Wall clock time and date at job start Mon Mar 30 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47042 * 119.99758 * 2 1 3 5 5 H 1.07994 * 119.99827 * 120.00528 * 4 2 1 6 6 C 1.37879 * 119.99918 * 299.99651 * 4 2 1 7 7 N 1.31516 * 120.00200 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46818 * 90.00492 * 8 6 4 10 10 H 1.48497 * 109.47015 * 210.00580 * 8 6 4 11 11 H 1.48496 * 109.47191 * 330.00482 * 8 6 4 12 12 N 1.46496 * 109.47071 * 239.99745 * 2 1 3 13 13 C 1.46496 * 120.00365 * 299.99975 * 12 2 1 14 14 C 1.34783 * 119.99946 * 120.00121 * 12 2 1 15 15 O 1.21278 * 120.00013 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99922 * 179.97438 * 14 12 2 17 17 H 1.08997 * 115.55883 * 46.34881 * 16 14 12 18 18 C 1.53005 * 117.49578 * 192.03547 * 16 14 12 19 19 C 1.52993 * 117.49607 * 260.65867 * 16 14 12 20 20 H 1.08998 * 117.51747 * 145.03521 * 19 16 14 21 21 C 1.53000 * 117.50064 * 359.97438 * 19 16 14 22 22 H 1.08997 * 115.55419 * 12.64664 * 21 19 16 23 23 C 1.53009 * 117.49709 * 158.34975 * 21 19 16 24 24 C 1.53001 * 117.49963 * 226.97111 * 21 19 16 25 25 H 1.09007 * 117.49586 * 145.02323 * 24 21 19 26 26 C 1.53001 * 117.49896 * 0.02562 * 24 21 19 27 27 H 1.08997 * 109.47220 * 60.00466 * 1 2 3 28 28 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47595 * 300.00258 * 1 2 3 30 30 H 0.96992 * 120.00145 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.47192 * 270.00115 * 13 12 2 32 32 H 1.09003 * 109.47072 * 29.99939 * 13 12 2 33 33 H 1.08996 * 109.47267 * 150.00497 * 13 12 2 34 34 H 1.09003 * 117.49794 * 0.02562 * 18 16 14 35 35 H 1.08997 * 117.51476 * 214.96755 * 18 16 14 36 36 H 1.08996 * 117.50013 * 0.02562 * 23 21 19 37 37 H 1.08995 * 117.49680 * 214.98072 * 23 21 19 38 38 H 1.09000 * 109.46674 * 60.09264 * 26 24 21 39 39 H 1.09002 * 109.46574 * 180.08470 * 26 24 21 40 40 H 1.08987 * 109.47348 * 300.08571 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4124 10 1 1.3430 -0.9490 5.1120 11 1 2.4858 -2.5660 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0858 1.1256 -1.8917 16 6 3.2960 -0.7463 -3.3135 17 1 2.5521 -1.3286 -3.8572 18 6 4.3883 -0.0548 -4.1319 19 6 4.7288 -1.2819 -3.2838 20 1 4.9281 -2.2164 -3.8081 21 6 5.5417 -1.0545 -2.0077 22 1 4.9723 -0.7188 -1.1410 23 6 6.7336 -1.9801 -1.7550 24 6 6.9685 -0.5246 -2.1640 25 1 7.3378 0.1596 -1.3999 26 6 7.4730 -0.2620 -3.5844 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7082 1.1611 3.4843 31 1 2.4158 -2.7377 -0.9716 32 1 0.6904 -2.3002 -0.9846 33 1 1.6239 -2.2853 -2.5001 34 1 4.7434 0.9139 -3.7803 35 1 4.3634 -0.1822 -5.2141 36 1 6.9388 -2.7507 -2.4981 37 1 6.9483 -2.2535 -0.7220 38 1 6.8366 0.4816 -4.0642 39 1 8.4973 0.1084 -3.5434 40 1 7.4444 -1.1887 -4.1572 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717223445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:03 Heat of formation + Delta-G solvation = -8.916872 kcal Electronic energy + Delta-G solvation = -19262.987388 eV Core-core repulsion = 16464.579236 eV Total energy + Delta-G solvation = -2798.408152 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19914 -39.20879 -37.19829 -36.05135 -34.73756 -31.40286 -29.44555 -27.60567 -27.32102 -25.70801 -24.47537 -22.36004 -22.18355 -20.58935 -19.22336 -18.49564 -17.85864 -17.20471 -17.07409 -16.22216 -15.80365 -15.41291 -14.88849 -14.53288 -14.20484 -14.03171 -13.89375 -13.49654 -13.21082 -13.12988 -12.99964 -12.86424 -12.74195 -12.58137 -12.34786 -12.20550 -12.16355 -12.09564 -11.64095 -11.55330 -11.20776 -10.67861 -10.65534 -10.47548 -10.32926 -9.30527 -8.17057 -6.33676 1.37284 1.38478 1.48768 1.73796 2.29151 2.48095 2.70239 3.09348 3.11437 3.54435 3.75890 3.91491 3.95359 4.11922 4.27158 4.33211 4.45323 4.54765 4.56769 4.67142 4.80387 4.85665 4.90303 4.91968 4.97021 5.01892 5.04245 5.05889 5.10964 5.23602 5.27415 5.37735 5.44098 5.48890 5.62310 5.67298 6.02978 6.14627 6.74451 6.87667 7.31581 7.52409 8.87353 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.006915 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.690550 B = 4048.254463 C = 4733.716039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.003 0.997 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.283 1.283 10 H -0.277 1.277 11 H -0.261 1.261 12 N -0.598 5.598 13 C 0.088 3.912 14 C 0.524 3.476 15 O -0.610 6.610 16 C -0.194 4.194 17 H 0.155 0.845 18 C -0.136 4.136 19 C -0.072 4.072 20 H 0.150 0.850 21 C -0.150 4.150 22 H 0.055 0.945 23 C -0.152 4.152 24 C -0.153 4.153 25 H 0.081 0.919 26 C -0.112 4.112 27 H 0.019 0.981 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.945 -9.593 -13.732 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.021 0.979 4 C -0.573 4.573 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.185 1.185 12 N -0.327 5.327 13 C -0.054 4.054 14 C 0.314 3.686 15 O -0.493 6.493 16 C -0.214 4.214 17 H 0.172 0.828 18 C -0.173 4.173 19 C -0.090 4.090 20 H 0.167 0.833 21 C -0.168 4.168 22 H 0.073 0.927 23 C -0.189 4.189 24 C -0.172 4.172 25 H 0.099 0.901 26 C -0.169 4.169 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.142 0.858 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.972 -8.909 -13.471 18.011 hybrid contribution -0.155 0.337 1.671 1.711 sum 7.817 -8.573 -11.800 16.548 Atomic orbital electron populations 1.21872 0.97124 1.00161 0.99900 1.18506 0.91661 0.91993 0.81982 0.97864 1.21535 1.31710 1.12873 0.91173 0.92458 1.25748 0.95109 0.95685 1.02023 1.70023 1.37332 1.23968 1.24411 0.85483 0.77800 0.79260 0.78666 1.20963 1.20261 1.18510 1.48154 1.49074 1.13300 1.22185 1.21748 1.01000 0.80392 1.02261 1.20418 0.77617 0.86021 0.84582 1.90595 1.60378 1.19916 1.78379 1.22414 0.94914 1.06530 0.97585 0.82753 1.23078 0.98707 0.96539 0.98973 1.21804 0.91401 0.99535 0.96277 0.83257 1.21735 0.90602 1.06848 0.97636 0.92703 1.23182 0.99910 0.93057 1.02709 1.22430 0.97336 0.97273 1.00122 0.90114 1.21326 1.00630 1.02613 0.92306 0.96185 0.93209 0.91413 0.92627 0.93189 0.91368 0.88590 0.90649 0.84352 0.85773 0.89720 0.92294 0.91649 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.95 71.98 0.64 -5.97 16 2 C 0.26 14.21 2.64 44.25 0.12 14.32 16 3 H 0.00 0.22 6.90 -2.39 -0.02 0.21 16 4 C -0.53 -30.14 8.37 25.60 0.21 -29.93 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.14 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -54.47 11.32 21.45 0.24 -54.22 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 12 N -0.60 -26.51 2.75 -826.80 -2.28 -28.79 16 13 C 0.09 2.92 9.51 127.77 1.21 4.13 16 14 C 0.52 22.76 5.78 87.66 0.51 23.27 16 15 O -0.61 -32.91 15.66 -3.02 -0.05 -32.95 16 16 C -0.19 -5.62 4.99 -11.54 -0.06 -5.68 16 17 H 0.16 3.33 6.96 -2.39 -0.02 3.31 16 18 C -0.14 -3.37 8.20 30.60 0.25 -3.12 16 19 C -0.07 -1.74 5.15 -10.79 -0.06 -1.80 16 20 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 21 C -0.15 -4.61 5.50 -10.79 -0.06 -4.67 16 22 H 0.05 2.34 6.92 -2.39 -0.02 2.32 16 23 C -0.15 -3.62 9.90 30.60 0.30 -3.31 16 24 C -0.15 -4.05 6.40 -10.79 -0.07 -4.12 16 25 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 26 C -0.11 -2.19 9.05 71.98 0.65 -1.53 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 2.24 6.66 -2.39 -0.02 2.23 16 29 H 0.07 3.75 6.07 -2.38 -0.01 3.73 16 30 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 2.26 6.43 -2.39 -0.02 2.25 16 33 H 0.10 2.30 6.22 -2.39 -0.01 2.29 16 34 H 0.07 2.39 7.27 -2.39 -0.02 2.37 16 35 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.12 2.16 8.05 -2.39 -0.02 2.14 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 1.22 6.40 -2.39 -0.02 1.21 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.16 7.90 -2.39 -0.02 1.14 16 Total: -1.00 -73.43 319.04 5.07 -68.36 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.01 Total: 18.51 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.11 Total: -17.18 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.03 Total: -83.01 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -73.43 5.07 -68.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717223445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.446 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds