Wall clock time and date at job start Mon Mar 30 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47444 * 2 1 4 4 C 1.50700 * 109.47480 * 239.99975 * 2 1 3 5 5 H 1.08001 * 120.00172 * 245.46274 * 4 2 1 6 6 C 1.37875 * 120.00095 * 65.45040 * 4 2 1 7 7 N 1.31517 * 119.99699 * 9.62884 * 6 4 2 8 8 Si 1.86806 * 120.00225 * 189.62020 * 6 4 2 9 9 H 1.48495 * 109.47050 * 84.99968 * 8 6 4 10 10 H 1.48500 * 109.47219 * 205.00004 * 8 6 4 11 11 H 1.48501 * 109.46920 * 324.99823 * 8 6 4 12 12 N 1.46500 * 109.46946 * 119.99910 * 2 1 3 13 13 C 1.46500 * 120.00361 * 60.00342 * 12 2 1 14 14 C 1.34777 * 119.99752 * 240.00079 * 12 2 1 15 15 O 1.21279 * 120.00216 * 359.97438 * 14 12 2 16 16 C 1.50702 * 119.99983 * 180.27623 * 14 12 2 17 17 C 1.53001 * 109.47294 * 179.72237 * 16 14 12 18 18 H 1.08996 * 115.54991 * 29.28104 * 17 16 14 19 19 C 1.52995 * 117.50115 * 243.60721 * 17 16 14 20 20 C 1.52999 * 117.49652 * 174.98120 * 17 16 14 21 21 H 1.09002 * 117.49850 * 214.97771 * 20 17 16 22 22 C 1.52997 * 117.50365 * 0.02562 * 20 17 16 23 23 C 1.52996 * 117.50198 * 248.61984 * 22 20 17 24 24 C 1.52995 * 117.50054 * 179.97438 * 22 20 17 25 25 H 1.08993 * 109.47142 * 183.28360 * 1 2 3 26 26 H 1.08996 * 109.47277 * 303.28848 * 1 2 3 27 27 H 1.09000 * 109.46889 * 63.29094 * 1 2 3 28 28 H 0.97007 * 119.99210 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46662 * 270.00367 * 13 12 2 30 30 H 1.09000 * 109.46810 * 29.99177 * 13 12 2 31 31 H 1.08998 * 109.47153 * 149.99880 * 13 12 2 32 32 H 1.08998 * 109.46853 * 299.72375 * 16 14 12 33 33 H 1.09000 * 109.47240 * 59.72247 * 16 14 12 34 34 H 1.09005 * 117.49696 * 0.02562 * 19 17 16 35 35 H 1.09002 * 117.49769 * 144.99785 * 19 17 16 36 36 H 1.09006 * 115.54744 * 34.32782 * 22 20 17 37 37 H 1.09005 * 117.49464 * 359.97438 * 23 22 20 38 38 H 1.08997 * 117.50375 * 145.01543 * 23 22 20 39 39 H 1.09005 * 117.49987 * 214.98100 * 24 22 20 40 40 H 1.08996 * 117.50478 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6371 -1.1338 6 6 1.7945 -0.1775 -2.4796 7 7 1.3003 1.0359 -2.5935 8 14 2.1745 -1.1789 -4.0101 9 1 1.0216 -2.0608 -4.3234 10 1 2.4215 -0.2627 -5.1524 11 1 3.3823 -2.0091 -3.7712 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.3006 -0.7477 3.3107 17 6 4.1551 0.2124 4.1407 18 1 3.8893 1.2665 4.0617 19 6 5.6355 -0.1315 4.3166 20 6 4.6689 -0.2877 5.4923 21 1 4.7411 0.4375 6.3029 22 6 4.2894 -1.7097 5.9103 23 6 3.3227 -1.8663 7.0858 24 6 4.8037 -2.2099 7.2616 25 1 -0.3633 -1.0259 0.0589 26 1 -0.3633 0.5640 0.8590 27 1 -0.3633 0.4619 -0.9180 28 1 1.1333 1.4109 -3.4725 29 1 0.7375 -2.1443 1.9993 30 1 1.5295 -2.5968 0.4709 31 1 2.4629 -2.5818 1.9864 32 1 2.4553 -1.0903 3.9075 33 1 3.9041 -1.6042 3.0103 34 1 6.0008 -1.0416 3.8406 35 1 6.3436 0.6964 4.3533 36 1 4.2179 -2.4347 5.0994 37 1 2.9575 -0.9562 7.5617 38 1 2.6149 -2.6943 7.0486 39 1 5.0699 -3.2640 7.3399 40 1 5.4128 -1.5262 7.8527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712981725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:56 Heat of formation + Delta-G solvation = -13.439517 kcal Electronic energy + Delta-G solvation = -18601.708888 eV Core-core repulsion = 15803.104619 eV Total energy + Delta-G solvation = -2798.604269 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88411 -39.34333 -37.13736 -36.19110 -34.76596 -31.98009 -29.68764 -27.50360 -27.26015 -24.64222 -23.57218 -23.05154 -22.04869 -20.53984 -19.46586 -18.53651 -17.88932 -17.22258 -16.55075 -16.31503 -16.19990 -15.63278 -14.76178 -14.69153 -14.18761 -14.00097 -13.90516 -13.62876 -13.30036 -13.06555 -12.84413 -12.77376 -12.63024 -12.37246 -12.32144 -12.24737 -12.14401 -12.08299 -11.85173 -11.41412 -11.22910 -10.64559 -10.59392 -10.45762 -10.20384 -9.29702 -8.16512 -6.30073 1.41624 1.42731 1.52336 1.87524 2.33683 2.49181 2.67075 3.12397 3.33503 3.58061 3.74723 3.93434 4.02975 4.17176 4.36025 4.40580 4.43181 4.49866 4.65863 4.69245 4.75283 4.76632 4.85334 4.87473 4.89471 4.97002 5.01913 5.07086 5.12113 5.27334 5.36393 5.36558 5.44293 5.47809 5.55733 5.68292 6.02472 6.14291 6.79003 6.89004 7.34384 7.54037 8.90475 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035210 B = 0.004512 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.030797 B = 6204.662075 C = 6250.941759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.256 3.744 3 H 0.010 0.990 4 C -0.540 4.540 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.604 5.604 13 C 0.078 3.922 14 C 0.491 3.509 15 O -0.608 6.608 16 C -0.086 4.086 17 C -0.152 4.152 18 H 0.085 0.915 19 C -0.172 4.172 20 C -0.097 4.097 21 H 0.108 0.892 22 C -0.135 4.135 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -10.465 17.175 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.154 3.846 3 H 0.028 0.972 4 C -0.578 4.578 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.214 1.214 11 H -0.193 1.193 12 N -0.334 5.334 13 C -0.064 4.064 14 C 0.281 3.719 15 O -0.490 6.490 16 C -0.125 4.125 17 C -0.170 4.170 18 H 0.104 0.896 19 C -0.209 4.209 20 C -0.115 4.115 21 H 0.126 0.874 22 C -0.153 4.153 23 C -0.214 4.214 24 C -0.208 4.208 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.054 -9.765 16.932 19.962 hybrid contribution 0.039 0.319 -1.303 1.342 sum 4.093 -9.447 15.629 18.715 Atomic orbital electron populations 1.21789 0.97307 0.99996 0.99256 1.18532 0.91380 0.92618 0.82059 0.97233 1.21575 1.36428 1.08597 0.91247 0.91816 1.25798 0.95025 0.95489 1.02267 1.70135 1.45669 1.15431 1.24712 0.85479 0.78965 0.78431 0.78208 1.19019 1.21407 1.19277 1.48260 1.49312 1.13444 1.22411 1.21871 1.01377 0.80501 1.02628 1.21490 0.78033 0.86835 0.85574 1.90601 1.60139 1.20097 1.78189 1.21148 1.01095 0.98100 0.92144 1.22006 0.96729 0.99170 0.99140 0.89645 1.23166 0.92052 1.03378 1.02303 1.21869 1.02392 0.96488 0.90798 0.87425 1.21743 1.05629 0.95140 0.92785 1.23018 0.93145 1.03611 1.01594 1.23008 0.96834 1.02358 0.98621 0.92623 0.95886 0.93293 0.92726 0.91498 0.91319 0.89102 0.86702 0.87295 0.87991 0.88842 0.87191 0.88960 0.87754 0.87742 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 9.12 71.98 0.66 -5.38 16 2 C 0.26 13.68 2.50 44.25 0.11 13.79 16 3 H 0.01 0.63 6.84 -2.39 -0.02 0.61 16 4 C -0.54 -29.82 8.01 25.60 0.20 -29.61 16 5 H 0.06 3.38 7.16 -2.91 -0.02 3.35 16 6 C 0.01 0.77 5.17 84.65 0.44 1.21 16 7 N -0.92 -55.06 12.17 21.45 0.26 -54.79 16 8 Si 0.96 43.39 29.55 68.60 2.03 45.42 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 12 N -0.60 -25.90 2.75 -826.80 -2.28 -28.17 16 13 C 0.08 2.40 9.17 127.77 1.17 3.57 16 14 C 0.49 20.83 7.67 87.66 0.67 21.50 16 15 O -0.61 -32.35 14.89 -3.03 -0.05 -32.40 16 16 C -0.09 -2.42 3.33 29.85 0.10 -2.32 16 17 C -0.15 -4.29 5.41 -10.80 -0.06 -4.35 16 18 H 0.09 2.98 7.30 -2.39 -0.02 2.97 16 19 C -0.17 -4.06 9.90 30.59 0.30 -3.76 16 20 C -0.10 -2.02 5.85 -10.79 -0.06 -2.08 16 21 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 22 C -0.13 -2.25 5.10 -10.80 -0.06 -2.31 16 23 C -0.18 -2.56 10.25 30.61 0.31 -2.25 16 24 C -0.17 -2.34 10.25 30.61 0.31 -2.02 16 25 H 0.05 2.36 7.56 -2.39 -0.02 2.35 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 2.60 6.84 -2.39 -0.02 2.59 16 28 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.27 6.92 -2.39 -0.02 2.25 16 31 H 0.09 2.08 6.43 -2.39 -0.02 2.07 16 32 H 0.11 2.67 7.99 -2.39 -0.02 2.65 16 33 H 0.11 2.59 6.88 -2.39 -0.02 2.57 16 34 H 0.10 2.21 8.03 -2.38 -0.02 2.19 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.11 1.75 7.35 -2.38 -0.02 1.74 16 37 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -71.40 325.16 5.08 -66.32 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.00 Total: 17.64 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.11 Total: -14.02 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.01 Total: -82.97 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.05 Total: -32.40 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -71.40 5.08 -66.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712981725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.885 kcal (2) G-P(sol) polarization free energy of solvation -71.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds