Wall clock time and date at job start Mon Mar 30 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47472 * 2 1 4 4 N 1.46500 * 109.47200 * 120.00210 * 2 1 3 5 5 C 1.37100 * 120.00587 * 118.86587 * 4 2 1 6 6 H 1.07993 * 120.00057 * 208.67221 * 5 4 2 7 7 C 1.38947 * 119.99537 * 28.67850 * 5 4 2 8 8 N 1.31412 * 120.00353 * 19.75326 * 7 5 4 9 9 Si 1.86798 * 119.99903 * 199.75525 * 7 5 4 10 10 H 1.48505 * 109.47041 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47305 * 209.99918 * 9 7 5 12 12 H 1.48505 * 109.47187 * 330.00272 * 9 7 5 13 13 C 1.34783 * 119.99721 * 298.86576 * 4 2 1 14 14 O 1.21294 * 119.99891 * 174.18710 * 13 4 2 15 15 C 1.50697 * 119.99768 * 354.18735 * 13 4 2 16 16 H 1.08996 * 115.55155 * 25.07297 * 15 13 4 17 17 C 1.53000 * 117.49945 * 239.39660 * 15 13 4 18 18 C 1.52993 * 60.00447 * 252.51486 * 17 15 13 19 19 H 1.09001 * 117.49905 * 252.51005 * 18 17 15 20 20 C 1.52995 * 117.50036 * 107.48627 * 18 17 15 21 21 H 1.09000 * 115.55237 * 332.19587 * 20 18 17 22 22 C 1.53011 * 117.49746 * 117.85887 * 20 18 17 23 23 C 1.53003 * 117.50088 * 186.48210 * 20 18 17 24 24 H 1.08997 * 117.49981 * 145.02457 * 23 20 18 25 25 C 1.53003 * 117.49648 * 0.02562 * 23 20 18 26 26 H 1.08998 * 109.47044 * 41.55658 * 1 2 3 27 27 H 1.09000 * 109.47175 * 281.55998 * 1 2 3 28 28 H 1.08997 * 109.47552 * 161.56075 * 1 2 3 29 29 H 1.09002 * 109.47051 * 239.99338 * 2 1 3 30 30 H 1.09003 * 109.47011 * 59.99747 * 3 2 1 31 31 H 1.09000 * 109.47372 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46745 * 300.00265 * 3 2 1 33 33 H 0.97004 * 120.00283 * 179.97438 * 8 7 5 34 34 H 1.09006 * 117.49853 * 0.02562 * 17 15 13 35 35 H 1.08997 * 117.50036 * 145.01752 * 17 15 13 36 36 H 1.08993 * 117.49853 * 214.98142 * 22 20 18 37 37 H 1.08997 * 117.49501 * 0.02562 * 22 20 18 38 38 H 1.08996 * 109.46888 * 64.68872 * 25 23 20 39 39 H 1.08998 * 109.46826 * 184.68314 * 25 23 20 40 40 H 1.08999 * 109.47222 * 304.68145 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.7872 -1.8188 1.0706 6 1 2.7697 -2.5730 1.8433 7 6 3.5892 -1.9915 -0.0509 8 7 3.9216 -0.9549 -0.7871 9 14 4.1948 -3.6973 -0.5122 10 1 3.2134 -4.3420 -1.4213 11 1 5.5073 -3.5879 -1.1981 12 1 4.3451 -4.5182 0.7162 13 6 1.7117 -0.2170 2.4202 14 8 2.0253 -0.8447 3.4095 15 6 0.9791 1.0926 2.5595 16 1 0.3705 1.3842 1.7036 17 6 1.6686 2.2073 3.3487 18 6 0.4697 1.4724 3.9514 19 1 -0.4744 2.0140 4.0114 20 6 0.7431 0.4936 5.0951 21 1 1.7318 0.0349 5.0950 22 6 0.1052 0.7971 6.4523 23 6 -0.4290 -0.3528 5.5959 24 1 -0.2114 -1.3688 5.9254 25 6 -1.7846 -0.1561 4.9143 26 1 -0.3633 0.7690 -0.6817 27 1 -0.3633 0.2059 1.0068 28 1 -0.3634 -0.9749 -0.3250 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 4.4817 -1.0755 -1.5698 34 1 2.6524 1.9936 3.7668 35 1 1.5135 3.2323 3.0121 36 1 0.6741 0.5376 7.3451 37 1 -0.5095 1.6939 6.5302 38 1 -1.7156 -0.4671 3.8719 39 1 -2.5379 -0.7570 5.4236 40 1 -2.0659 0.8959 4.9618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717226860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:16 Heat of formation + Delta-G solvation = 15.623876 kcal Electronic energy + Delta-G solvation = -19741.922837 eV Core-core repulsion = 16944.578852 eV Total energy + Delta-G solvation = -2797.343986 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22950 -39.02988 -37.14488 -36.26292 -34.24326 -31.96875 -29.31918 -27.87520 -27.41025 -25.12197 -24.24925 -22.33829 -22.04931 -20.80421 -19.60601 -18.98552 -17.43701 -16.82740 -16.43345 -15.95832 -15.66620 -15.11957 -14.89777 -14.55860 -14.05529 -13.94518 -13.89361 -13.61004 -13.35797 -13.17434 -12.96515 -12.90180 -12.76098 -12.28153 -12.24850 -12.07922 -12.00558 -11.86570 -11.82665 -11.34159 -11.27742 -10.74493 -10.51464 -10.14625 -9.79747 -9.43633 -8.31240 -5.91996 1.35196 1.39242 1.50343 1.97912 2.28926 2.74973 3.06377 3.14389 3.40725 3.70142 3.96993 4.00053 4.13091 4.29699 4.36388 4.41436 4.45066 4.51827 4.56841 4.58742 4.76278 4.88303 4.91797 4.94375 5.00704 5.03424 5.05039 5.11074 5.15812 5.25661 5.29371 5.36067 5.47709 5.49617 5.60807 5.72328 5.77272 6.24299 6.63448 7.27218 7.62207 8.22500 8.72254 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.007184 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.326093 B = 3896.879626 C = 4314.682931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.133 3.867 3 C -0.154 4.154 4 N -0.451 5.451 5 C -0.343 4.343 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.881 5.881 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.476 3.524 14 O -0.619 6.619 15 C -0.190 4.190 16 H 0.148 0.852 17 C -0.145 4.145 18 C -0.083 4.083 19 H 0.136 0.864 20 C -0.128 4.128 21 H 0.088 0.912 22 C -0.161 4.161 23 C -0.161 4.161 24 H 0.076 0.924 25 C -0.109 4.109 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.271 0.729 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 7.935 3.512 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.029 3.971 3 C -0.211 4.211 4 N -0.169 5.169 5 C -0.471 4.471 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.519 5.519 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.205 1.205 13 C 0.266 3.734 14 O -0.506 6.506 15 C -0.211 4.211 16 H 0.165 0.835 17 C -0.182 4.182 18 C -0.101 4.101 19 H 0.153 0.847 20 C -0.146 4.146 21 H 0.106 0.894 22 C -0.198 4.198 23 C -0.179 4.179 24 H 0.094 0.906 25 C -0.166 4.166 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.563 7.649 3.766 12.812 hybrid contribution 1.027 -1.391 -0.433 1.782 sum -8.536 6.259 3.333 11.097 Atomic orbital electron populations 1.22515 0.95056 1.02142 1.02827 1.21057 0.92631 0.93725 0.89680 1.22346 1.01017 0.95310 1.02476 1.43825 1.44465 1.24111 1.04549 1.19426 1.22893 0.97750 1.07007 0.92128 1.25920 0.95382 1.01729 0.97041 1.70062 1.34500 1.29914 1.17466 0.85189 0.77868 0.78648 0.78151 1.19149 1.20014 1.20516 1.20117 0.83111 0.87151 0.82987 1.90401 1.60380 1.61829 1.38023 1.22787 1.05482 0.94766 0.98021 0.83477 1.23037 0.96734 0.96585 1.01882 1.21843 0.98501 0.99262 0.90534 0.84669 1.21952 0.98218 1.00469 0.93962 0.89417 1.23181 1.03470 0.99455 0.93650 1.22253 0.95955 0.95473 1.04222 0.90609 1.21247 0.93721 1.02508 0.99162 0.89086 0.91669 0.93859 0.90014 0.90520 0.94732 0.91019 0.91975 0.91186 0.84763 0.89165 0.86796 0.93969 0.91524 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.77 8.84 71.98 0.64 -5.13 16 2 C 0.13 5.81 2.32 44.99 0.10 5.91 16 3 C -0.15 -5.88 8.78 71.98 0.63 -5.25 16 4 N -0.45 -23.55 2.53 -613.14 -1.55 -25.10 16 5 C -0.34 -20.01 9.15 84.04 0.77 -19.24 16 6 H 0.06 3.84 7.53 -2.91 -0.02 3.82 16 7 C 0.00 0.09 4.84 84.93 0.41 0.50 16 8 N -0.88 -47.37 10.74 21.66 0.23 -47.14 16 9 Si 0.98 43.61 29.60 68.60 2.03 45.64 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.48 23.71 6.74 87.66 0.59 24.30 16 14 O -0.62 -35.26 12.89 -3.07 -0.04 -35.30 16 15 C -0.19 -6.90 2.98 -11.54 -0.03 -6.94 16 16 H 0.15 4.65 3.88 -2.39 -0.01 4.64 16 17 C -0.14 -4.52 9.40 30.59 0.29 -4.23 16 18 C -0.08 -2.55 5.06 -10.80 -0.05 -2.61 16 19 H 0.14 3.17 7.29 -2.39 -0.02 3.16 16 20 C -0.13 -4.50 4.40 -10.79 -0.05 -4.55 16 21 H 0.09 3.98 5.89 -2.39 -0.01 3.97 16 22 C -0.16 -4.30 9.90 30.60 0.30 -3.99 16 23 C -0.16 -5.05 6.41 -10.79 -0.07 -5.12 16 24 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 25 C -0.11 -2.80 9.21 71.98 0.66 -2.13 16 26 H 0.09 2.43 8.00 -2.39 -0.02 2.41 16 27 H 0.06 2.18 4.98 -2.39 -0.01 2.17 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 4.04 5.68 -2.39 -0.01 4.03 16 30 H 0.08 2.59 3.91 -2.39 -0.01 2.59 16 31 H 0.03 1.55 7.75 -2.39 -0.02 1.53 16 32 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 33 H 0.27 13.66 8.31 -92.71 -0.77 12.88 16 34 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.11 2.41 8.08 -2.39 -0.02 2.39 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.54 7.27 -2.39 -0.02 1.52 16 Total: -1.00 -68.04 308.81 5.89 -62.15 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 1.02 Total: 28.23 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 4.19 Total: -28.49 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.32 Total: -72.24 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.04 Total: -35.30 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.04 5.89 -62.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717226860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.775 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds