Wall clock time and date at job start Mon Mar 30 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 N 1.46502 * 109.47199 * 120.00086 * 2 1 3 5 5 C 1.37101 * 119.99860 * 294.58817 * 4 2 1 6 6 H 1.08000 * 119.99818 * 320.02149 * 5 4 2 7 7 C 1.38950 * 119.99929 * 140.01747 * 5 4 2 8 8 N 1.31409 * 120.00133 * 339.91263 * 7 5 4 9 9 Si 1.86800 * 119.99835 * 159.90841 * 7 5 4 10 10 H 1.48503 * 109.47468 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47227 * 120.00148 * 9 7 5 12 12 H 1.48505 * 109.47244 * 240.00085 * 9 7 5 13 13 C 1.34780 * 120.00310 * 114.58681 * 4 2 1 14 14 O 1.21293 * 120.00267 * 179.72776 * 13 4 2 15 15 C 1.50699 * 119.99566 * 0.02562 * 13 4 2 16 16 H 1.08996 * 115.55103 * 27.49398 * 15 13 4 17 17 C 1.53002 * 117.49415 * 173.16126 * 15 13 4 18 18 C 1.52995 * 59.99869 * 107.49033 * 17 15 13 19 19 H 1.09001 * 117.49989 * 107.48947 * 18 17 15 20 20 C 1.53005 * 117.49969 * 252.50573 * 18 17 15 21 21 H 1.09001 * 115.54705 * 345.82106 * 20 18 17 22 22 C 1.53003 * 117.49707 * 131.48281 * 20 18 17 23 23 C 1.52995 * 117.49960 * 200.10490 * 20 18 17 24 24 H 1.09004 * 117.49574 * 145.02206 * 23 20 18 25 25 C 1.52996 * 117.50039 * 0.02562 * 23 20 18 26 26 H 1.08993 * 109.47500 * 303.36198 * 1 2 3 27 27 H 1.09001 * 109.46815 * 63.36256 * 1 2 3 28 28 H 1.09003 * 109.47337 * 183.36007 * 1 2 3 29 29 H 1.08999 * 109.47757 * 240.00130 * 2 1 3 30 30 H 1.09002 * 109.46982 * 175.18489 * 3 2 1 31 31 H 1.08996 * 109.47134 * 295.18602 * 3 2 1 32 32 H 1.09000 * 109.46768 * 55.18902 * 3 2 1 33 33 H 0.97001 * 119.99610 * 179.97438 * 8 7 5 34 34 H 1.09003 * 117.49829 * 214.97927 * 17 15 13 35 35 H 1.08997 * 117.50064 * 359.97327 * 17 15 13 36 36 H 1.08998 * 117.49604 * 214.98026 * 22 20 18 37 37 H 1.09005 * 117.50004 * 0.02562 * 22 20 18 38 38 H 1.09002 * 109.47374 * 59.99896 * 25 23 20 39 39 H 1.09005 * 109.47243 * 179.97438 * 25 23 20 40 40 H 1.09000 * 109.47408 * 299.99596 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7810 -0.1611 2.4383 6 1 1.8552 0.9050 2.5940 7 6 1.4449 -0.9961 3.4969 8 7 0.9718 -2.1990 3.2603 9 14 1.6657 -0.4087 5.2563 10 1 2.2114 0.9725 5.2523 11 1 0.3531 -0.4208 5.9507 12 1 2.6088 -1.3109 5.9648 13 6 2.7008 -1.8466 1.0756 14 8 3.1094 -2.4158 2.0656 15 6 2.9621 -2.4283 -0.2899 16 1 3.0100 -1.7079 -1.1064 17 6 3.8762 -3.6524 -0.3730 18 6 2.3703 -3.8056 -0.5960 19 1 2.0286 -3.9915 -1.6142 20 6 1.5584 -4.4869 0.5075 21 1 2.1408 -5.0234 1.2566 22 6 0.2772 -3.7922 0.9733 23 6 0.1936 -5.0638 0.1266 24 1 -0.1222 -5.9804 0.6250 25 6 -0.2548 -4.9159 -1.3287 26 1 -0.3634 0.5651 0.8582 27 1 -0.3633 0.4608 -0.9186 28 1 -0.3634 -1.0259 0.0602 29 1 1.8934 -0.5138 -0.8899 30 1 3.1265 1.4437 0.0863 31 1 1.7487 1.9308 -0.9299 32 1 1.6079 1.9806 0.8438 33 1 0.7375 -2.7820 3.9993 34 1 4.5252 -3.7376 -1.2446 35 1 4.2889 -4.0367 0.5597 36 1 0.0165 -3.8721 2.0286 37 1 0.0125 -2.8500 0.4932 38 1 0.4612 -5.4147 -1.9819 39 1 -1.2378 -5.3698 -1.4540 40 1 -0.3070 -3.8583 -1.5871 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717226859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:14 Heat of formation + Delta-G solvation = 26.292498 kcal Electronic energy + Delta-G solvation = -20230.969935 eV Core-core repulsion = 17434.088575 eV Total energy + Delta-G solvation = -2796.881359 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14390 -37.20544 -35.28091 -34.21790 -32.05237 -29.78395 -27.94280 -26.44718 -25.64838 -23.20780 -22.36778 -20.53985 -20.39500 -19.06409 -18.17297 -16.10822 -15.66913 -15.21251 -14.78224 -14.09134 -13.90024 -13.22674 -13.09095 -12.95009 -12.64981 -12.44569 -12.04830 -11.87401 -11.61564 -11.48004 -11.25250 -10.95146 -10.82710 -10.73553 -10.55899 -10.42276 -10.24375 -10.11754 -9.97858 -9.78872 -9.57912 -8.91664 -8.67019 -8.64453 -7.83044 -6.91807 -5.93854 -3.66205 3.36894 3.47183 3.48181 3.96492 4.38948 4.64293 4.85978 5.00560 5.33654 5.43386 5.46548 5.61227 5.67326 5.72361 5.77868 5.86532 5.96434 6.00120 6.09123 6.13460 6.17067 6.27361 6.30454 6.31939 6.40663 6.46596 6.57957 6.59559 6.66379 6.78767 6.85360 6.93439 7.00292 7.09274 7.35708 7.37710 7.78171 8.41421 9.23640 9.37611 9.86180 10.53462 11.10335 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.010093 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.971473 B = 2773.517168 C = 3214.610235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 C -0.152 4.152 4 N -0.447 5.447 5 C -0.341 4.341 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.813 5.813 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.285 1.285 13 C 0.509 3.491 14 O -0.531 6.531 15 C -0.176 4.176 16 H 0.101 0.899 17 C -0.156 4.156 18 C -0.098 4.098 19 H 0.098 0.902 20 C -0.105 4.105 21 H 0.095 0.905 22 C -0.105 4.105 23 C -0.192 4.192 24 H 0.089 0.911 25 C -0.113 4.113 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.256 0.744 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -1.109 -9.209 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 C -0.210 4.210 4 N -0.169 5.169 5 C -0.468 4.468 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.447 5.447 9 Si 0.728 3.272 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.296 3.704 14 O -0.408 6.408 15 C -0.197 4.197 16 H 0.119 0.881 17 C -0.194 4.194 18 C -0.117 4.117 19 H 0.116 0.884 20 C -0.123 4.123 21 H 0.113 0.887 22 C -0.142 4.142 23 C -0.210 4.210 24 H 0.107 0.893 25 C -0.170 4.170 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.138 -1.555 -8.598 8.811 hybrid contribution 0.087 0.300 0.795 0.854 sum -1.051 -1.256 -7.802 7.972 Atomic orbital electron populations 1.22017 0.96288 1.01921 1.00154 1.21019 0.93935 0.92987 0.90153 1.22048 1.00895 0.97371 1.00688 1.43237 1.48017 1.21469 1.04168 1.18852 1.50260 0.92869 0.84833 0.90761 1.25050 0.94291 0.95557 0.98813 1.69915 1.35809 1.07777 1.31159 0.86354 0.77311 0.78633 0.84870 1.20021 1.21651 1.21079 1.18707 0.81127 0.83176 0.87405 1.90494 1.52098 1.59755 1.38473 1.22588 1.06302 0.91247 0.99592 0.88146 1.22903 0.92423 1.01299 1.02737 1.21646 0.94544 0.97410 0.98065 0.88397 1.21453 0.89014 1.03295 0.98572 0.88659 1.22972 0.98219 0.92850 1.00120 1.22520 1.02121 0.99661 0.96725 0.89298 1.21256 0.99736 1.01220 0.94821 0.91980 0.94340 0.92718 0.91663 0.93194 0.93654 0.92068 0.93358 0.89599 0.88061 0.87334 0.89527 0.93192 0.93222 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.19 37.15 0.34 -2.36 16 2 C 0.12 2.42 3.15 -67.93 -0.21 2.20 16 3 C -0.15 -2.64 8.93 37.16 0.33 -2.30 16 4 N -0.45 -10.74 2.47 -107.73 -0.27 -11.01 16 5 C -0.34 -9.05 8.20 -14.93 -0.12 -9.17 16 6 H 0.07 1.95 6.83 -52.49 -0.36 1.59 16 7 C 0.07 1.99 4.33 -17.47 -0.08 1.92 16 8 N -0.81 -22.32 8.72 55.50 0.48 -21.84 16 9 Si 0.90 21.83 29.60 -169.99 -5.03 16.80 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.51 12.55 5.12 -10.98 -0.06 12.49 16 14 O -0.53 -15.21 13.24 5.55 0.07 -15.14 16 15 C -0.18 -3.49 5.28 -91.77 -0.48 -3.98 16 16 H 0.10 1.78 6.21 -51.93 -0.32 1.46 16 17 C -0.16 -2.81 9.76 -26.73 -0.26 -3.07 16 18 C -0.10 -1.77 5.50 -90.62 -0.50 -2.27 16 19 H 0.10 1.55 6.67 -51.93 -0.35 1.20 16 20 C -0.11 -2.07 4.84 -90.62 -0.44 -2.51 16 21 H 0.10 2.08 8.14 -51.93 -0.42 1.65 16 22 C -0.10 -2.19 7.68 -26.73 -0.21 -2.39 16 23 C -0.19 -3.30 6.41 -90.62 -0.58 -3.88 16 24 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 25 C -0.11 -1.63 8.78 37.16 0.33 -1.30 16 26 H 0.06 1.24 7.88 -51.93 -0.41 0.83 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.09 6.30 -51.93 -0.33 0.76 16 29 H 0.07 1.17 5.27 -51.93 -0.27 0.90 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.12 7.12 -51.93 -0.37 0.75 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.10 2.04 7.68 -51.93 -0.40 1.64 16 36 H 0.11 2.55 6.66 -51.93 -0.35 2.20 16 37 H 0.09 1.93 6.21 -51.93 -0.32 1.60 16 38 H 0.05 0.66 7.71 -51.93 -0.40 0.25 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -29.45 310.25 -8.38 -37.83 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.38 Total: 5.31 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.94 Total: -16.63 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.22 Total: -32.84 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.07 Total: -15.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.45 -8.38 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717226859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.121 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds