Wall clock time and date at job start Mon Mar 30 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47042 * 119.99758 * 2 1 3 5 5 H 1.07994 * 119.99827 * 120.00528 * 4 2 1 6 6 C 1.37879 * 119.99918 * 299.99651 * 4 2 1 7 7 N 1.31516 * 120.00200 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46818 * 90.00492 * 8 6 4 10 10 H 1.48497 * 109.47015 * 210.00580 * 8 6 4 11 11 H 1.48496 * 109.47191 * 330.00482 * 8 6 4 12 12 N 1.46496 * 109.47071 * 239.99745 * 2 1 3 13 13 C 1.46496 * 120.00365 * 299.99975 * 12 2 1 14 14 C 1.34783 * 119.99946 * 120.00121 * 12 2 1 15 15 O 1.21278 * 120.00013 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99922 * 179.97438 * 14 12 2 17 17 H 1.08997 * 115.55883 * 46.34881 * 16 14 12 18 18 C 1.53005 * 117.49578 * 192.03547 * 16 14 12 19 19 C 1.52993 * 117.49607 * 260.65867 * 16 14 12 20 20 H 1.08998 * 117.51747 * 145.03521 * 19 16 14 21 21 C 1.53000 * 117.50064 * 359.97438 * 19 16 14 22 22 H 1.08997 * 115.55419 * 12.64664 * 21 19 16 23 23 C 1.53009 * 117.49709 * 158.34975 * 21 19 16 24 24 C 1.53001 * 117.49963 * 226.97111 * 21 19 16 25 25 H 1.09007 * 117.49586 * 145.02323 * 24 21 19 26 26 C 1.53001 * 117.49896 * 0.02562 * 24 21 19 27 27 H 1.08997 * 109.47220 * 60.00466 * 1 2 3 28 28 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47595 * 300.00258 * 1 2 3 30 30 H 0.96992 * 120.00145 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.47192 * 270.00115 * 13 12 2 32 32 H 1.09003 * 109.47072 * 29.99939 * 13 12 2 33 33 H 1.08996 * 109.47267 * 150.00497 * 13 12 2 34 34 H 1.09003 * 117.49794 * 0.02562 * 18 16 14 35 35 H 1.08997 * 117.51476 * 214.96755 * 18 16 14 36 36 H 1.08996 * 117.50013 * 0.02562 * 23 21 19 37 37 H 1.08995 * 117.49680 * 214.98072 * 23 21 19 38 38 H 1.09000 * 109.46674 * 60.09264 * 26 24 21 39 39 H 1.09002 * 109.46574 * 180.08470 * 26 24 21 40 40 H 1.08987 * 109.47348 * 300.08571 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4124 10 1 1.3430 -0.9490 5.1120 11 1 2.4858 -2.5660 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0858 1.1256 -1.8917 16 6 3.2960 -0.7463 -3.3135 17 1 2.5521 -1.3286 -3.8572 18 6 4.3883 -0.0548 -4.1319 19 6 4.7288 -1.2819 -3.2838 20 1 4.9281 -2.2164 -3.8081 21 6 5.5417 -1.0545 -2.0077 22 1 4.9723 -0.7188 -1.1410 23 6 6.7336 -1.9801 -1.7550 24 6 6.9685 -0.5246 -2.1640 25 1 7.3378 0.1596 -1.3999 26 6 7.4730 -0.2620 -3.5844 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7082 1.1611 3.4843 31 1 2.4158 -2.7377 -0.9716 32 1 0.6904 -2.3002 -0.9846 33 1 1.6239 -2.2853 -2.5001 34 1 4.7434 0.9139 -3.7803 35 1 4.3634 -0.1822 -5.2141 36 1 6.9388 -2.7507 -2.4981 37 1 6.9483 -2.2535 -0.7220 38 1 6.8366 0.4816 -4.0642 39 1 8.4973 0.1084 -3.5434 40 1 7.4444 -1.1887 -4.1572 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717223445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:03 Heat of formation + Delta-G solvation = 8.822162 kcal Electronic energy + Delta-G solvation = -19262.218165 eV Core-core repulsion = 16464.579236 eV Total energy + Delta-G solvation = -2797.638930 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74884 -37.86372 -35.50004 -34.69952 -32.74014 -29.43295 -28.51716 -26.06406 -25.21572 -24.24718 -23.31192 -21.25809 -20.50962 -19.29468 -17.68007 -16.63093 -16.17513 -15.92689 -15.28638 -14.58605 -14.36528 -13.90159 -13.53758 -13.09243 -12.81029 -12.55204 -12.39094 -12.15210 -11.88896 -11.53573 -11.38479 -11.34375 -11.07661 -10.99863 -10.82383 -10.72704 -10.55870 -10.38558 -10.21555 -10.12995 -9.58268 -9.27076 -9.13970 -8.84919 -8.40084 -7.51620 -6.05083 -4.12767 3.23934 3.27725 3.34293 3.36429 3.83532 3.92682 4.30664 4.41407 4.65861 4.93335 5.01805 5.16818 5.19289 5.26150 5.40982 5.46141 5.46733 5.64890 5.84970 5.87209 5.91607 5.93374 5.94592 6.12354 6.14284 6.20811 6.37963 6.38752 6.42950 6.56779 6.79344 6.86038 7.09342 7.49605 7.56414 7.74984 8.04926 8.23108 8.60203 8.87200 9.14649 9.53964 11.00237 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.006915 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.690550 B = 4048.254463 C = 4733.716039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.090 3.910 14 C 0.534 3.466 15 O -0.552 6.552 16 C -0.181 4.181 17 H 0.118 0.882 18 C -0.146 4.146 19 C -0.093 4.093 20 H 0.107 0.893 21 C -0.120 4.120 22 H 0.113 0.887 23 C -0.174 4.174 24 C -0.150 4.150 25 H 0.101 0.899 26 C -0.118 4.118 27 H 0.011 0.989 28 H 0.030 0.970 29 H 0.093 0.907 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 -6.551 -11.646 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.054 4.054 14 C 0.321 3.679 15 O -0.431 6.431 16 C -0.202 4.202 17 H 0.136 0.864 18 C -0.183 4.183 19 C -0.112 4.112 20 H 0.125 0.875 21 C -0.138 4.138 22 H 0.131 0.869 23 C -0.211 4.211 24 C -0.168 4.168 25 H 0.119 0.881 26 C -0.175 4.175 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.993 -5.827 -11.365 14.561 hybrid contribution 0.118 -0.690 0.986 1.209 sum 7.111 -6.517 -10.379 14.169 Atomic orbital electron populations 1.22094 0.98330 0.99324 1.00809 1.18927 0.90817 0.94491 0.80055 0.91988 1.21318 1.31642 1.12880 0.90267 0.92310 1.24894 0.94996 0.95002 0.98925 1.69879 1.36415 1.22707 1.23684 0.86518 0.78640 0.79900 0.82477 1.20662 1.21126 1.19927 1.48147 1.48903 1.11586 1.23350 1.21515 1.01266 0.83282 0.99291 1.19375 0.78796 0.86434 0.83298 1.90635 1.58604 1.17098 1.76801 1.22420 0.93054 1.05120 0.99653 0.86401 1.22986 1.00595 0.97821 0.96924 1.21652 0.94081 0.98005 0.97434 0.87505 1.21868 0.89704 1.04065 0.98175 0.86918 1.23094 1.02951 0.92942 1.02100 1.22318 0.98949 0.96807 0.98708 0.88099 1.21330 1.00264 1.01605 0.94274 0.97016 0.95119 0.88829 0.92731 0.93370 0.91163 0.93010 0.87496 0.88606 0.89051 0.88976 0.91768 0.92834 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.25 16 2 C 0.26 6.68 2.64 -69.09 -0.18 6.50 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.52 -14.26 8.37 -34.44 -0.29 -14.54 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.59 -12.82 2.75 -175.27 -0.48 -13.30 16 13 C 0.09 1.57 9.51 59.84 0.57 2.14 16 14 C 0.53 11.31 5.78 -10.98 -0.06 11.24 16 15 O -0.55 -13.92 15.66 5.56 0.09 -13.84 16 16 C -0.18 -2.83 4.99 -91.77 -0.46 -3.29 16 17 H 0.12 1.55 6.96 -51.93 -0.36 1.19 16 18 C -0.15 -2.00 8.20 -26.73 -0.22 -2.22 16 19 C -0.09 -1.27 5.15 -90.62 -0.47 -1.74 16 20 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 21 C -0.12 -1.87 5.50 -90.61 -0.50 -2.37 16 22 H 0.11 2.25 6.92 -51.93 -0.36 1.89 16 23 C -0.17 -2.25 9.90 -26.72 -0.26 -2.52 16 24 C -0.15 -2.02 6.40 -90.62 -0.58 -2.60 16 25 H 0.10 1.42 8.14 -51.92 -0.42 0.99 16 26 C -0.12 -1.31 9.05 37.16 0.34 -0.97 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 29 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 33 H 0.05 0.72 6.22 -51.93 -0.32 0.40 16 34 H 0.11 1.69 7.27 -51.93 -0.38 1.32 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.73 6.40 -51.93 -0.33 0.40 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.54 7.90 -51.94 -0.41 0.13 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -30.75 319.04 -8.29 -39.04 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.43 Total: 3.78 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.88 Total: -11.95 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.14 Total: -38.08 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.75 -8.29 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717223445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.859 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds