Wall clock time and date at job start Mon Mar 30 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46708 * 2 1 4 4 H 1.08997 * 109.47545 * 58.16900 * 3 2 1 5 5 C 1.50698 * 109.46830 * 178.17433 * 3 2 1 6 6 H 1.08002 * 120.00500 * 114.85890 * 5 3 2 7 7 C 1.37885 * 119.99655 * 294.85980 * 5 3 2 8 8 N 1.31520 * 119.99767 * 168.75720 * 7 5 3 9 9 Si 1.86798 * 119.99997 * 348.74959 * 7 5 3 10 10 H 1.48503 * 109.47095 * 270.18986 * 9 7 5 11 11 H 1.48493 * 109.47088 * 30.19118 * 9 7 5 12 12 H 1.48503 * 109.46821 * 150.18974 * 9 7 5 13 13 N 1.46897 * 109.47198 * 298.16767 * 3 2 1 14 14 C 1.46910 * 111.00237 * 297.69011 * 13 3 2 15 15 C 1.46897 * 111.00383 * 173.73419 * 13 3 2 16 16 H 1.09002 * 109.46880 * 65.38467 * 15 13 3 17 17 C 1.53007 * 109.46903 * 305.38941 * 15 13 3 18 18 C 1.50697 * 109.47840 * 185.38645 * 15 13 3 19 19 C 1.34666 * 125.99548 * 204.71697 * 18 15 13 20 20 N 1.36877 * 106.81837 * 179.84539 * 19 18 15 21 21 C 1.46505 * 126.39804 * 180.11477 * 20 19 18 22 22 C 1.35046 * 107.20608 * 0.41672 * 20 19 18 23 23 N 1.30494 * 108.70021 * 359.73504 * 22 20 19 24 24 H 1.09006 * 109.47195 * 185.08326 * 1 2 3 25 25 H 1.09001 * 109.46963 * 305.07858 * 1 2 3 26 26 H 1.08998 * 109.47430 * 65.08328 * 1 2 3 27 27 H 1.08997 * 109.47038 * 240.00097 * 2 1 3 28 28 H 1.09000 * 109.46967 * 119.99941 * 2 1 3 29 29 H 0.96995 * 119.99495 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.46920 * 59.99998 * 14 13 3 31 31 H 1.09004 * 109.46950 * 179.97438 * 14 13 3 32 32 H 1.08997 * 109.46758 * 300.00010 * 14 13 3 33 33 H 1.08999 * 109.46697 * 306.70909 * 17 15 13 34 34 H 1.09000 * 109.47192 * 66.70789 * 17 15 13 35 35 H 1.09000 * 109.46951 * 186.71149 * 17 15 13 36 36 H 1.08000 * 126.58981 * 359.95790 * 19 18 15 37 37 H 1.08992 * 109.47569 * 270.32643 * 21 20 19 38 38 H 1.09004 * 109.46386 * 30.32738 * 21 20 19 39 39 H 1.08995 * 109.46812 * 150.32376 * 21 20 19 40 40 H 1.08002 * 125.64840 * 179.72681 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6500 1.9658 0.8731 5 6 3.5462 1.4428 0.0453 6 1 4.1116 1.8271 -0.7909 7 6 4.2027 0.9525 1.1543 8 7 5.5008 0.7457 1.1120 9 14 3.2482 0.5820 2.7167 10 1 3.2144 1.7933 3.5750 11 1 1.8610 0.1844 2.3667 12 1 3.9106 -0.5263 3.4503 13 7 1.5867 2.1221 -1.2209 14 6 2.1389 1.4758 -2.4191 15 6 1.9304 3.5499 -1.1873 16 1 3.0145 3.6631 -1.2026 17 6 1.3699 4.1794 0.0896 18 6 1.3366 4.2382 -2.3892 19 6 1.7879 5.3743 -2.9540 20 7 0.9656 5.6432 -4.0146 21 6 1.0718 6.7820 -4.9301 22 6 0.0341 4.6663 -4.0556 23 7 0.2622 3.8295 -3.0806 24 1 -0.3634 -1.0237 0.0911 25 1 -0.3633 0.5906 0.8410 26 1 -0.3634 0.4329 -0.9320 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.9626 0.4011 1.8923 30 1 1.8111 0.4369 -2.4552 31 1 1.7871 1.9985 -3.3086 32 1 3.2276 1.5123 -2.3825 33 1 0.3042 3.9629 0.1638 34 1 1.8860 3.7652 0.9558 35 1 1.5201 5.2586 0.0589 36 1 2.6368 5.9597 -2.6329 37 1 0.4905 7.6174 -4.5399 38 1 2.1168 7.0780 -5.0220 39 1 0.6871 6.4978 -5.9096 40 1 -0.7671 4.5903 -4.7759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710125157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:37 Heat of formation + Delta-G solvation = 58.681323 kcal Electronic energy + Delta-G solvation = -19466.630454 eV Core-core repulsion = 16703.446330 eV Total energy + Delta-G solvation = -2763.184123 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.85779 -39.38571 -35.52366 -34.29422 -33.68755 -31.74253 -29.84581 -29.14998 -27.51439 -25.89851 -24.73744 -23.47504 -21.97569 -20.97517 -20.17205 -18.73916 -17.78118 -17.05004 -16.43665 -16.25001 -15.73859 -15.42366 -14.92669 -14.65990 -14.49053 -14.22496 -14.03823 -13.69344 -13.43836 -13.38558 -13.26544 -12.95610 -12.67318 -12.58595 -12.33023 -12.15385 -12.01691 -11.87049 -11.34932 -11.31674 -10.91149 -10.61639 -10.53024 -10.25050 -9.18210 -8.71113 -8.25915 -6.25902 1.24145 1.36432 1.40621 1.50771 2.10467 2.35284 2.39331 3.10247 3.40820 3.80392 4.09090 4.19257 4.33590 4.44131 4.51947 4.53569 4.59617 4.60848 4.73046 4.77025 4.78848 4.84425 4.92258 5.02980 5.12881 5.19519 5.22305 5.28984 5.30047 5.43356 5.47365 5.60119 5.62888 5.72683 5.87569 6.27927 6.46564 6.54886 6.65943 6.83275 7.39839 7.42181 8.90760 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.006446 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.078861 B = 4342.847786 C = 4667.395794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.184 3.816 4 H 0.039 0.961 5 C -0.534 4.534 6 H 0.031 0.969 7 C 0.021 3.979 8 N -0.948 5.948 9 Si 0.916 3.084 10 H -0.276 1.276 11 H -0.216 1.216 12 H -0.291 1.291 13 N -0.502 5.502 14 C 0.054 3.946 15 C 0.169 3.831 16 H 0.023 0.977 17 C -0.125 4.125 18 C -0.002 4.002 19 C -0.064 4.064 20 N -0.463 5.463 21 C 0.070 3.930 22 C 0.172 3.828 23 N -0.504 5.504 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.262 0.738 30 H 0.056 0.944 31 H 0.058 0.942 32 H -0.004 1.004 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.184 0.816 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 11.550 -10.156 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C 0.075 3.925 4 H 0.056 0.944 5 C -0.573 4.573 6 H 0.049 0.951 7 C -0.176 4.176 8 N -0.588 5.588 9 Si 0.740 3.260 10 H -0.202 1.202 11 H -0.138 1.138 12 H -0.218 1.218 13 N -0.225 5.225 14 C -0.095 4.095 15 C 0.059 3.941 16 H 0.041 0.959 17 C -0.183 4.183 18 C -0.131 4.131 19 C -0.198 4.198 20 N -0.146 5.146 21 C -0.071 4.071 22 C -0.111 4.111 23 N -0.223 5.223 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.015 0.985 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.201 0.799 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -12.704 10.893 -10.034 19.512 hybrid contribution 2.011 0.417 0.677 2.163 sum -10.693 11.311 -9.357 18.161 Atomic orbital electron populations 1.21573 0.94903 1.00337 1.01752 1.21962 0.96140 0.97675 1.00151 1.19619 0.90926 0.91832 0.90094 0.94365 1.21833 0.92680 1.40470 1.02302 0.95074 1.25741 0.95327 0.94509 1.02055 1.70120 1.10686 1.47080 1.30914 0.86414 0.82101 0.77989 0.79468 1.20190 1.13830 1.21779 1.62338 1.57168 1.00910 1.02047 1.21996 0.95479 0.98816 0.93172 1.19594 0.94818 0.88245 0.91491 0.95881 1.21700 1.00792 0.99879 0.95902 1.20527 0.96716 0.96086 0.99741 1.22543 1.01437 1.01681 0.94112 1.45597 1.23088 1.22348 1.23573 1.22314 1.05090 0.86449 0.93249 1.25737 0.97312 0.87012 1.01017 1.70180 1.16570 1.28380 1.07148 0.92878 0.93720 0.92298 0.93759 0.93389 0.92912 0.92546 0.92308 0.98537 0.92458 0.93501 0.91366 0.79915 0.89320 0.89069 0.87291 0.74710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.70 71.98 0.70 -4.07 16 2 C -0.12 -5.40 4.50 30.60 0.14 -5.27 16 3 C 0.18 8.82 0.98 44.17 0.04 8.86 16 4 H 0.04 1.86 4.82 -2.39 -0.01 1.85 16 5 C -0.53 -30.53 7.60 25.60 0.19 -30.33 16 6 H 0.03 2.01 6.06 -2.91 -0.02 1.99 16 7 C 0.02 1.25 5.39 84.66 0.46 1.70 16 8 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 9 Si 0.92 43.94 25.84 68.60 1.77 45.71 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.22 -9.39 5.15 99.48 0.51 -8.87 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 N -0.50 -22.22 3.88 -880.58 -3.41 -25.63 16 14 C 0.05 2.41 8.66 127.69 1.11 3.52 16 15 C 0.17 6.98 2.22 44.17 0.10 7.08 16 16 H 0.02 1.10 7.14 -2.39 -0.02 1.08 16 17 C -0.12 -4.71 8.54 71.98 0.61 -4.09 16 18 C 0.00 -0.05 4.94 41.39 0.20 0.15 16 19 C -0.06 -1.79 11.49 83.09 0.95 -0.84 16 20 N -0.46 -9.83 3.15 -552.54 -1.74 -11.57 16 21 C 0.07 0.68 11.18 127.77 1.43 2.10 16 22 C 0.17 4.15 12.56 180.26 2.26 6.42 16 23 N -0.50 -17.30 10.06 -188.32 -1.89 -19.19 16 24 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 2.22 7.81 -2.39 -0.02 2.20 16 27 H 0.04 2.02 6.36 -2.39 -0.02 2.01 16 28 H 0.05 2.19 4.45 -2.39 -0.01 2.18 16 29 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.06 2.44 6.32 -2.39 -0.02 2.42 16 31 H 0.06 2.47 6.32 -2.38 -0.02 2.45 16 32 H 0.00 -0.20 6.24 -2.39 -0.01 -0.21 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.91 6.60 -2.39 -0.02 1.90 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.75 8.14 -2.38 -0.02 0.74 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.24 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -73.58 307.55 4.04 -69.54 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.82 Total: 15.54 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 8.20 Total: -14.77 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -6.75 Total: -116.02 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.77 Total: 45.71 kcal Total: -73.58 4.04 -69.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710125157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.220 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds