Wall clock time and date at job start Mon Mar 30 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47158 * 2 1 4 4 C 1.46500 * 119.99822 * 89.99780 * 3 2 1 5 5 C 1.50696 * 109.47324 * 270.00080 * 4 3 2 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00126 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99707 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 0.27447 * 7 5 4 10 10 H 1.48503 * 109.47407 * 269.72718 * 9 7 5 11 11 H 1.48505 * 109.47281 * 29.72474 * 9 7 5 12 12 H 1.48501 * 109.47274 * 149.72572 * 9 7 5 13 13 C 1.34772 * 120.00402 * 269.99934 * 3 2 1 14 14 O 1.21282 * 120.00532 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99784 * 359.97438 * 13 3 2 16 16 H 1.09003 * 115.54797 * 34.28265 * 15 13 3 17 17 C 1.52998 * 117.50110 * 248.61137 * 15 13 3 18 18 C 1.53001 * 117.49798 * 179.97438 * 15 13 3 19 19 H 1.09000 * 117.49371 * 214.98518 * 18 15 13 20 20 C 1.52996 * 117.49792 * 0.02562 * 18 15 13 21 21 H 1.09002 * 115.54556 * 85.67612 * 20 18 15 22 22 C 1.53001 * 117.50026 * 231.37449 * 20 18 15 23 23 C 1.52999 * 117.50524 * 300.00094 * 20 18 15 24 24 H 1.09003 * 117.49331 * 0.02562 * 23 20 18 25 25 C 1.52995 * 117.50138 * 144.99783 * 23 20 18 26 26 H 1.08995 * 109.47390 * 299.99883 * 1 2 3 27 27 H 1.09001 * 109.46971 * 59.99694 * 1 2 3 28 28 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47714 * 239.99974 * 2 1 3 30 30 H 1.08994 * 109.47258 * 120.00053 * 2 1 3 31 31 H 1.08996 * 109.47197 * 149.99819 * 4 3 2 32 32 H 1.09004 * 109.46923 * 30.00515 * 4 3 2 33 33 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 34 34 H 1.08990 * 117.49915 * 359.97438 * 17 15 13 35 35 H 1.08999 * 117.49725 * 145.02591 * 17 15 13 36 36 H 1.09001 * 117.50367 * 214.98383 * 22 20 18 37 37 H 1.09004 * 117.50000 * 0.02562 * 22 20 18 38 38 H 1.08994 * 109.47199 * 59.99749 * 25 23 20 39 39 H 1.08994 * 109.47017 * 180.02562 * 25 23 20 40 40 H 1.08999 * 109.46905 * 300.00119 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 1.0066 2.7822 1.7038 6 1 0.1156 2.7247 1.0962 7 6 0.9951 3.5057 2.8775 8 7 -0.1010 4.1252 3.2574 9 14 2.5384 3.6115 3.9246 10 1 2.5468 2.4988 4.9080 11 1 3.7362 3.5102 3.0525 12 1 2.5594 4.9096 4.6456 13 6 2.2430 2.0166 -1.1671 14 8 2.6477 3.1599 -1.1671 15 6 1.9924 1.3061 -2.4723 16 1 1.1574 0.6053 -2.4732 17 6 3.2092 0.9563 -3.3313 18 6 2.2659 2.0814 -3.7626 19 1 1.6108 1.8907 -4.6127 20 6 2.7734 3.5185 -3.6291 21 1 3.8518 3.6274 -3.5144 22 6 2.0324 4.6050 -4.4111 23 6 1.8800 4.5177 -2.8912 24 1 0.9308 4.1510 -2.5005 25 6 2.5687 5.5932 -2.0488 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0643 2.7984 1.1385 32 1 2.5506 1.3451 2.0284 33 1 -0.1092 4.6338 4.0833 34 1 4.1909 1.2405 -2.9527 35 1 3.1746 0.0257 -3.8977 36 1 2.6233 5.4289 -4.8112 37 1 1.1830 4.2959 -5.0204 38 1 3.2116 6.1987 -2.6876 39 1 1.8150 6.2288 -1.5842 40 1 3.1704 5.1179 -1.2741 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717230431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:19 Heat of formation + Delta-G solvation = 19.806011 kcal Electronic energy + Delta-G solvation = -19550.450372 eV Core-core repulsion = 16753.287738 eV Total energy + Delta-G solvation = -2797.162635 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.80955 -37.47116 -35.19837 -35.05241 -32.57271 -30.15476 -28.02909 -27.85225 -24.47280 -23.07656 -22.61975 -21.56272 -20.53071 -19.66679 -17.93705 -16.88347 -16.59521 -15.63254 -14.82064 -14.58701 -14.15113 -13.86640 -13.39843 -13.21343 -12.91249 -12.52667 -12.40599 -12.09360 -11.80471 -11.63275 -11.61532 -11.31614 -11.21450 -10.86839 -10.68822 -10.65378 -10.47420 -10.33942 -10.29067 -10.08154 -9.47006 -9.37174 -9.25092 -8.55765 -8.27236 -7.58731 -6.05335 -4.02708 3.21621 3.28057 3.36585 3.40640 3.88445 4.02882 4.35941 4.42234 4.87657 5.05382 5.07055 5.24312 5.30727 5.42281 5.51573 5.55681 5.64315 5.71000 5.78611 5.81189 5.88104 5.95223 6.07894 6.16336 6.19634 6.34156 6.36413 6.43380 6.54760 6.61638 6.72481 6.87522 6.92998 7.03177 7.06810 7.52802 7.66573 8.38705 8.52879 8.99155 9.20246 9.56226 11.07949 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.008079 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.802626 B = 3464.987675 C = 4238.090729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.593 5.593 4 C 0.218 3.782 5 C -0.521 4.521 6 H 0.076 0.924 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.264 1.264 12 H -0.285 1.285 13 C 0.531 3.469 14 O -0.516 6.516 15 C -0.182 4.182 16 H 0.116 0.884 17 C -0.153 4.153 18 C -0.091 4.091 19 H 0.106 0.894 20 C -0.106 4.106 21 H 0.098 0.902 22 C -0.204 4.204 23 C -0.081 4.081 24 H 0.094 0.906 25 C -0.111 4.111 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.048 0.952 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -7.050 -12.334 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.325 5.325 4 C 0.097 3.903 5 C -0.559 4.559 6 H 0.094 0.906 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.699 3.301 10 H -0.203 1.203 11 H -0.189 1.189 12 H -0.211 1.211 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.203 4.203 16 H 0.134 0.866 17 C -0.190 4.190 18 C -0.110 4.110 19 H 0.124 0.876 20 C -0.124 4.124 21 H 0.116 0.884 22 C -0.241 4.241 23 C -0.099 4.099 24 H 0.112 0.888 25 C -0.168 4.168 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.127 -6.313 -12.151 14.622 hybrid contribution 0.414 -0.130 0.749 0.866 sum 5.541 -6.443 -11.402 14.220 Atomic orbital electron populations 1.22241 0.96252 1.00748 1.03661 1.21360 0.94605 0.83602 1.01453 1.47899 1.64540 1.13163 1.06899 1.19618 0.98084 0.92492 0.80079 1.21353 0.97331 1.30360 1.06876 0.90610 1.24857 0.95830 0.94957 0.97428 1.69899 1.27170 1.33218 1.23480 0.86904 0.84561 0.77755 0.80838 1.20295 1.18903 1.21094 1.19436 0.78614 0.86308 0.83795 1.90705 1.45663 1.16348 1.86527 1.22403 1.01670 1.04300 0.91976 0.86632 1.22947 0.94556 0.99459 1.02068 1.21743 1.01582 0.91757 0.95875 0.87614 1.21491 0.97621 0.88190 1.05144 0.88408 1.23413 1.02799 1.01382 0.96545 1.21869 0.99781 0.98363 0.89908 0.88823 1.21306 0.99778 0.96241 0.99494 0.90332 0.93240 0.93014 0.91780 0.91123 0.94263 0.96126 0.92705 0.88507 0.88425 0.89731 0.89897 0.94675 0.93284 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.12 37.16 0.38 -2.34 16 2 C 0.11 1.81 5.80 -4.04 -0.02 1.79 16 3 N -0.59 -11.99 2.46 -175.06 -0.43 -12.42 16 4 C 0.22 5.24 4.27 -5.20 -0.02 5.22 16 5 C -0.52 -14.61 9.48 -34.44 -0.33 -14.94 16 6 H 0.08 2.34 7.67 -52.49 -0.40 1.94 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 9 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 C 0.53 10.43 7.29 -10.99 -0.08 10.35 16 14 O -0.52 -11.41 8.95 5.56 0.05 -11.36 16 15 C -0.18 -2.73 4.79 -91.77 -0.44 -3.17 16 16 H 0.12 1.56 6.48 -51.93 -0.34 1.22 16 17 C -0.15 -1.89 9.96 -26.72 -0.27 -2.16 16 18 C -0.09 -1.25 5.87 -90.61 -0.53 -1.78 16 19 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 20 C -0.11 -1.64 4.20 -90.62 -0.38 -2.02 16 21 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 22 C -0.20 -2.90 9.90 -26.73 -0.26 -3.17 16 23 C -0.08 -1.42 3.80 -90.62 -0.34 -1.76 16 24 H 0.09 1.86 7.96 -51.93 -0.41 1.45 16 25 C -0.11 -2.03 9.73 37.15 0.36 -1.67 16 26 H 0.08 1.53 7.26 -51.93 -0.38 1.16 16 27 H 0.05 0.79 7.46 -51.93 -0.39 0.40 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.83 6.64 -51.93 -0.34 0.49 16 30 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 31 H 0.04 1.02 6.46 -51.93 -0.34 0.68 16 32 H 0.02 0.48 7.33 -51.93 -0.38 0.10 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.72 6.19 -51.93 -0.32 1.40 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -30.98 316.85 -8.20 -39.19 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.66 Total: 3.44 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.04 Total: -13.70 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.34 Total: -39.19 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.05 Total: -11.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.98 -8.20 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717230431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.995 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds