Wall clock time and date at job start Mon Mar 30 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47416 * 2 1 4 4 C 1.50701 * 109.46975 * 120.00079 * 2 1 3 5 5 H 1.07999 * 120.00183 * 120.00296 * 4 2 1 6 6 C 1.37872 * 120.00325 * 299.99959 * 4 2 1 7 7 N 1.31520 * 119.99987 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00382 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46771 * 90.00346 * 8 6 4 10 10 H 1.48503 * 109.47241 * 209.99850 * 8 6 4 11 11 H 1.48494 * 109.47054 * 329.99939 * 8 6 4 12 12 N 1.46500 * 109.47142 * 239.99832 * 2 1 3 13 13 C 1.46495 * 120.00469 * 300.00008 * 12 2 1 14 14 C 1.34776 * 119.99651 * 120.00169 * 12 2 1 15 15 O 1.21284 * 120.00352 * 359.97438 * 14 12 2 16 16 C 1.50701 * 120.00127 * 179.97438 * 14 12 2 17 17 C 1.53002 * 109.47591 * 180.02562 * 16 14 12 18 18 H 1.09000 * 115.55766 * 29.29493 * 17 16 14 19 19 C 1.53002 * 117.49773 * 243.61177 * 17 16 14 20 20 C 1.53000 * 60.02940 * 252.51785 * 19 17 16 21 21 H 1.09007 * 117.49605 * 107.50099 * 20 19 17 22 22 C 1.52996 * 117.49997 * 252.49592 * 20 19 17 23 23 C 1.53005 * 117.50055 * 197.23111 * 22 20 19 24 24 C 1.53005 * 59.99993 * 252.51669 * 23 22 20 25 25 H 1.09000 * 109.46586 * 60.00010 * 1 2 3 26 26 H 1.09006 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47145 * 300.00002 * 1 2 3 28 28 H 0.96992 * 120.00537 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47454 * 270.00219 * 13 12 2 30 30 H 1.09005 * 109.47147 * 30.00057 * 13 12 2 31 31 H 1.08996 * 109.47355 * 149.99984 * 13 12 2 32 32 H 1.09007 * 109.47209 * 60.00130 * 16 14 12 33 33 H 1.08996 * 109.47172 * 300.00340 * 16 14 12 34 34 H 1.09002 * 117.49918 * 145.01819 * 19 17 16 35 35 H 1.09002 * 117.49754 * 0.02562 * 19 17 16 36 36 H 1.09001 * 115.55415 * 342.94250 * 22 20 19 37 37 H 1.09004 * 117.49785 * 0.02562 * 23 22 20 38 38 H 1.08998 * 117.49690 * 145.02173 * 23 22 20 39 39 H 1.09002 * 117.49444 * 252.51087 * 24 23 22 40 40 H 1.08991 * 117.52321 * 107.48293 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8296 2.6035 8 14 2.3213 -1.1205 4.0080 9 1 3.6296 -0.5460 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7119 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0859 1.1257 -1.8916 16 6 3.2961 -0.7461 -3.3134 17 6 4.1466 0.2154 -4.1460 18 1 4.6658 0.9914 -3.5836 19 6 3.6418 0.5746 -5.5450 20 6 4.8487 -0.3517 -5.3824 21 1 4.7045 -1.4095 -5.6025 22 6 6.2259 0.2140 -5.7348 23 6 7.3618 -0.7847 -5.9659 24 6 7.3378 0.0657 -4.6942 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7087 1.1612 3.4844 29 1 2.4158 -2.7377 -0.9717 30 1 0.6905 -2.3003 -0.9847 31 1 1.6239 -2.2852 -2.5002 32 1 2.4485 -1.0891 -3.9070 33 1 3.9018 -1.6023 -3.0165 34 1 3.8290 1.5870 -5.9030 35 1 2.7036 0.1262 -5.8720 36 1 6.2211 1.1202 -6.3405 37 1 7.1278 -1.8447 -5.8673 38 1 8.1043 -0.5357 -6.7240 39 1 8.0646 0.8742 -4.6157 40 1 7.0880 -0.4343 -3.7585 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712908759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:53 Heat of formation + Delta-G solvation = -11.721744 kcal Electronic energy + Delta-G solvation = -18505.614708 eV Core-core repulsion = 15707.084928 eV Total energy + Delta-G solvation = -2798.529781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85735 -39.34449 -37.16260 -36.21614 -34.79938 -31.91070 -29.69862 -27.56117 -27.27061 -24.59699 -23.52207 -23.17686 -21.73083 -20.64640 -19.79503 -18.51789 -17.75960 -17.20144 -16.57750 -16.37156 -16.23831 -15.63757 -14.86728 -14.62890 -14.34651 -14.25109 -13.80335 -13.46074 -13.23259 -13.01953 -12.93740 -12.70509 -12.60013 -12.46113 -12.29389 -12.17463 -12.09929 -12.05909 -11.72438 -11.48116 -11.18257 -10.72533 -10.66264 -10.48964 -10.25211 -9.29621 -8.14743 -6.31774 1.40524 1.41935 1.51992 1.87071 2.31656 2.48313 2.74449 3.11089 3.12805 3.65212 3.77679 3.88587 4.05471 4.18058 4.26445 4.34208 4.42472 4.57944 4.62384 4.70700 4.72529 4.82896 4.83738 4.85205 4.88714 4.96400 5.04863 5.06311 5.09539 5.27764 5.31130 5.33326 5.45679 5.47836 5.64205 5.68956 6.05160 6.16762 6.76823 6.88770 7.33708 7.53328 8.89565 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.004623 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.083283 B = 6054.856987 C = 6452.436728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.604 5.604 13 C 0.083 3.917 14 C 0.492 3.508 15 O -0.607 6.607 16 C -0.092 4.092 17 C -0.151 4.151 18 H 0.080 0.920 19 C -0.166 4.166 20 C -0.101 4.101 21 H 0.125 0.875 22 C -0.136 4.136 23 C -0.159 4.159 24 C -0.193 4.193 25 H 0.019 0.981 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -8.187 -16.708 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.023 0.977 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.184 1.184 12 N -0.335 5.335 13 C -0.060 4.060 14 C 0.281 3.719 15 O -0.490 6.490 16 C -0.131 4.131 17 C -0.170 4.170 18 H 0.098 0.902 19 C -0.203 4.203 20 C -0.119 4.119 21 H 0.142 0.858 22 C -0.154 4.154 23 C -0.195 4.195 24 C -0.230 4.230 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.388 -7.510 -16.458 19.185 hybrid contribution 0.143 0.298 1.398 1.436 sum 6.532 -7.212 -15.060 17.930 Atomic orbital electron populations 1.21872 0.97179 1.00140 0.99873 1.18512 0.91651 0.92130 0.82037 0.97705 1.21591 1.31819 1.13015 0.91232 0.92192 1.25765 0.95073 0.95677 1.02101 1.70028 1.37351 1.24008 1.24406 0.85446 0.77755 0.79248 0.78513 1.20897 1.20474 1.18448 1.48269 1.49296 1.13467 1.22443 1.21818 1.01405 0.80300 1.02431 1.21464 0.78041 0.86781 0.85566 1.90601 1.60100 1.19974 1.78340 1.21228 1.00884 0.98341 0.92630 1.22022 1.03199 1.01667 0.90112 0.90164 1.23234 0.98567 1.00488 0.97987 1.21957 0.91103 0.99079 0.99785 0.85754 1.21826 0.88932 1.01280 1.03344 1.23058 1.00222 0.97259 0.99009 1.22975 1.01923 1.03776 0.94307 0.96179 0.93211 0.91500 0.92662 0.92739 0.91285 0.88379 0.86310 0.87150 0.89153 0.87188 0.87616 0.87896 0.87546 0.88769 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.95 71.98 0.64 -5.87 16 2 C 0.26 13.87 2.64 44.25 0.12 13.99 16 3 H 0.00 0.32 6.90 -2.39 -0.02 0.30 16 4 C -0.54 -29.90 8.37 25.60 0.21 -29.68 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.74 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.79 16 8 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 12 N -0.60 -25.95 2.75 -826.81 -2.28 -28.23 16 13 C 0.08 2.56 9.48 127.77 1.21 3.77 16 14 C 0.49 20.68 7.67 87.66 0.67 21.35 16 15 O -0.61 -32.07 14.89 -3.04 -0.05 -32.12 16 16 C -0.09 -2.53 4.53 29.85 0.14 -2.39 16 17 C -0.15 -4.20 5.06 -10.77 -0.05 -4.26 16 18 H 0.08 2.88 7.30 -2.39 -0.02 2.87 16 19 C -0.17 -3.65 9.89 30.60 0.30 -3.35 16 20 C -0.10 -2.04 5.59 -10.77 -0.06 -2.10 16 21 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 22 C -0.14 -2.63 5.87 -10.79 -0.06 -2.70 16 23 C -0.16 -2.50 10.25 30.60 0.31 -2.18 16 24 C -0.19 -3.94 10.18 30.60 0.31 -3.63 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 2.20 6.66 -2.38 -0.02 2.18 16 27 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 28 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.18 6.43 -2.38 -0.02 2.17 16 31 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 32 H 0.12 2.51 7.14 -2.38 -0.02 2.49 16 33 H 0.11 2.59 8.11 -2.39 -0.02 2.57 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.11 2.03 8.03 -2.39 -0.02 2.01 16 36 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -71.18 325.92 5.14 -66.04 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.00 Total: 18.30 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 4.19 Total: -15.87 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.03 Total: -82.01 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.18 5.14 -66.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712908759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.315 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds