Wall clock time and date at job start Mon Mar 30 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47472 * 2 1 4 4 N 1.46500 * 109.47200 * 120.00210 * 2 1 3 5 5 C 1.37100 * 120.00587 * 118.86587 * 4 2 1 6 6 H 1.07993 * 120.00057 * 208.67221 * 5 4 2 7 7 C 1.38947 * 119.99537 * 28.67850 * 5 4 2 8 8 N 1.31412 * 120.00353 * 19.75326 * 7 5 4 9 9 Si 1.86798 * 119.99903 * 199.75525 * 7 5 4 10 10 H 1.48505 * 109.47041 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47305 * 209.99918 * 9 7 5 12 12 H 1.48505 * 109.47187 * 330.00272 * 9 7 5 13 13 C 1.34783 * 119.99721 * 298.86576 * 4 2 1 14 14 O 1.21294 * 119.99891 * 174.18710 * 13 4 2 15 15 C 1.50697 * 119.99768 * 354.18735 * 13 4 2 16 16 H 1.08996 * 115.55155 * 25.07297 * 15 13 4 17 17 C 1.53000 * 117.49945 * 239.39660 * 15 13 4 18 18 C 1.52993 * 60.00447 * 252.51486 * 17 15 13 19 19 H 1.09001 * 117.49905 * 252.51005 * 18 17 15 20 20 C 1.52995 * 117.50036 * 107.48627 * 18 17 15 21 21 H 1.09000 * 115.55237 * 332.19587 * 20 18 17 22 22 C 1.53011 * 117.49746 * 117.85887 * 20 18 17 23 23 C 1.53003 * 117.50088 * 186.48210 * 20 18 17 24 24 H 1.08997 * 117.49981 * 145.02457 * 23 20 18 25 25 C 1.53003 * 117.49648 * 0.02562 * 23 20 18 26 26 H 1.08998 * 109.47044 * 41.55658 * 1 2 3 27 27 H 1.09000 * 109.47175 * 281.55998 * 1 2 3 28 28 H 1.08997 * 109.47552 * 161.56075 * 1 2 3 29 29 H 1.09002 * 109.47051 * 239.99338 * 2 1 3 30 30 H 1.09003 * 109.47011 * 59.99747 * 3 2 1 31 31 H 1.09000 * 109.47372 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46745 * 300.00265 * 3 2 1 33 33 H 0.97004 * 120.00283 * 179.97438 * 8 7 5 34 34 H 1.09006 * 117.49853 * 0.02562 * 17 15 13 35 35 H 1.08997 * 117.50036 * 145.01752 * 17 15 13 36 36 H 1.08993 * 117.49853 * 214.98142 * 22 20 18 37 37 H 1.08997 * 117.49501 * 0.02562 * 22 20 18 38 38 H 1.08996 * 109.46888 * 64.68872 * 25 23 20 39 39 H 1.08998 * 109.46826 * 184.68314 * 25 23 20 40 40 H 1.08999 * 109.47222 * 304.68145 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.7872 -1.8188 1.0706 6 1 2.7697 -2.5730 1.8433 7 6 3.5892 -1.9915 -0.0509 8 7 3.9216 -0.9549 -0.7871 9 14 4.1948 -3.6973 -0.5122 10 1 3.2134 -4.3420 -1.4213 11 1 5.5073 -3.5879 -1.1981 12 1 4.3451 -4.5182 0.7162 13 6 1.7117 -0.2170 2.4202 14 8 2.0253 -0.8447 3.4095 15 6 0.9791 1.0926 2.5595 16 1 0.3705 1.3842 1.7036 17 6 1.6686 2.2073 3.3487 18 6 0.4697 1.4724 3.9514 19 1 -0.4744 2.0140 4.0114 20 6 0.7431 0.4936 5.0951 21 1 1.7318 0.0349 5.0950 22 6 0.1052 0.7971 6.4523 23 6 -0.4290 -0.3528 5.5959 24 1 -0.2114 -1.3688 5.9254 25 6 -1.7846 -0.1561 4.9143 26 1 -0.3633 0.7690 -0.6817 27 1 -0.3633 0.2059 1.0068 28 1 -0.3634 -0.9749 -0.3250 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 4.4817 -1.0755 -1.5698 34 1 2.6524 1.9936 3.7668 35 1 1.5135 3.2323 3.0121 36 1 0.6741 0.5376 7.3451 37 1 -0.5095 1.6939 6.5302 38 1 -1.7156 -0.4671 3.8719 39 1 -2.5379 -0.7570 5.4236 40 1 -2.0659 0.8959 4.9618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717226860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:16 Heat of formation + Delta-G solvation = 30.884946 kcal Electronic energy + Delta-G solvation = -19741.261068 eV Core-core repulsion = 16944.578852 eV Total energy + Delta-G solvation = -2796.682216 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.59497 -37.56539 -35.38466 -34.75091 -32.32990 -30.13166 -28.17621 -26.35868 -25.52907 -23.51640 -22.82511 -20.86645 -20.63350 -19.29996 -17.96724 -17.17972 -15.70123 -15.32484 -14.72174 -14.26008 -14.03427 -13.43818 -13.31645 -12.94473 -12.77595 -12.61474 -12.25014 -12.11877 -11.95009 -11.59834 -11.42763 -11.17632 -11.11250 -10.97100 -10.72762 -10.50741 -10.43346 -10.26624 -10.08673 -9.89398 -9.71632 -9.16465 -8.85858 -8.75126 -8.03105 -7.49567 -6.29763 -3.83098 3.17977 3.28107 3.32991 3.63246 4.11731 4.25351 4.69750 4.83508 4.97913 5.09946 5.27305 5.43521 5.50067 5.59923 5.75152 5.77392 5.81250 5.86265 5.89809 6.05678 6.11396 6.12524 6.18591 6.20073 6.26355 6.38734 6.45804 6.47642 6.57941 6.60647 6.69551 6.71730 6.80477 7.12852 7.31720 7.39427 7.64410 8.28362 8.59858 9.26670 9.52132 10.12577 10.75812 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.007184 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.326093 B = 3896.879626 C = 4314.682931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.139 3.861 3 C -0.164 4.164 4 N -0.435 5.435 5 C -0.305 4.305 6 H 0.095 0.905 7 C 0.032 3.968 8 N -0.871 5.871 9 Si 0.917 3.083 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.489 3.511 14 O -0.578 6.578 15 C -0.174 4.174 16 H 0.126 0.874 17 C -0.155 4.155 18 C -0.102 4.102 19 H 0.097 0.903 20 C -0.096 4.096 21 H 0.137 0.863 22 C -0.194 4.194 23 C -0.150 4.150 24 H 0.097 0.903 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 5.777 3.780 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 C -0.222 4.222 4 N -0.153 5.153 5 C -0.433 4.433 6 H 0.113 0.887 7 C -0.172 4.172 8 N -0.510 5.510 9 Si 0.744 3.256 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.277 3.723 14 O -0.462 6.462 15 C -0.195 4.195 16 H 0.144 0.856 17 C -0.192 4.192 18 C -0.121 4.121 19 H 0.115 0.885 20 C -0.114 4.114 21 H 0.154 0.846 22 C -0.231 4.231 23 C -0.168 4.168 24 H 0.115 0.885 25 C -0.172 4.172 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.466 5.471 4.058 10.106 hybrid contribution 0.310 -0.679 -0.580 0.945 sum -7.156 4.792 3.478 9.288 Atomic orbital electron populations 1.22619 0.98187 1.01166 1.01542 1.20943 0.90168 0.93319 0.92194 1.22447 1.03460 0.96193 1.00064 1.43555 1.44459 1.24305 1.02977 1.19562 1.20585 0.96515 1.06621 0.88738 1.25268 0.95730 0.98439 0.97714 1.69987 1.34754 1.28707 1.17520 0.86071 0.77819 0.82846 0.78843 1.20494 1.21114 1.19466 1.19180 0.83501 0.85671 0.83901 1.90404 1.58823 1.60190 1.36832 1.22933 1.04122 0.96925 0.95524 0.85640 1.22915 0.97715 0.95427 1.03162 1.21704 0.97161 1.00286 0.92965 0.88485 1.22159 0.99700 0.98606 0.90914 0.84598 1.23125 1.05069 0.99472 0.95455 1.22153 0.95331 0.95846 1.03469 0.88528 1.21267 0.94849 1.00674 1.00423 0.92844 0.92190 0.93054 0.87033 0.92463 0.91070 0.94048 0.92410 0.88572 0.88913 0.89636 0.89771 0.92245 0.93137 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.84 37.16 0.33 -2.88 16 2 C 0.14 3.03 2.32 -67.93 -0.16 2.87 16 3 C -0.16 -3.24 8.78 37.16 0.33 -2.91 16 4 N -0.43 -10.94 2.53 -107.73 -0.27 -11.21 16 5 C -0.30 -8.44 9.15 -14.93 -0.14 -8.57 16 6 H 0.09 2.76 7.53 -52.49 -0.40 2.37 16 7 C 0.03 0.83 4.84 -17.47 -0.08 0.75 16 8 N -0.87 -22.93 10.74 55.50 0.60 -22.33 16 9 Si 0.92 20.70 29.60 -169.99 -5.03 15.67 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.49 11.76 6.74 -10.98 -0.07 11.69 16 14 O -0.58 -15.42 12.89 5.55 0.07 -15.34 16 15 C -0.17 -3.28 2.98 -91.77 -0.27 -3.55 16 16 H 0.13 2.18 3.88 -51.93 -0.20 1.98 16 17 C -0.15 -2.57 9.40 -26.73 -0.25 -2.82 16 18 C -0.10 -1.70 5.06 -90.62 -0.46 -2.16 16 19 H 0.10 1.40 7.29 -51.93 -0.38 1.02 16 20 C -0.10 -1.70 4.40 -90.62 -0.40 -2.10 16 21 H 0.14 2.90 5.89 -51.93 -0.31 2.59 16 22 C -0.19 -2.82 9.90 -26.72 -0.26 -3.08 16 23 C -0.15 -2.41 6.41 -90.61 -0.58 -2.99 16 24 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 25 C -0.12 -1.62 9.21 37.16 0.34 -1.27 16 26 H 0.05 0.81 8.00 -51.93 -0.42 0.40 16 27 H 0.06 1.07 4.98 -51.93 -0.26 0.81 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.11 2.72 5.68 -51.93 -0.30 2.42 16 30 H 0.06 1.04 3.91 -51.93 -0.20 0.83 16 31 H 0.07 1.61 7.75 -51.93 -0.40 1.21 16 32 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.64 7.27 -51.93 -0.38 0.26 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -28.82 308.81 -7.83 -36.65 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.17 Total: 8.96 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.68 Total: -17.04 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.32 Total: -33.55 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.07 Total: -15.34 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.82 -7.83 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717226860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.540 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds