Wall clock time and date at job start Mon Mar 30 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47444 * 2 1 4 4 C 1.50700 * 109.47480 * 239.99975 * 2 1 3 5 5 H 1.08001 * 120.00172 * 245.46274 * 4 2 1 6 6 C 1.37875 * 120.00095 * 65.45040 * 4 2 1 7 7 N 1.31517 * 119.99699 * 9.62884 * 6 4 2 8 8 Si 1.86806 * 120.00225 * 189.62020 * 6 4 2 9 9 H 1.48495 * 109.47050 * 84.99968 * 8 6 4 10 10 H 1.48500 * 109.47219 * 205.00004 * 8 6 4 11 11 H 1.48501 * 109.46920 * 324.99823 * 8 6 4 12 12 N 1.46500 * 109.46946 * 119.99910 * 2 1 3 13 13 C 1.46500 * 120.00361 * 60.00342 * 12 2 1 14 14 C 1.34777 * 119.99752 * 240.00079 * 12 2 1 15 15 O 1.21279 * 120.00216 * 359.97438 * 14 12 2 16 16 C 1.50702 * 119.99983 * 180.27623 * 14 12 2 17 17 C 1.53001 * 109.47294 * 179.72237 * 16 14 12 18 18 H 1.08996 * 115.54991 * 29.28104 * 17 16 14 19 19 C 1.52995 * 117.50115 * 243.60721 * 17 16 14 20 20 C 1.52999 * 117.49652 * 174.98120 * 17 16 14 21 21 H 1.09002 * 117.49850 * 214.97771 * 20 17 16 22 22 C 1.52997 * 117.50365 * 0.02562 * 20 17 16 23 23 C 1.52996 * 117.50198 * 248.61984 * 22 20 17 24 24 C 1.52995 * 117.50054 * 179.97438 * 22 20 17 25 25 H 1.08993 * 109.47142 * 183.28360 * 1 2 3 26 26 H 1.08996 * 109.47277 * 303.28848 * 1 2 3 27 27 H 1.09000 * 109.46889 * 63.29094 * 1 2 3 28 28 H 0.97007 * 119.99210 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46662 * 270.00367 * 13 12 2 30 30 H 1.09000 * 109.46810 * 29.99177 * 13 12 2 31 31 H 1.08998 * 109.47153 * 149.99880 * 13 12 2 32 32 H 1.08998 * 109.46853 * 299.72375 * 16 14 12 33 33 H 1.09000 * 109.47240 * 59.72247 * 16 14 12 34 34 H 1.09005 * 117.49696 * 0.02562 * 19 17 16 35 35 H 1.09002 * 117.49769 * 144.99785 * 19 17 16 36 36 H 1.09006 * 115.54744 * 34.32782 * 22 20 17 37 37 H 1.09005 * 117.49464 * 359.97438 * 23 22 20 38 38 H 1.08997 * 117.50375 * 145.01543 * 23 22 20 39 39 H 1.09005 * 117.49987 * 214.98100 * 24 22 20 40 40 H 1.08996 * 117.50478 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6371 -1.1338 6 6 1.7945 -0.1775 -2.4796 7 7 1.3003 1.0359 -2.5935 8 14 2.1745 -1.1789 -4.0101 9 1 1.0216 -2.0608 -4.3234 10 1 2.4215 -0.2627 -5.1524 11 1 3.3823 -2.0091 -3.7712 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.3006 -0.7477 3.3107 17 6 4.1551 0.2124 4.1407 18 1 3.8893 1.2665 4.0617 19 6 5.6355 -0.1315 4.3166 20 6 4.6689 -0.2877 5.4923 21 1 4.7411 0.4375 6.3029 22 6 4.2894 -1.7097 5.9103 23 6 3.3227 -1.8663 7.0858 24 6 4.8037 -2.2099 7.2616 25 1 -0.3633 -1.0259 0.0589 26 1 -0.3633 0.5640 0.8590 27 1 -0.3633 0.4619 -0.9180 28 1 1.1333 1.4109 -3.4725 29 1 0.7375 -2.1443 1.9993 30 1 1.5295 -2.5968 0.4709 31 1 2.4629 -2.5818 1.9864 32 1 2.4553 -1.0903 3.9075 33 1 3.9041 -1.6042 3.0103 34 1 6.0008 -1.0416 3.8406 35 1 6.3436 0.6964 4.3533 36 1 4.2179 -2.4347 5.0994 37 1 2.9575 -0.9562 7.5617 38 1 2.6149 -2.6943 7.0486 39 1 5.0699 -3.2640 7.3399 40 1 5.4128 -1.5262 7.8527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712981725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:57 Heat of formation + Delta-G solvation = 3.877166 kcal Electronic energy + Delta-G solvation = -18600.957980 eV Core-core repulsion = 15803.104619 eV Total energy + Delta-G solvation = -2797.853361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42601 -38.22962 -35.62255 -35.01154 -32.80193 -30.19542 -28.23582 -26.01663 -25.15573 -23.81467 -22.52878 -21.82237 -20.87587 -19.28304 -18.04478 -16.71430 -16.24389 -15.66651 -15.42195 -14.90616 -14.72935 -14.05004 -13.80468 -13.00851 -12.97587 -12.57155 -12.41428 -11.88143 -11.76603 -11.69778 -11.58143 -11.36212 -11.30696 -10.98933 -10.89619 -10.84148 -10.70744 -10.64604 -10.24916 -10.15736 -9.69709 -9.37621 -9.19645 -8.79904 -8.37606 -7.54125 -6.06520 -4.11178 3.27969 3.34510 3.36149 3.42387 3.52761 4.00171 4.19165 4.42094 4.42818 4.75783 4.85602 5.01471 5.14119 5.20393 5.24808 5.26379 5.46670 5.50051 5.62323 5.74220 5.76964 5.85811 5.91229 5.96762 5.98222 6.07194 6.10945 6.26059 6.37356 6.51197 6.70895 6.79187 7.02663 7.39790 7.59405 7.73666 7.96722 8.21044 8.59576 8.88798 9.14825 9.53895 11.00873 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035210 B = 0.004512 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.030797 B = 6204.662075 C = 6250.941759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.255 3.745 3 H 0.070 0.930 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.596 5.596 13 C 0.084 3.916 14 C 0.504 3.496 15 O -0.551 6.551 16 C -0.107 4.107 17 C -0.123 4.123 18 H 0.118 0.882 19 C -0.170 4.170 20 C -0.127 4.127 21 H 0.101 0.899 22 C -0.119 4.119 23 C -0.178 4.178 24 C -0.181 4.181 25 H 0.031 0.969 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -7.376 15.812 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.154 3.846 3 H 0.087 0.913 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.291 3.709 15 O -0.430 6.430 16 C -0.146 4.146 17 C -0.141 4.141 18 H 0.136 0.864 19 C -0.207 4.207 20 C -0.145 4.145 21 H 0.120 0.880 22 C -0.137 4.137 23 C -0.215 4.215 24 C -0.218 4.218 25 H 0.050 0.950 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.710 -6.627 15.539 17.296 hybrid contribution 0.130 -0.694 -0.938 1.174 sum 3.840 -7.321 14.601 16.779 Atomic orbital electron populations 1.22003 0.98702 0.98785 1.00339 1.18926 0.90341 0.95149 0.80140 0.91264 1.21278 1.36467 1.08542 0.90467 0.92277 1.24905 0.95171 0.94617 0.98935 1.69982 1.44437 1.13711 1.24028 0.86579 0.78655 0.80034 0.82548 1.20502 1.21202 1.19997 1.48212 1.49349 1.11494 1.23658 1.21586 0.98714 0.83537 1.02199 1.20366 0.79016 0.87194 0.84309 1.90629 1.58307 1.17354 1.76755 1.21218 1.00072 0.98303 0.95055 1.22144 0.95151 1.00734 0.96066 0.86383 1.23069 0.93081 1.03038 1.01513 1.21853 1.05144 0.95419 0.92074 0.88044 1.21723 1.03940 0.96195 0.91860 1.22935 0.92663 1.03222 1.02684 1.22930 0.97049 1.01571 1.00231 0.95009 0.96584 0.90660 0.92699 0.93999 0.90263 0.92875 0.89225 0.89614 0.88892 0.88843 0.87693 0.88815 0.88852 0.89002 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.12 37.16 0.34 -2.99 16 2 C 0.25 6.60 2.50 -69.08 -0.17 6.43 16 3 H 0.07 2.11 6.84 -51.93 -0.36 1.75 16 4 C -0.53 -14.45 8.01 -34.44 -0.28 -14.72 16 5 H 0.06 1.58 7.16 -52.49 -0.38 1.20 16 6 C 0.07 1.85 5.17 -17.82 -0.09 1.75 16 7 N -0.88 -25.62 12.17 55.43 0.67 -24.94 16 8 Si 0.89 21.12 29.55 -169.99 -5.02 16.09 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.60 -12.85 2.75 -175.26 -0.48 -13.34 16 13 C 0.08 1.40 9.17 59.85 0.55 1.95 16 14 C 0.50 10.59 7.67 -10.98 -0.08 10.50 16 15 O -0.55 -13.90 14.89 5.56 0.08 -13.82 16 16 C -0.11 -1.60 3.33 -27.88 -0.09 -1.70 16 17 C -0.12 -1.76 5.41 -90.62 -0.49 -2.25 16 18 H 0.12 1.95 7.30 -51.93 -0.38 1.57 16 19 C -0.17 -2.12 9.90 -26.73 -0.26 -2.38 16 20 C -0.13 -1.44 5.85 -90.62 -0.53 -1.97 16 21 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 22 C -0.12 -1.19 5.10 -90.63 -0.46 -1.66 16 23 C -0.18 -1.59 10.25 -26.71 -0.27 -1.87 16 24 C -0.18 -1.55 10.25 -26.71 -0.27 -1.83 16 25 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 1.95 6.84 -51.93 -0.36 1.60 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.40 6.92 -51.93 -0.36 1.04 16 31 H 0.05 0.72 6.43 -51.93 -0.33 0.38 16 32 H 0.09 1.19 7.99 -51.93 -0.42 0.77 16 33 H 0.09 1.16 6.88 -51.93 -0.36 0.81 16 34 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.11 1.05 7.35 -51.93 -0.38 0.67 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -31.16 325.16 -8.61 -39.77 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.64 Total: 2.07 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.13 Total: -10.73 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.19 Total: -38.28 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.16 -8.61 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712981725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.646 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds