078 2.31302 2.97276 3.33657 3.43369 3.47797 3.56249 4.48498 4.62108 4.88693 4.97236 5.05449 5.18206 5.22341 5.29680 5.60065 6.00385 6.11899 6.21550 6.22593 6.28785 6.36008 6.46068 6.52304 6.54173 6.76333 6.82367 6.91097 6.94191 6.97029 7.04524 7.11834 7.20663 7.40565 7.43954 7.50129 7.73469 8.29325 8.41308 8.55899 8.61305 9.02772 9.63526 11.09364 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.006446 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.078861 B = 4342.847786 C = 4667.395794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.179 3.821 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.074 0.926 7 C 0.077 3.923 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.241 1.241 12 H -0.290 1.290 13 N -0.509 5.509 14 C 0.039 3.961 15 C 0.168 3.832 16 H 0.057 0.943 17 C -0.134 4.134 18 C 0.035 3.965 19 C -0.070 4.070 20 N -0.471 5.471 21 C 0.077 3.923 22 C 0.162 3.838 23 N -0.457 5.457 24 H 0.027 0.973 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.169 0.831 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 10.381 -9.425 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.071 3.929 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.536 5.536 9 Si 0.683 3.317 10 H -0.207 1.207 11 H -0.165 1.165 12 H -0.217 1.217 13 N -0.232 5.232 14 C -0.110 4.110 15 C 0.058 3.942 16 H 0.075 0.925 17 C -0.192 4.192 18 C -0.095 4.095 19 C -0.202 4.202 20 N -0.156 5.156 21 C -0.066 4.066 22 C -0.120 4.120 23 N -0.175 5.175 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.186 0.814 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.046 9.689 -9.268 16.754 hybrid contribution 1.156 0.665 0.630 1.475 sum -8.890 10.353 -8.637 16.150 Atomic orbital electron populations 1.21696 0.97719 0.98608 1.01665 1.22022 0.93694 0.99157 1.00925 1.19703 0.93650 0.90550 0.88982 0.94418 1.21645 0.90644 1.41919 1.03865 0.90824 1.24930 0.94552 0.94362 0.98669 1.69978 1.08702 1.45062 1.29866 0.87384 0.82282 0.78135 0.83878 1.20736 1.16525 1.21676 1.62298 1.57962 0.99956 1.02979 1.22150 0.97708 0.98562 0.92557 1.19676 0.96432 0.88990 0.89081 0.92482 1.21787 1.01369 0.98571 0.97471 1.20892 0.95034 0.94392 0.99194 1.22375 1.01211 1.02680 0.93905 1.45351 1.24524 1.21595 1.24110 1.21926 1.03748 0.87777 0.93139 1.25064 0.97014 0.87983 1.01935 1.70322 1.15838 1.26044 1.05295 0.95378 0.94217 0.92051 0.92866 0.92660 0.92911 0.92699 0.93414 0.95318 0.92538 0.91451 0.93716 0.81408 0.91066 0.90048 0.89870 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.70 37.16 0.36 -2.40 16 2 C -0.12 -2.72 4.50 -26.73 -0.12 -2.84 16 3 C 0.18 4.25 0.98 -68.87 -0.07 4.19 16 4 H 0.04 0.92 4.82 -51.93 -0.25 0.67 16 5 C -0.54 -14.88 7.60 -34.44 -0.26 -15.14 16 6 H 0.07 2.22 6.06 -52.49 -0.32 1.90 16 7 C 0.08 2.20 5.39 -17.81 -0.10 2.10 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.86 21.15 25.84 -169.99 -4.39 16.76 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.24 -5.62 5.15 56.52 0.29 -5.33 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.51 -11.09 3.88 -229.68 -0.89 -11.98 16 14 C 0.04 0.84 8.66 60.07 0.52 1.36 16 15 C 0.17 3.41 2.22 -68.86 -0.15 3.25 16 16 H 0.06 1.27 7.14 -51.93 -0.37 0.90 16 17 C -0.13 -2.53 8.54 37.16 0.32 -2.21 16 18 C 0.03 0.62 4.94 -82.85 -0.41 0.21 16 19 C -0.07 -1.04 11.49 -16.56 -0.19 -1.23 16 20 N -0.47 -5.70 3.15 -126.00 -0.40 -6.10 16 21 C 0.08 0.53 11.18 59.85 0.67 1.20 16 22 C 0.16 2.19 12.56 -90.38 -1.14 1.06 16 23 N -0.46 -8.16 10.06 -10.87 -0.11 -8.27 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.22 7.81 -51.93 -0.41 0.82 16 27 H 0.05 1.22 6.36 -51.93 -0.33 0.89 16 28 H 0.06 1.31 4.45 -51.93 -0.23 1.07 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.05 1.16 6.32 -51.93 -0.33 0.84 16 31 H 0.05 0.98 6.32 -51.93 -0.33 0.66 16 32 H 0.03 0.67 6.24 -51.93 -0.32 0.35 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.37 6.60 -51.93 -0.34 1.02 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -32.61 307.55 -7.23 -39.83 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.28 Total: 2.16 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.57 Total: -10.46 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.62 Total: -52.92 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.39 Total: 16.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.61 -7.23 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710125157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.492 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds