Wall clock time and date at job start Mon Mar 30 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47416 * 2 1 4 4 C 1.50701 * 109.46975 * 120.00079 * 2 1 3 5 5 H 1.07999 * 120.00183 * 120.00296 * 4 2 1 6 6 C 1.37872 * 120.00325 * 299.99959 * 4 2 1 7 7 N 1.31520 * 119.99987 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00382 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46771 * 90.00346 * 8 6 4 10 10 H 1.48503 * 109.47241 * 209.99850 * 8 6 4 11 11 H 1.48494 * 109.47054 * 329.99939 * 8 6 4 12 12 N 1.46500 * 109.47142 * 239.99832 * 2 1 3 13 13 C 1.46495 * 120.00469 * 300.00008 * 12 2 1 14 14 C 1.34776 * 119.99651 * 120.00169 * 12 2 1 15 15 O 1.21284 * 120.00352 * 359.97438 * 14 12 2 16 16 C 1.50701 * 120.00127 * 179.97438 * 14 12 2 17 17 C 1.53002 * 109.47591 * 180.02562 * 16 14 12 18 18 H 1.09000 * 115.55766 * 29.29493 * 17 16 14 19 19 C 1.53002 * 117.49773 * 243.61177 * 17 16 14 20 20 C 1.53000 * 60.02940 * 252.51785 * 19 17 16 21 21 H 1.09007 * 117.49605 * 107.50099 * 20 19 17 22 22 C 1.52996 * 117.49997 * 252.49592 * 20 19 17 23 23 C 1.53005 * 117.50055 * 197.23111 * 22 20 19 24 24 C 1.53005 * 59.99993 * 252.51669 * 23 22 20 25 25 H 1.09000 * 109.46586 * 60.00010 * 1 2 3 26 26 H 1.09006 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47145 * 300.00002 * 1 2 3 28 28 H 0.96992 * 120.00537 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47454 * 270.00219 * 13 12 2 30 30 H 1.09005 * 109.47147 * 30.00057 * 13 12 2 31 31 H 1.08996 * 109.47355 * 149.99984 * 13 12 2 32 32 H 1.09007 * 109.47209 * 60.00130 * 16 14 12 33 33 H 1.08996 * 109.47172 * 300.00340 * 16 14 12 34 34 H 1.09002 * 117.49918 * 145.01819 * 19 17 16 35 35 H 1.09002 * 117.49754 * 0.02562 * 19 17 16 36 36 H 1.09001 * 115.55415 * 342.94250 * 22 20 19 37 37 H 1.09004 * 117.49785 * 0.02562 * 23 22 20 38 38 H 1.08998 * 117.49690 * 145.02173 * 23 22 20 39 39 H 1.09002 * 117.49444 * 252.51087 * 24 23 22 40 40 H 1.08991 * 117.52321 * 107.48293 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8296 2.6035 8 14 2.3213 -1.1205 4.0080 9 1 3.6296 -0.5460 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7119 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0859 1.1257 -1.8916 16 6 3.2961 -0.7461 -3.3134 17 6 4.1466 0.2154 -4.1460 18 1 4.6658 0.9914 -3.5836 19 6 3.6418 0.5746 -5.5450 20 6 4.8487 -0.3517 -5.3824 21 1 4.7045 -1.4095 -5.6025 22 6 6.2259 0.2140 -5.7348 23 6 7.3618 -0.7847 -5.9659 24 6 7.3378 0.0657 -4.6942 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7087 1.1612 3.4844 29 1 2.4158 -2.7377 -0.9717 30 1 0.6905 -2.3003 -0.9847 31 1 1.6239 -2.2852 -2.5002 32 1 2.4485 -1.0891 -3.9070 33 1 3.9018 -1.6023 -3.0165 34 1 3.8290 1.5870 -5.9030 35 1 2.7036 0.1262 -5.8720 36 1 6.2211 1.1202 -6.3405 37 1 7.1278 -1.8447 -5.8673 38 1 8.1043 -0.5357 -6.7240 39 1 8.0646 0.8742 -4.6157 40 1 7.0880 -0.4343 -3.7585 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712908759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:53 Heat of formation + Delta-G solvation = 5.257896 kcal Electronic energy + Delta-G solvation = -18504.878416 eV Core-core repulsion = 15707.084928 eV Total energy + Delta-G solvation = -2797.793488 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37604 -38.24315 -35.60242 -35.01201 -32.84129 -30.15594 -28.24509 -26.04911 -25.18080 -23.68181 -22.50441 -21.87721 -20.39681 -19.66991 -18.17925 -16.60768 -16.12441 -15.72816 -15.37510 -14.98938 -14.75707 -14.11246 -13.75312 -13.29507 -12.75433 -12.59107 -12.47326 -11.89790 -11.71752 -11.58445 -11.50627 -11.42901 -11.04283 -10.98593 -10.84596 -10.79917 -10.68465 -10.59038 -10.21561 -10.14283 -9.79190 -9.43768 -9.13884 -8.83443 -8.39827 -7.53474 -6.04903 -4.12828 3.28289 3.34532 3.36073 3.46115 3.55084 3.98163 4.03154 4.41243 4.57618 4.79853 4.86022 5.04388 5.05438 5.25459 5.28274 5.32937 5.46956 5.55882 5.57313 5.74838 5.81224 5.84653 5.89329 5.95961 6.04319 6.10788 6.14291 6.21860 6.32245 6.56089 6.78953 6.85201 7.09103 7.48317 7.56449 7.74793 8.04884 8.23173 8.59209 8.86941 9.13057 9.53885 11.00396 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.004623 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.083283 B = 6054.856987 C = 6452.436728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.596 5.596 13 C 0.087 3.913 14 C 0.505 3.495 15 O -0.552 6.552 16 C -0.110 4.110 17 C -0.122 4.122 18 H 0.120 0.880 19 C -0.170 4.170 20 C -0.127 4.127 21 H 0.103 0.897 22 C -0.122 4.122 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.011 0.989 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 -5.415 -15.032 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.327 5.327 13 C -0.057 4.057 14 C 0.292 3.708 15 O -0.431 6.431 16 C -0.150 4.150 17 C -0.140 4.140 18 H 0.137 0.863 19 C -0.207 4.207 20 C -0.145 4.145 21 H 0.121 0.879 22 C -0.140 4.140 23 C -0.217 4.217 24 C -0.213 4.213 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.002 -4.693 -14.755 16.606 hybrid contribution 0.238 -0.632 0.899 1.124 sum 6.239 -5.325 -13.856 16.102 Atomic orbital electron populations 1.22093 0.98343 0.99283 1.00813 1.18921 0.90801 0.94548 0.80080 0.91925 1.21329 1.31679 1.12924 0.90353 0.92352 1.24898 0.94970 0.95009 0.98954 1.69881 1.36408 1.22702 1.23699 0.86500 0.78646 0.79858 0.82405 1.20624 1.21133 1.19947 1.48233 1.49219 1.11594 1.23683 1.21539 1.01543 0.83352 0.99242 1.20317 0.79091 0.87151 0.84283 1.90629 1.58340 1.17220 1.76929 1.21265 0.99654 0.98577 0.95521 1.22209 1.01314 1.01331 0.89188 0.86254 1.23119 0.97305 0.99997 1.00277 1.21882 0.91138 0.98158 1.03372 0.87903 1.21726 0.88883 1.00280 1.03082 1.22965 1.01256 0.97210 1.00221 1.22972 1.01333 1.02824 0.94156 0.97015 0.95157 0.88832 0.92723 0.93396 0.90962 0.93022 0.89597 0.89272 0.88908 0.88977 0.87905 0.88891 0.89117 0.88992 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.67 2.64 -69.08 -0.18 6.49 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.36 8.37 -34.44 -0.29 -14.65 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.60 -12.86 2.75 -175.27 -0.48 -13.34 16 13 C 0.09 1.47 9.48 59.84 0.57 2.04 16 14 C 0.50 10.53 7.67 -10.99 -0.08 10.45 16 15 O -0.55 -13.80 14.89 5.55 0.08 -13.72 16 16 C -0.11 -1.64 4.53 -27.88 -0.13 -1.77 16 17 C -0.12 -1.74 5.06 -90.58 -0.46 -2.20 16 18 H 0.12 2.03 7.30 -51.93 -0.38 1.65 16 19 C -0.17 -2.04 9.89 -26.73 -0.26 -2.31 16 20 C -0.13 -1.45 5.59 -90.59 -0.51 -1.95 16 21 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 22 C -0.12 -1.29 5.87 -90.62 -0.53 -1.82 16 23 C -0.18 -1.66 10.25 -26.73 -0.27 -1.94 16 24 C -0.18 -1.87 10.18 -26.73 -0.27 -2.14 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 31 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 32 H 0.09 1.10 7.14 -51.93 -0.37 0.73 16 33 H 0.09 1.20 8.11 -51.93 -0.42 0.77 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -30.91 325.92 -8.68 -39.59 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.62 Total: 2.53 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.18 Total: -11.38 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.14 Total: -38.14 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.91 -8.68 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712908759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.852 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds