Wall clock time and date at job start Mon Mar 30 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47158 * 2 1 4 4 C 1.46500 * 119.99822 * 89.99780 * 3 2 1 5 5 C 1.50696 * 109.47324 * 270.00080 * 4 3 2 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00126 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99707 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 0.27447 * 7 5 4 10 10 H 1.48503 * 109.47407 * 269.72718 * 9 7 5 11 11 H 1.48505 * 109.47281 * 29.72474 * 9 7 5 12 12 H 1.48501 * 109.47274 * 149.72572 * 9 7 5 13 13 C 1.34772 * 120.00402 * 269.99934 * 3 2 1 14 14 O 1.21282 * 120.00532 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99784 * 359.97438 * 13 3 2 16 16 H 1.09003 * 115.54797 * 34.28265 * 15 13 3 17 17 C 1.52998 * 117.50110 * 248.61137 * 15 13 3 18 18 C 1.53001 * 117.49798 * 179.97438 * 15 13 3 19 19 H 1.09000 * 117.49371 * 214.98518 * 18 15 13 20 20 C 1.52996 * 117.49792 * 0.02562 * 18 15 13 21 21 H 1.09002 * 115.54556 * 85.67612 * 20 18 15 22 22 C 1.53001 * 117.50026 * 231.37449 * 20 18 15 23 23 C 1.52999 * 117.50524 * 300.00094 * 20 18 15 24 24 H 1.09003 * 117.49331 * 0.02562 * 23 20 18 25 25 C 1.52995 * 117.50138 * 144.99783 * 23 20 18 26 26 H 1.08995 * 109.47390 * 299.99883 * 1 2 3 27 27 H 1.09001 * 109.46971 * 59.99694 * 1 2 3 28 28 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47714 * 239.99974 * 2 1 3 30 30 H 1.08994 * 109.47258 * 120.00053 * 2 1 3 31 31 H 1.08996 * 109.47197 * 149.99819 * 4 3 2 32 32 H 1.09004 * 109.46923 * 30.00515 * 4 3 2 33 33 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 34 34 H 1.08990 * 117.49915 * 359.97438 * 17 15 13 35 35 H 1.08999 * 117.49725 * 145.02591 * 17 15 13 36 36 H 1.09001 * 117.50367 * 214.98383 * 22 20 18 37 37 H 1.09004 * 117.50000 * 0.02562 * 22 20 18 38 38 H 1.08994 * 109.47199 * 59.99749 * 25 23 20 39 39 H 1.08994 * 109.47017 * 180.02562 * 25 23 20 40 40 H 1.08999 * 109.46905 * 300.00119 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 1.0066 2.7822 1.7038 6 1 0.1156 2.7247 1.0962 7 6 0.9951 3.5057 2.8775 8 7 -0.1010 4.1252 3.2574 9 14 2.5384 3.6115 3.9246 10 1 2.5468 2.4988 4.9080 11 1 3.7362 3.5102 3.0525 12 1 2.5594 4.9096 4.6456 13 6 2.2430 2.0166 -1.1671 14 8 2.6477 3.1599 -1.1671 15 6 1.9924 1.3061 -2.4723 16 1 1.1574 0.6053 -2.4732 17 6 3.2092 0.9563 -3.3313 18 6 2.2659 2.0814 -3.7626 19 1 1.6108 1.8907 -4.6127 20 6 2.7734 3.5185 -3.6291 21 1 3.8518 3.6274 -3.5144 22 6 2.0324 4.6050 -4.4111 23 6 1.8800 4.5177 -2.8912 24 1 0.9308 4.1510 -2.5005 25 6 2.5687 5.5932 -2.0488 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0643 2.7984 1.1385 32 1 2.5506 1.3451 2.0284 33 1 -0.1092 4.6338 4.0833 34 1 4.1909 1.2405 -2.9527 35 1 3.1746 0.0257 -3.8977 36 1 2.6233 5.4289 -4.8112 37 1 1.1830 4.2959 -5.0204 38 1 3.2116 6.1987 -2.6876 39 1 1.8150 6.2288 -1.5842 40 1 3.1704 5.1179 -1.2741 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717230431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:18 Heat of formation + Delta-G solvation = 1.844599 kcal Electronic energy + Delta-G solvation = -19551.229238 eV Core-core repulsion = 16753.287738 eV Total energy + Delta-G solvation = -2797.941500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17623 -38.84180 -36.67846 -36.34989 -34.71181 -31.76963 -29.77335 -29.33038 -26.02932 -24.21210 -24.10875 -23.13819 -21.73436 -21.03248 -19.38383 -19.00549 -18.02780 -17.13373 -16.33319 -16.07407 -15.68770 -15.36625 -14.74854 -14.67806 -14.57218 -14.24842 -13.78443 -13.64515 -13.48311 -13.14965 -13.00280 -12.88829 -12.55656 -12.34580 -12.25497 -12.03426 -12.01260 -11.86559 -11.68543 -11.61196 -11.44453 -10.79291 -10.70073 -10.51322 -9.67122 -9.23954 -8.30522 -6.32963 1.30039 1.34583 1.44876 1.84636 2.31771 2.43426 2.81527 3.03554 3.18657 3.66364 3.88131 3.97537 4.05776 4.21523 4.28887 4.35021 4.47407 4.50746 4.54335 4.62802 4.64895 4.79986 4.88567 4.93571 4.96519 4.97601 5.04242 5.06195 5.09969 5.13066 5.31798 5.38187 5.48450 5.50208 5.53083 5.56663 5.84841 6.32424 6.68488 6.88732 7.27915 7.70214 8.86368 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.008079 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.802626 B = 3464.987675 C = 4238.090729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.604 5.604 4 C 0.228 3.772 5 C -0.519 4.519 6 H 0.030 0.970 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.944 3.056 10 H -0.255 1.255 11 H -0.256 1.256 12 H -0.285 1.285 13 C 0.515 3.485 14 O -0.550 6.550 15 C -0.195 4.195 16 H 0.136 0.864 17 C -0.122 4.122 18 C -0.096 4.096 19 H 0.134 0.866 20 C -0.103 4.103 21 H 0.090 0.910 22 C -0.172 4.172 23 C -0.114 4.114 24 H 0.058 0.942 25 C -0.104 4.104 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.019 0.981 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -9.357 -14.405 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.013 4.013 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.557 4.557 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.180 1.180 11 H -0.180 1.180 12 H -0.211 1.211 13 C 0.305 3.695 14 O -0.429 6.429 15 C -0.216 4.216 16 H 0.153 0.847 17 C -0.160 4.160 18 C -0.114 4.114 19 H 0.152 0.848 20 C -0.121 4.121 21 H 0.108 0.892 22 C -0.209 4.209 23 C -0.133 4.133 24 H 0.077 0.923 25 C -0.161 4.161 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.797 -8.664 -14.245 18.005 hybrid contribution -0.186 0.619 1.336 1.485 sum 6.611 -8.045 -12.908 16.585 Atomic orbital electron populations 1.22151 0.96619 1.02339 1.00999 1.21664 0.94214 0.81526 1.03912 1.48010 1.65050 1.14776 1.05776 1.19231 0.95079 0.92492 0.82628 1.21549 0.97474 1.30539 1.06179 0.95162 1.25808 0.99361 0.94577 0.99094 1.70061 1.29768 1.34668 1.24386 0.85770 0.80106 0.78301 0.79116 1.17964 1.18035 1.21083 1.20395 0.77630 0.86286 0.85208 1.90713 1.46949 1.17958 1.87259 1.22321 1.04269 1.05398 0.89623 0.84667 1.23090 0.92761 1.00284 0.99817 1.21930 1.02730 0.90965 0.95788 0.84837 1.21540 0.96934 0.89595 1.04053 0.89193 1.23449 1.02830 1.00971 0.93670 1.21635 0.99138 1.00113 0.92382 0.92342 1.21179 0.99230 0.96456 0.99249 0.95124 0.93746 0.89170 0.87654 0.90212 0.96321 0.94384 0.92580 0.89511 0.84312 0.88187 0.88041 0.92154 0.95042 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 10.12 71.98 0.73 -4.34 16 2 C 0.11 3.26 5.80 86.38 0.50 3.77 16 3 N -0.60 -24.46 2.46 -826.17 -2.03 -26.49 16 4 C 0.23 11.19 4.27 85.63 0.37 11.56 16 5 C -0.52 -30.58 9.48 25.60 0.24 -30.33 16 6 H 0.03 2.00 7.67 -2.91 -0.02 1.98 16 7 C 0.01 0.53 5.47 84.66 0.46 0.99 16 8 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 9 Si 0.94 45.35 27.47 68.60 1.88 47.23 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.26 -11.88 6.53 99.48 0.65 -11.23 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 13 C 0.52 20.29 7.29 87.66 0.64 20.93 16 14 O -0.55 -25.28 8.95 -3.04 -0.03 -25.31 16 15 C -0.20 -5.36 4.79 -11.54 -0.06 -5.42 16 16 H 0.14 3.17 6.48 -2.39 -0.02 3.16 16 17 C -0.12 -2.51 9.96 30.60 0.30 -2.20 16 18 C -0.10 -2.33 5.87 -10.79 -0.06 -2.40 16 19 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 20 C -0.10 -3.04 4.20 -10.80 -0.05 -3.08 16 21 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 22 C -0.17 -4.53 9.90 30.60 0.30 -4.23 16 23 C -0.11 -4.10 3.80 -10.79 -0.04 -4.14 16 24 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16 25 C -0.10 -4.00 9.73 71.98 0.70 -3.30 16 26 H 0.03 1.23 7.26 -2.39 -0.02 1.21 16 27 H 0.04 1.39 7.46 -2.39 -0.02 1.37 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.11 2.32 6.64 -2.39 -0.02 2.30 16 30 H 0.08 2.23 7.89 -2.39 -0.02 2.22 16 31 H 0.02 0.99 6.46 -2.39 -0.02 0.98 16 32 H 0.04 1.73 7.33 -2.39 -0.02 1.71 16 33 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 2.34 8.05 -2.39 -0.02 2.32 16 37 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.92 7.90 -2.39 -0.02 1.91 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 2.19 6.19 -2.39 -0.01 2.18 16 Total: -1.00 -73.56 316.85 5.12 -68.45 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.94 Total: 18.78 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 4.04 Total: -22.19 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.73 Total: -86.97 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.03 Total: -25.31 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -73.56 5.12 -68.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717230431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.293 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds