Wall clock time and date at job start Mon Mar 30 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 N 1.46502 * 109.47199 * 120.00086 * 2 1 3 5 5 C 1.37101 * 119.99860 * 294.58817 * 4 2 1 6 6 H 1.08000 * 119.99818 * 320.02149 * 5 4 2 7 7 C 1.38950 * 119.99929 * 140.01747 * 5 4 2 8 8 N 1.31409 * 120.00133 * 339.91263 * 7 5 4 9 9 Si 1.86800 * 119.99835 * 159.90841 * 7 5 4 10 10 H 1.48503 * 109.47468 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47227 * 120.00148 * 9 7 5 12 12 H 1.48505 * 109.47244 * 240.00085 * 9 7 5 13 13 C 1.34780 * 120.00310 * 114.58681 * 4 2 1 14 14 O 1.21293 * 120.00267 * 179.72776 * 13 4 2 15 15 C 1.50699 * 119.99566 * 0.02562 * 13 4 2 16 16 H 1.08996 * 115.55103 * 27.49398 * 15 13 4 17 17 C 1.53002 * 117.49415 * 173.16126 * 15 13 4 18 18 C 1.52995 * 59.99869 * 107.49033 * 17 15 13 19 19 H 1.09001 * 117.49989 * 107.48947 * 18 17 15 20 20 C 1.53005 * 117.49969 * 252.50573 * 18 17 15 21 21 H 1.09001 * 115.54705 * 345.82106 * 20 18 17 22 22 C 1.53003 * 117.49707 * 131.48281 * 20 18 17 23 23 C 1.52995 * 117.49960 * 200.10490 * 20 18 17 24 24 H 1.09004 * 117.49574 * 145.02206 * 23 20 18 25 25 C 1.52996 * 117.50039 * 0.02562 * 23 20 18 26 26 H 1.08993 * 109.47500 * 303.36198 * 1 2 3 27 27 H 1.09001 * 109.46815 * 63.36256 * 1 2 3 28 28 H 1.09003 * 109.47337 * 183.36007 * 1 2 3 29 29 H 1.08999 * 109.47757 * 240.00130 * 2 1 3 30 30 H 1.09002 * 109.46982 * 175.18489 * 3 2 1 31 31 H 1.08996 * 109.47134 * 295.18602 * 3 2 1 32 32 H 1.09000 * 109.46768 * 55.18902 * 3 2 1 33 33 H 0.97001 * 119.99610 * 179.97438 * 8 7 5 34 34 H 1.09003 * 117.49829 * 214.97927 * 17 15 13 35 35 H 1.08997 * 117.50064 * 359.97327 * 17 15 13 36 36 H 1.08998 * 117.49604 * 214.98026 * 22 20 18 37 37 H 1.09005 * 117.50004 * 0.02562 * 22 20 18 38 38 H 1.09002 * 109.47374 * 59.99896 * 25 23 20 39 39 H 1.09005 * 109.47243 * 179.97438 * 25 23 20 40 40 H 1.09000 * 109.47408 * 299.99596 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7810 -0.1611 2.4383 6 1 1.8552 0.9050 2.5940 7 6 1.4449 -0.9961 3.4969 8 7 0.9718 -2.1990 3.2603 9 14 1.6657 -0.4087 5.2563 10 1 2.2114 0.9725 5.2523 11 1 0.3531 -0.4208 5.9507 12 1 2.6088 -1.3109 5.9648 13 6 2.7008 -1.8466 1.0756 14 8 3.1094 -2.4158 2.0656 15 6 2.9621 -2.4283 -0.2899 16 1 3.0100 -1.7079 -1.1064 17 6 3.8762 -3.6524 -0.3730 18 6 2.3703 -3.8056 -0.5960 19 1 2.0286 -3.9915 -1.6142 20 6 1.5584 -4.4869 0.5075 21 1 2.1408 -5.0234 1.2566 22 6 0.2772 -3.7922 0.9733 23 6 0.1936 -5.0638 0.1266 24 1 -0.1222 -5.9804 0.6250 25 6 -0.2548 -4.9159 -1.3287 26 1 -0.3634 0.5651 0.8582 27 1 -0.3633 0.4608 -0.9186 28 1 -0.3634 -1.0259 0.0602 29 1 1.8934 -0.5138 -0.8899 30 1 3.1265 1.4437 0.0863 31 1 1.7487 1.9308 -0.9299 32 1 1.6079 1.9806 0.8438 33 1 0.7375 -2.7820 3.9993 34 1 4.5252 -3.7376 -1.2446 35 1 4.2889 -4.0367 0.5597 36 1 0.0165 -3.8721 2.0286 37 1 0.0125 -2.8500 0.4932 38 1 0.4612 -5.4147 -1.9819 39 1 -1.2378 -5.3698 -1.4540 40 1 -0.3070 -3.8583 -1.5871 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717226859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:14 Heat of formation + Delta-G solvation = 10.766663 kcal Electronic energy + Delta-G solvation = -20231.643185 eV Core-core repulsion = 17434.088575 eV Total energy + Delta-G solvation = -2797.554610 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82244 -38.82912 -36.95592 -35.87567 -34.01687 -31.56852 -29.18735 -27.93755 -27.50298 -24.85208 -23.98842 -22.15897 -21.94753 -20.63652 -19.89063 -17.78139 -17.44403 -16.87310 -16.55775 -15.87764 -15.48463 -14.94783 -14.81012 -14.54064 -14.08212 -13.71947 -13.60589 -13.35474 -13.20322 -13.02128 -12.99897 -12.79267 -12.49882 -12.43404 -12.24435 -11.93014 -11.89325 -11.80945 -11.55784 -11.41907 -11.09474 -10.66254 -10.38678 -10.20275 -9.75203 -8.88267 -7.98162 -5.72677 1.37708 1.45404 1.50564 2.29957 2.44944 3.05646 3.20505 3.34409 3.46497 3.88084 4.04797 4.10080 4.20392 4.24113 4.37566 4.47269 4.51406 4.55490 4.61318 4.67695 4.69689 4.93835 4.94059 5.03698 5.07071 5.11163 5.13741 5.16565 5.26872 5.28966 5.40738 5.51429 5.53827 5.54216 5.60717 5.73753 5.77777 6.36500 7.23306 7.44818 7.93798 8.63328 9.02841 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.010093 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.971473 B = 2773.517168 C = 3214.610235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.116 3.884 3 C -0.144 4.144 4 N -0.457 5.457 5 C -0.351 4.351 6 H 0.071 0.929 7 C 0.028 3.972 8 N -0.825 5.825 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.303 1.303 13 C 0.498 3.502 14 O -0.586 6.586 15 C -0.190 4.190 16 H 0.131 0.869 17 C -0.146 4.146 18 C -0.084 4.084 19 H 0.136 0.864 20 C -0.117 4.117 21 H 0.061 0.939 22 C -0.122 4.122 23 C -0.156 4.156 24 H 0.096 0.904 25 C -0.110 4.110 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.246 0.754 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -0.910 -12.571 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 C -0.202 4.202 4 N -0.178 5.178 5 C -0.478 4.478 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.460 5.460 9 Si 0.775 3.225 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.231 1.231 13 C 0.287 3.713 14 O -0.467 6.467 15 C -0.211 4.211 16 H 0.149 0.851 17 C -0.183 4.183 18 C -0.102 4.102 19 H 0.154 0.846 20 C -0.136 4.136 21 H 0.079 0.921 22 C -0.159 4.159 23 C -0.175 4.175 24 H 0.114 0.886 25 C -0.167 4.167 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.415 -1.317 -11.984 12.139 hybrid contribution 0.178 0.251 1.851 1.876 sum -1.237 -1.067 -10.134 10.264 Atomic orbital electron populations 1.21915 0.95602 1.00673 1.01191 1.21329 0.94528 0.93991 0.88938 1.21977 1.00231 0.95923 1.02095 1.43468 1.47852 1.21674 1.04852 1.18976 1.49684 0.92726 0.86455 0.91082 1.25697 0.94773 0.96027 1.01545 1.70064 1.36690 1.08275 1.30930 0.85607 0.77001 0.78064 0.81784 1.19088 1.20765 1.23070 1.19515 0.80033 0.82872 0.88872 1.90458 1.54166 1.61233 1.40863 1.22514 1.08594 0.92567 0.97466 0.85143 1.22969 0.93015 0.99343 1.03007 1.21763 0.94335 0.95239 0.98866 0.84614 1.21407 0.89544 1.03683 0.98931 0.92072 1.22595 1.00386 0.94203 0.98702 1.22643 0.98967 0.97623 0.98231 0.88566 1.21291 1.01428 1.01720 0.92251 0.94309 0.90208 0.94677 0.89359 0.93861 0.89649 0.93754 0.94401 0.85215 0.91263 0.91076 0.90959 0.90895 0.91197 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.19 71.98 0.66 -4.17 16 2 C 0.12 4.30 3.15 44.99 0.14 4.45 16 3 C -0.14 -4.68 8.93 71.98 0.64 -4.04 16 4 N -0.46 -22.13 2.47 -613.13 -1.51 -23.64 16 5 C -0.35 -19.07 8.20 84.04 0.69 -18.38 16 6 H 0.07 3.82 6.83 -2.91 -0.02 3.80 16 7 C 0.03 1.55 4.33 84.93 0.37 1.92 16 8 N -0.83 -47.74 8.72 21.66 0.19 -47.55 16 9 Si 0.95 46.51 29.60 68.60 2.03 48.54 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 13 C 0.50 24.86 5.12 87.66 0.45 25.30 16 14 O -0.59 -35.01 13.24 -3.07 -0.04 -35.05 16 15 C -0.19 -7.20 5.28 -11.54 -0.06 -7.26 16 16 H 0.13 4.10 6.21 -2.39 -0.01 4.09 16 17 C -0.15 -4.95 9.76 30.59 0.30 -4.65 16 18 C -0.08 -2.82 5.50 -10.79 -0.06 -2.87 16 19 H 0.14 3.59 6.67 -2.39 -0.02 3.57 16 20 C -0.12 -4.63 4.84 -10.79 -0.05 -4.68 16 21 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 22 C -0.12 -5.21 7.68 30.60 0.23 -4.98 16 23 C -0.16 -5.15 6.41 -10.80 -0.07 -5.22 16 24 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 25 C -0.11 -2.71 8.78 71.98 0.63 -2.08 16 26 H 0.04 1.53 7.88 -2.39 -0.02 1.51 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.03 1.37 6.30 -2.39 -0.02 1.35 16 29 H 0.09 2.86 5.27 -2.39 -0.01 2.85 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.57 7.12 -2.39 -0.02 1.55 16 33 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.07 2.82 7.68 -2.39 -0.02 2.80 16 36 H 0.07 3.56 6.66 -2.39 -0.02 3.55 16 37 H 0.07 3.28 6.21 -2.38 -0.01 3.26 16 38 H 0.07 1.52 7.71 -2.39 -0.02 1.50 16 39 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.05 1.34 7.90 -2.39 -0.02 1.32 16 Total: -1.00 -68.59 310.25 5.55 -63.04 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 1.01 Total: 21.33 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 3.88 Total: -26.66 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.33 Total: -71.19 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.04 Total: -35.05 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -68.59 5.55 -63.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717226859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.802 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds